* Package: sci-biology/tree-puzzle-5.2 * Repository: gentoo * Maintainer: sci-biology@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux mpi userland_GNU * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>> Unpacking source... >>> Unpacking tree-puzzle-5.2.tar.gz to /var/tmp/portage/sci-biology/tree-puzzle-5.2/work >>> Source unpacked in /var/tmp/portage/sci-biology/tree-puzzle-5.2/work >>> Preparing source in /var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2 ... * Applying tree-puzzle-impl-dec.patch ... [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2 ... * econf: updating tree-puzzle-5.2/config.sub with /usr/share/gnuconfig/config.sub * econf: updating tree-puzzle-5.2/config.guess with /usr/share/gnuconfig/config.guess ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --libdir=/usr/lib64 checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets ${MAKE}... yes checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc checking for C compiler default output... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes checking for style of include used by make... GNU checking dependency style of x86_64-pc-linux-gnu-gcc... none checking whether x86_64-pc-linux-gnu-gcc and cc understand -c and -o together... yes checking for a BSD-compatible install... /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c checking whether make sets ${MAKE}... (cached) yes checking for mpcc... no checking for hcc... no checking for mpicc... /usr/bin/mpicc checking for mpicc_lam... no checking for mpicc_mpich... no checking for cc... /usr/bin/cc checking whether /usr/bin/mpicc works as MPI compiler... yes checking whether /usr/bin/mpicc handles quotes correctly... yes checking whether x86_64-pc-linux-gnu-gcc handles quotes correctly... yes checking for main in -lm... yes checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for x86_64-pc-linux-gnu-gcc option to accept ANSI C... none needed checking for an ANSI C-conforming const... yes checking for size_t... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/sprng/Makefile config.status: creating doc/Makefile config.status: creating data/Makefile config.status: creating tests/Makefile config.status: creating src/config.h config.status: executing depfiles commands >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2 ... make -j4 Making all in src make[1]: Entering directory '/var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2/src' make all-recursive make[2]: Entering directory '/var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2/src' Making all in sprng make[3]: Entering directory '/var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2/src/sprng' x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -c makeseed.c x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -c store.c x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -c memory.c x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -c checkid.c x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -c lcg64.c x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -c primes-lcg64.c make[3]: Leaving directory '/var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2/src/sprng' make[3]: Entering directory '/var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2/src' x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./gamma.c && mv gamma.o sgamma.o x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./ml1.c && mv ml1.o sml1.o x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./ml2.c && mv ml2.o sml2.o x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./mlparam.c && mv mlparam.o smlparam.o x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./model1.c && mv model1.o smodel1.o x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./model2.c && mv model2.o smodel2.o x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./puzzle1.c && mv puzzle1.o spuzzle1.o ./puzzle1.c: In function ‘readallquarts’: ./puzzle1.c:294:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 294 | fscanf(ifp, "TREE-PUZZLE\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:295:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 295 | fscanf(ifp, "%s\n\n", dummyversion); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:297:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 297 | fscanf(ifp, "species: %d\n", &dummynspec); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:298:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 298 | fscanf(ifp, "quartets: %lu\n", &dummynquart); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:299:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 299 | fscanf(ifp, "bytes: %lu\n\n", &dummyblocklen); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:322:6: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 322 | fscanf(ifp, "%s\n", dummyname); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:335:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 335 | fread(&(quartetinfo[0]), sizeof(char), blocklen, ifp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c: In function ‘setoptions’: ./puzzle1.c:718:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 718 | scanf("%d", &locroot); | ^~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:776:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 776 | scanf("%lf", &fracinv); | ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:795:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 795 | scanf("%lf", &Geta); | ^~~~~~~~~~~~~~~~~~~ ./puzzle1.c:813:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 813 | scanf("%d", &numcats); | ^~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:915:65: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 915 | scanf("%d", &numclust); | ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1115:65: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1115 | scanf("%lf", &(Freqtpm[i])); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1149:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1149 | scanf("%lu", &Numtrial); | ^~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1164:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1164 | scanf("%lu", &lmqts); | ^~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1181:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1181 | scanf("%d", &outgroup); | ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1449:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1449 | scanf("%lf", &TSparam); | ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1478:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1478 | scanf("%lf", &YRparam); | ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1502:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1502 | scanf("%lf", &tstvf84); | ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1515:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1515 | scanf("%lf", >R_ACrate); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1524:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1524 | scanf("%lf", >R_AGrate); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1533:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1533 | scanf("%lf", >R_ATrate); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1542:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1542 | scanf("%lf", >R_CGrate); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1551:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1551 | scanf("%lf", >R_CTrate); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1560:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1560 | scanf("%lf", >R_GTrate); | ^~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./puzzle2.c && mv puzzle2.o spuzzle2.o x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./pstep.c && mv pstep.o spstep.o x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./util.c && mv util.o sutil.o x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./consensus.c && mv consensus.o sconsensus.o x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./treesort.c && mv treesort.o streesort.o x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./treetest.c && mv treetest.o streetest.o cd sprng && make makeseed.o store.o memory.o checkid.o lcg64.o primes-lcg64.o make[4]: Entering directory '/var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2/src/sprng' make[4]: 'makeseed.o' is up to date. make[4]: 'store.o' is up to date. make[4]: 'memory.o' is up to date. make[4]: 'checkid.o' is up to date. make[4]: 'lcg64.o' is up to date. make[4]: 'primes-lcg64.o' is up to date. make[4]: Leaving directory '/var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2/src/sprng' /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./gamma.c && mv gamma.o pgamma.