sci-biology:tree-puzzle-5.2:20210826-113859.log

sci-biology:tree-puzzle-5.2:20210826-113859.log (text/plain), 53.64 KB, created by Toralf Förster on 2021-08-26 16:56:14 UTC

 * Package:    sci-biology/tree-puzzle-5.2
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux mpi userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox

>>> Unpacking source...
>>> Unpacking tree-puzzle-5.2.tar.gz to /var/tmp/portage/sci-biology/tree-puzzle-5.2/work
>>> Source unpacked in /var/tmp/portage/sci-biology/tree-puzzle-5.2/work
>>> Preparing source in /var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2 ...
 * Applying tree-puzzle-impl-dec.patch ...
 [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2 ...
 * econf: updating tree-puzzle-5.2/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating tree-puzzle-5.2/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --libdir=/usr/lib64
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for a BSD-compatible install... /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets ${MAKE}... yes
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking for C compiler default output... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of x86_64-pc-linux-gnu-gcc... none
checking whether x86_64-pc-linux-gnu-gcc and cc understand -c and -o together... yes
checking for a BSD-compatible install... /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c
checking whether make sets ${MAKE}... (cached) yes
checking for mpcc... no
checking for hcc... no
checking for mpicc... /usr/bin/mpicc
checking for mpicc_lam... no
checking for mpicc_mpich... no
checking for cc... /usr/bin/cc
checking whether /usr/bin/mpicc works as MPI compiler... yes
checking whether /usr/bin/mpicc handles quotes correctly... yes
checking whether x86_64-pc-linux-gnu-gcc handles quotes correctly... yes
checking for main in -lm... yes
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ANSI C... none needed
checking for an ANSI C-conforming const... yes
checking for size_t... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/sprng/Makefile
config.status: creating doc/Makefile
config.status: creating data/Makefile
config.status: creating tests/Makefile
config.status: creating src/config.h
config.status: executing depfiles commands
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2 ...
make -j4 
Making all in src
make[1]: Entering directory '/var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2/src'
make  all-recursive
make[2]: Entering directory '/var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2/src'
Making all in sprng
make[3]: Entering directory '/var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2/src/sprng'
x86_64-pc-linux-gnu-gcc        -pipe -march=native -fno-diagnostics-color -O2  -c makeseed.c
x86_64-pc-linux-gnu-gcc        -pipe -march=native -fno-diagnostics-color -O2  -c store.c
x86_64-pc-linux-gnu-gcc        -pipe -march=native -fno-diagnostics-color -O2  -c memory.c
x86_64-pc-linux-gnu-gcc        -pipe -march=native -fno-diagnostics-color -O2  -c checkid.c
x86_64-pc-linux-gnu-gcc        -pipe -march=native -fno-diagnostics-color -O2  -c lcg64.c 
x86_64-pc-linux-gnu-gcc        -pipe -march=native -fno-diagnostics-color -O2  -c primes-lcg64.c 
make[3]: Leaving directory '/var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2/src/sprng'
make[3]: Entering directory '/var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2/src'
x86_64-pc-linux-gnu-gcc  -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./gamma.c && mv gamma.o sgamma.o
x86_64-pc-linux-gnu-gcc  -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./ml1.c && mv ml1.o sml1.o
x86_64-pc-linux-gnu-gcc  -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./ml2.c && mv ml2.o sml2.o
x86_64-pc-linux-gnu-gcc  -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./mlparam.c && mv mlparam.o smlparam.o
x86_64-pc-linux-gnu-gcc  -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./model1.c && mv model1.o smodel1.o
x86_64-pc-linux-gnu-gcc  -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./model2.c && mv model2.o smodel2.o
x86_64-pc-linux-gnu-gcc  -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./puzzle1.c && mv puzzle1.o spuzzle1.o
./puzzle1.c: In function ‘readallquarts’:
./puzzle1.c:294:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  294 |   fscanf(ifp, "TREE-PUZZLE\n");
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:295:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  295 |   fscanf(ifp, "%s\n\n", dummyversion);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:297:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  297 |   fscanf(ifp, "species: %d\n",   &dummynspec);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:298:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  298 |   fscanf(ifp, "quartets: %lu\n", &dummynquart);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:299:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   fscanf(ifp, "bytes: %lu\n\n",  &dummyblocklen);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:322:6: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  322 |      fscanf(ifp, "%s\n", dummyname);
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:335:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  335 |   fread(&(quartetinfo[0]), sizeof(char), blocklen, ifp);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c: In function ‘setoptions’:
./puzzle1.c:718:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  718 |                                                         scanf("%d", &locroot);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:776:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  776 |                                                         scanf("%lf", &fracinv);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:795:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  795 |                                                         scanf("%lf", &Geta);
      |                                                         ^~~~~~~~~~~~~~~~~~~
./puzzle1.c:813:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  813 |                                                         scanf("%d", &numcats);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:915:65: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  915 |                                                             scanf("%d", &numclust);
      |                                                             ^~~~~~~~~~~~~~~~~~~~~~

./puzzle1.c:1115:65: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1115 |                                                             scanf("%lf", &(Freqtpm[i]));
      |                                                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~

./puzzle1.c:1149:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1149 |                                                         scanf("%lu", &Numtrial);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:1164:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1164 |                                                         scanf("%lu", &lmqts);
      |                                                         ^~~~~~~~~~~~~~~~~~~~
./puzzle1.c:1181:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1181 |                                                         scanf("%d", &outgroup);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:1449:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1449 |                                                         scanf("%lf", &TSparam);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:1478:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1478 |                                                         scanf("%lf", &YRparam);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:1502:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1502 |                                                         scanf("%lf", &tstvf84);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:1515:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1515 |                                                         scanf("%lf", &GTR_ACrate);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:1524:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1524 |                                                         scanf("%lf", &GTR_AGrate);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:1533:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1533 |                                                         scanf("%lf", &GTR_ATrate);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:1542:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1542 |                                                         scanf("%lf", &GTR_CGrate);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:1551:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1551 |                                                         scanf("%lf", &GTR_CTrate);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:1560:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1560 |                                                         scanf("%lf", &GTR_GTrate);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc  -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./puzzle2.c && mv puzzle2.o spuzzle2.o
x86_64-pc-linux-gnu-gcc  -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./pstep.c && mv pstep.o spstep.o
x86_64-pc-linux-gnu-gcc  -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./util.c && mv util.o sutil.o
x86_64-pc-linux-gnu-gcc  -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./consensus.c && mv consensus.o sconsensus.o
x86_64-pc-linux-gnu-gcc  -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./treesort.c && mv treesort.o streesort.o
x86_64-pc-linux-gnu-gcc  -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./treetest.c && mv treetest.o streetest.o
cd sprng && make makeseed.o store.o memory.o checkid.o lcg64.o primes-lcg64.o 
make[4]: Entering directory '/var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2/src/sprng'
make[4]: 'makeseed.o' is up to date.
make[4]: 'store.o' is up to date.
make[4]: 'memory.o' is up to date.
make[4]: 'checkid.o' is up to date.
make[4]: 'lcg64.o' is up to date.
make[4]: 'primes-lcg64.o' is up to date.
make[4]: Leaving directory '/var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2/src/sprng'
/usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./gamma.c && mv gamma.o pgamma.o
/usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./ml1.c && mv ml1.o pml1.o
/usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./ml2.c && mv ml2.o pml2.o
/usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./mlparam.c && mv mlparam.o pmlparam.o
/usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./model1.c && mv model1.o pmodel1.o
/usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./model2.c && mv model2.o pmodel2.o
/usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./puzzle1.c && mv puzzle1.o ppuzzle1.o
./puzzle1.c: In function ‘readallquarts’:
./puzzle1.c:294:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  294 |   fscanf(ifp, "TREE-PUZZLE\n");
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:295:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  295 |   fscanf(ifp, "%s\n\n", dummyversion);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:297:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  297 |   fscanf(ifp, "species: %d\n",   &dummynspec);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:298:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  298 |   fscanf(ifp, "quartets: %lu\n", &dummynquart);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:299:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   fscanf(ifp, "bytes: %lu\n\n",  &dummyblocklen);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:322:6: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  322 |      fscanf(ifp, "%s\n", dummyname);
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:335:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  335 |   fread(&(quartetinfo[0]), sizeof(char), blocklen, ifp);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c: In function ‘setoptions’:
./puzzle1.c:718:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  718 |                                                         scanf("%d", &locroot);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:776:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  776 |                                                         scanf("%lf", &fracinv);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:795:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  795 |                                                         scanf("%lf", &Geta);
      |                                                         ^~~~~~~~~~~~~~~~~~~
./puzzle1.c:813:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  813 |                                                         scanf("%d", &numcats);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:915:65: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  915 |                                                             scanf("%d", &numclust);
      |                                                             ^~~~~~~~~~~~~~~~~~~~~~

./puzzle1.c:1115:65: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1115 |                                                             scanf("%lf", &(Freqtpm[i]));
      |                                                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~

./puzzle1.c:1149:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1149 |                                                         scanf("%lu", &Numtrial);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:1164:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1164 |                                                         scanf("%lu", &lmqts);
      |                                                         ^~~~~~~~~~~~~~~~~~~~
./puzzle1.c:1181:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1181 |                                                         scanf("%d", &outgroup);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:1449:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1449 |                                                         scanf("%lf", &TSparam);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:1478:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1478 |                                                         scanf("%lf", &YRparam);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:1502:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1502 |                                                         scanf("%lf", &tstvf84);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:1515:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1515 |                                                         scanf("%lf", &GTR_ACrate);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:1524:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1524 |                                                         scanf("%lf", &GTR_AGrate);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:1533:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1533 |                                                         scanf("%lf", &GTR_ATrate);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:1542:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1542 |                                                         scanf("%lf", &GTR_CGrate);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:1551:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1551 |                                                         scanf("%lf", &GTR_CTrate);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~
./puzzle1.c:1560:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1560 |                                                         scanf("%lf", &GTR_GTrate);
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./puzzle2.c && mv puzzle2.o ppuzzle2.o
/usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./pstep.c && mv pstep.o ppstep.o
/usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./sched.c && mv sched.o psched.o
/usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./util.c && mv util.o putil.o
/usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./consensus.c && mv consensus.o pconsensus.o
/usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./treesort.c && mv treesort.o ptreesort.o
/usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./treetest.c && mv treetest.o ptreetest.o
/usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng      -pipe -march=native -fno-diagnostics-color -O2  -c ./ppuzzle.c 
./ppuzzle.c: In function ‘PP_Printerror’:
./ppuzzle.c:159:38: error: ‘MPI_ERR_LASTCODE’ undeclared (first use in this function)
  159 |   if ((err > MPI_SUCCESS) && (err <= MPI_ERR_LASTCODE)) {
      |                                      ^~~~~~~~~~~~~~~~
./ppuzzle.c:159:38: note: each undeclared identifier is reported only once for each function it appears in
./ppuzzle.c: In function ‘PP_Update_EEI’:
./ppuzzle.c:300:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  300 |         MPI_Address(&(Eval[0]), &(Dtypeaddr[0]));
      |         ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:302:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  302 |         MPI_Address(&(Evec[0][0]), &(Dtypeaddr[1]));
      |         ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:304:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  304 |         MPI_Address(&(Ievc[0][0]), &(Dtypeaddr[2]));
      |         ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:306:9: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations]
  306 |         MPI_Type_struct(3, Dtypelens, Dtypeaddr, Dtypes, &PP_Data);
      |         ^~~~~~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:234:12: note: declared here
  234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *,
      |            ^~~~~~~~~~~~~~~
./ppuzzle.c: In function ‘PP_Final_Update’:
./ppuzzle.c:344:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  344 |         MPI_Address(&(DMVector[0]), &(Dtypeaddr[0]));
      |         ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:346:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  346 |         MPI_Address(&(Rates[0]), &(Dtypeaddr[1]));
      |         ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:348:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  348 |         MPI_Address(&(fracinv), &(Dtypeaddr[2]));
      |         ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:350:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  350 |         MPI_Address(&(Eval[0]), &(Dtypeaddr[3]));
      |         ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:352:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  352 |         MPI_Address(&(Evec[0][0]), &(Dtypeaddr[4]));
      |         ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:354:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  354 |         MPI_Address(&(Ievc[0][0]), &(Dtypeaddr[5]));
      |         ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:356:9: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations]
  356 |         MPI_Type_struct(6, Dtypelens, Dtypeaddr, Dtypes, &PP_Data);
      |         ^~~~~~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:234:12: note: declared here
  234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *,
      |            ^~~~~~~~~~~~~~~
./ppuzzle.c: In function ‘PP_SendSizes’:
./ppuzzle.c:722:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  722 |   MPI_Address(ints,     Dtypeaddr);
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:723:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  723 |   MPI_Address(doubles, (Dtypeaddr+1));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:725:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations]
  725 |   MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Sizes);
      |   ^~~~~~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:234:12: note: declared here
  234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *,
      |            ^~~~~~~~~~~~~~~
./ppuzzle.c: In function ‘PP_RecvSizes’:
./ppuzzle.c:800:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  800 |   MPI_Address(ints,     Dtypeaddr);
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:801:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  801 |   MPI_Address(doubles, (Dtypeaddr+1));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:803:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations]
  803 |   MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Sizes);
      |   ^~~~~~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:234:12: note: declared here
  234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *,
      |            ^~~~~~~~~~~~~~~
./ppuzzle.c: In function ‘PP_RecvData’:
./ppuzzle.c:892:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  892 |   MPI_Address(&(Seqpat[0][0]), &(Dtypeaddr[0]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:894:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  894 |   MPI_Address(&(Alias[0]), &(Dtypeaddr[1]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:896:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  896 |   MPI_Address(&(Weight[0]), &(Dtypeaddr[2]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:898:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  898 |   MPI_Address(&(constpat[0]), &(Dtypeaddr[3]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:900:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  900 |   MPI_Address(&(Rates[0]), &(Dtypeaddr[4]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:902:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  902 |   MPI_Address(&(Eval[0]), &(Dtypeaddr[5]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:904:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  904 |   MPI_Address(&(Freqtpm[0]), &(Dtypeaddr[6]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:906:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  906 |   MPI_Address(&(Evec[0][0]), &(Dtypeaddr[7]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:908:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  908 |   MPI_Address(&(Ievc[0][0]), &(Dtypeaddr[8]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:910:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  910 |   MPI_Address(&(iexp[0][0]), &(Dtypeaddr[9]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:912:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  912 |   MPI_Address(&(Distanmat[0][0]), &(Dtypeaddr[10]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:914:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  914 |   MPI_Address(&(ltprobr[0][0][0]), &(Dtypeaddr[11]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:916:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations]
  916 |   MPI_Type_struct(12, Dtypelens, Dtypeaddr, Dtypes, &PP_Data);
      |   ^~~~~~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:234:12: note: declared here
  234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *,
      |            ^~~~~~~~~~~~~~~
./ppuzzle.c: In function ‘PP_SendData’:
./ppuzzle.c:987:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  987 |   MPI_Address(&(Seqpat[0][0]), &(Dtypeaddr[0]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:989:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  989 |   MPI_Address(&(Alias[0]), &(Dtypeaddr[1]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:991:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  991 |   MPI_Address(&(Weight[0]), &(Dtypeaddr[2]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:993:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  993 |   MPI_Address(&(constpat[0]), &(Dtypeaddr[3]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:995:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  995 |   MPI_Address(&(Rates[0]), &(Dtypeaddr[4]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:997:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  997 |   MPI_Address(&(Eval[0]), &(Dtypeaddr[5]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:999:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
  999 |   MPI_Address(&(Freqtpm[0]), &(Dtypeaddr[6]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1001:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1001 |   MPI_Address(&(Evec[0][0]), &(Dtypeaddr[7]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1003:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1003 |   MPI_Address(&(Ievc[0][0]), &(Dtypeaddr[8]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1005:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1005 |   MPI_Address(&(iexp[0][0]), &(Dtypeaddr [9]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1007:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1007 |   MPI_Address(&(Distanmat[0][0]), &(Dtypeaddr[10]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1009:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1009 |   MPI_Address(&(ltprobr[0][0][0]), &(Dtypeaddr[11]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1011:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations]
 1011 |   MPI_Type_struct(12, Dtypelens, Dtypeaddr, Dtypes, &PP_Data);
      |   ^~~~~~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:234:12: note: declared here
  234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *,
      |            ^~~~~~~~~~~~~~~
./ppuzzle.c: In function ‘PP_SendQuart’:
./ppuzzle.c:1153:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1153 |   MPI_Address(ints,     Dtypeaddr);
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1154:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1154 |   MPI_Address(doubles, (Dtypeaddr+1));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1156:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations]
 1156 |   MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Quart);
      |   ^~~~~~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:234:12: note: declared here
  234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *,
      |            ^~~~~~~~~~~~~~~
./ppuzzle.c: In function ‘PP_RecvQuart’:
./ppuzzle.c:1204:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1204 |   MPI_Address(ints,     Dtypeaddr);
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1205:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1205 |   MPI_Address(doubles, (Dtypeaddr+1));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1207:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations]
 1207 |   MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Quart);
      |   ^~~~~~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:234:12: note: declared here
  234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *,
      |            ^~~~~~~~~~~~~~~
./ppuzzle.c: In function ‘PP_SendQuartBlock’:
./ppuzzle.c:1371:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1371 |   MPI_Address(ulis,  Dtypeaddr);
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1372:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1372 |   MPI_Address(ints, (Dtypeaddr+1));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1374:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations]
 1374 |   MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_QBlockSpecs);
      |   ^~~~~~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:234:12: note: declared here
  234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *,
      |            ^~~~~~~~~~~~~~~
./ppuzzle.c:1387:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1387 |   MPI_Address(trueaddr, DtypeaddrRes);
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1390:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1390 |   MPI_Address(bq, (DtypeaddrRes + 1));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1392:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations]
 1392 |   MPI_Type_struct(2, DtypelensRes, DtypeaddrRes, DtypesRes, &PP_QBlockRes);
      |   ^~~~~~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:234:12: note: declared here
  234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *,
      |            ^~~~~~~~~~~~~~~
./ppuzzle.c: In function ‘PP_RecvQuartBlock’:
./ppuzzle.c:1458:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1458 |         MPI_Address(ulis,  Dtypeaddr);
      |         ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1459:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1459 |         MPI_Address(ints, (Dtypeaddr+1));
      |         ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1461:9: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations]
 1461 |         MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_QBlockSpecs);
      |         ^~~~~~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:234:12: note: declared here
  234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *,
      |            ^~~~~~~~~~~~~~~
./ppuzzle.c:1489:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1489 |         MPI_Address(trueaddr,  DtypeaddrRes);
      |         ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1494:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1494 |         MPI_Address(bq, (DtypeaddrRes+1));
      |         ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1495:9: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations]
 1495 |         MPI_Type_struct(2, DtypelensRes, DtypeaddrRes, DtypesRes, &PP_QBlockRes);
      |         ^~~~~~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:234:12: note: declared here
  234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *,
      |            ^~~~~~~~~~~~~~~
./ppuzzle.c: In function ‘PP_SendAllQuarts’:
./ppuzzle.c:1640:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1640 |   MPI_Address(&(quartetinfo[0]), Dtypeaddr);
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1641:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations]
 1641 |   MPI_Type_struct(1, Dtypelens, Dtypeaddr, Dtypes, &PP_AllQuarts);
      |   ^~~~~~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:234:12: note: declared here
  234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *,
      |            ^~~~~~~~~~~~~~~
./ppuzzle.c: In function ‘PP_RecvAllQuarts’:
./ppuzzle.c:1689:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1689 |   MPI_Address(&(quartetinfo[0]), Dtypeaddr);
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1690:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations]
 1690 |   MPI_Type_struct(1, Dtypelens, Dtypeaddr, Dtypes, &PP_AllQuarts);
      |   ^~~~~~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:234:12: note: declared here
  234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *,
      |            ^~~~~~~~~~~~~~~
./ppuzzle.c: In function ‘PP_SendSplitsBlock’:
./ppuzzle.c:1751:5: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1751 |     MPI_Address(&(biparts[n][0][0]), &(Dtypeaddr[n]));
      |     ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1757:5: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1757 |     MPI_Address((*pstptr).tree, &(Dtypeaddr[(int)blocksize + n]));
      |     ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1767:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1767 |   MPI_Address(&(pstnumarr[0]), &(Dtypeaddr[((int)blocksize + pstnum)]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1769:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations]
 1769 |   MPI_Type_struct(((int)blocksize + pstnum + 1), Dtypelens, Dtypeaddr, Dtypes, &PP_Biparts);
      |   ^~~~~~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:234:12: note: declared here
  234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *,
      |            ^~~~~~~~~~~~~~~
./ppuzzle.c: In function ‘PP_RecvSplitsBlock’:
./ppuzzle.c:1846:5: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1846 |     MPI_Address(&((*bip)[n][0][0]), &(Dtypeaddr[n]));
      |     ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1852:5: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1852 |     MPI_Address(&(pstarr[n][0]), &(Dtypeaddr[(int)*blocksize + n]));
      |     ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1857:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 1857 |   MPI_Address(&(pstnumarr[0]), &(Dtypeaddr[(int)*blocksize + pstlistnum]));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:1859:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations]
 1859 |   MPI_Type_struct(((int)*blocksize + pstlistnum + 1), Dtypelens, Dtypeaddr, Dtypes, &PP_Biparts);
      |   ^~~~~~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:234:12: note: declared here
  234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *,
      |            ^~~~~~~~~~~~~~~
./ppuzzle.c: In function ‘PP_SendDone’:
./ppuzzle.c:2056:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 2056 |   MPI_Address(ints,     Dtypeaddr);
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:2057:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 2057 |   MPI_Address(doubles, (Dtypeaddr+1));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:2059:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations]
 2059 |   MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Stats);
      |   ^~~~~~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:234:12: note: declared here
  234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *,
      |            ^~~~~~~~~~~~~~~
./ppuzzle.c: In function ‘PP_RecvDone’:
./ppuzzle.c:2176:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 2176 |   MPI_Address(ints,     Dtypeaddr);
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:2177:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations]
 2177 |   MPI_Address(doubles, (Dtypeaddr+1));
      |   ^~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:237:12: note: declared here
  237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *)
      |            ^~~~~~~~~~~
./ppuzzle.c:2179:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations]
 2179 |   MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Stats);
      |   ^~~~~~~~~~~~~~~
In file included from ./ppuzzle.c:25:
/usr/include/mpi.h:234:12: note: declared here
  234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *,
      |            ^~~~~~~~~~~~~~~
make[3]: *** [Makefile:618: ppuzzle.o] Error 1
make[3]: *** Waiting for unfinished jobs....
make[3]: Leaving directory '/var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2/src'
make[2]: *** [Makefile:334: all-recursive] Error 1
make[2]: Leaving directory '/var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2/src'
make[1]: *** [Makefile:235: all] Error 2
make[1]: Leaving directory '/var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2/src'
make: *** [Makefile:148: all-recursive] Error 1
 * ERROR: sci-biology/tree-puzzle-5.2::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-biology/tree-puzzle-5.2::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-biology/tree-puzzle-5.2::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-biology:tree-puzzle-5.2:20210826-113859.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/tree-puzzle-5.2/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-biology/tree-puzzle-5.2/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2'
 * S: '/var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2'