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./ml1.c && mv ml1.o pml1.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./ml2.c && mv ml2.o pml2.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./mlparam.c && mv mlparam.o pmlparam.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./model1.c && mv model1.o pmodel1.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./model2.c && mv model2.o pmodel2.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./puzzle1.c && mv puzzle1.o ppuzzle1.o ./puzzle1.c: In function ‘readallquarts’: ./puzzle1.c:294:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 294 | fscanf(ifp, "TREE-PUZZLE\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:295:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 295 | fscanf(ifp, "%s\n\n", dummyversion); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:297:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 297 | fscanf(ifp, "species: %d\n", &dummynspec); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:298:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 298 | fscanf(ifp, "quartets: %lu\n", &dummynquart); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:299:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 299 | fscanf(ifp, "bytes: %lu\n\n", &dummyblocklen); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:322:6: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 322 | fscanf(ifp, "%s\n", dummyname); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:335:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 335 | fread(&(quartetinfo[0]), sizeof(char), blocklen, ifp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c: In function ‘setoptions’: ./puzzle1.c:718:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 718 | scanf("%d", &locroot); | ^~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:776:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 776 | scanf("%lf", &fracinv); | ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:795:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 795 | scanf("%lf", &Geta); | ^~~~~~~~~~~~~~~~~~~ ./puzzle1.c:813:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 813 | scanf("%d", &numcats); | ^~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:915:65: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 915 | scanf("%d", &numclust); | ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1115:65: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1115 | scanf("%lf", &(Freqtpm[i])); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1149:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1149 | scanf("%lu", &Numtrial); | ^~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1164:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1164 | scanf("%lu", &lmqts); | ^~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1181:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1181 | scanf("%d", &outgroup); | ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1449:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1449 | scanf("%lf", &TSparam); | ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1478:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1478 | scanf("%lf", &YRparam); | ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1502:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1502 | scanf("%lf", &tstvf84); | ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1515:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1515 | scanf("%lf", >R_ACrate); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1524:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1524 | scanf("%lf", >R_AGrate); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1533:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1533 | scanf("%lf", >R_ATrate); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1542:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1542 | scanf("%lf", >R_CGrate); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1551:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1551 | scanf("%lf", >R_CTrate); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1560:57: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1560 | scanf("%lf", >R_GTrate); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./puzzle2.c && mv puzzle2.o ppuzzle2.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./pstep.c && mv pstep.o ppstep.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./sched.c && mv sched.o psched.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./util.c && mv util.o putil.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./consensus.c && mv consensus.o pconsensus.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./treesort.c && mv treesort.o ptreesort.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./treetest.c && mv treetest.o ptreetest.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -march=native -fno-diagnostics-color -O2 -c ./ppuzzle.c ./ppuzzle.c: In function ‘PP_Printerror’: ./ppuzzle.c:159:38: error: ‘MPI_ERR_LASTCODE’ undeclared (first use in this function) 159 | if ((err > MPI_SUCCESS) && (err <= MPI_ERR_LASTCODE)) { | ^~~~~~~~~~~~~~~~ ./ppuzzle.c:159:38: note: each undeclared identifier is reported only once for each function it appears in ./ppuzzle.c: In function ‘PP_Update_EEI’: ./ppuzzle.c:300:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 300 | MPI_Address(&(Eval[0]), &(Dtypeaddr[0])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:302:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 302 | MPI_Address(&(Evec[0][0]), &(Dtypeaddr[1])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:304:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 304 | MPI_Address(&(Ievc[0][0]), &(Dtypeaddr[2])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:306:9: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations] 306 | MPI_Type_struct(3, Dtypelens, Dtypeaddr, Dtypes, &PP_Data); | ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:234:12: note: declared here 234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, | ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_Final_Update’: ./ppuzzle.c:344:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 344 | MPI_Address(&(DMVector[0]), &(Dtypeaddr[0])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:346:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 346 | MPI_Address(&(Rates[0]), &(Dtypeaddr[1])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:348:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 348 | MPI_Address(&(fracinv), &(Dtypeaddr[2])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:350:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 350 | MPI_Address(&(Eval[0]), &(Dtypeaddr[3])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:352:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 352 | MPI_Address(&(Evec[0][0]), &(Dtypeaddr[4])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:354:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 354 | MPI_Address(&(Ievc[0][0]), &(Dtypeaddr[5])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:356:9: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations] 356 | MPI_Type_struct(6, Dtypelens, Dtypeaddr, Dtypes, &PP_Data); | ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:234:12: note: declared here 234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, | ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendSizes’: ./ppuzzle.c:722:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 722 | MPI_Address(ints, Dtypeaddr); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:723:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 723 | MPI_Address(doubles, (Dtypeaddr+1)); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:725:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations] 725 | MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Sizes); | ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:234:12: note: declared here 234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, | ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvSizes’: ./ppuzzle.c:800:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 800 | MPI_Address(ints, Dtypeaddr); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:801:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 801 | MPI_Address(doubles, (Dtypeaddr+1)); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:803:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations] 803 | MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Sizes); | ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:234:12: note: declared here 234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, | ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvData’: ./ppuzzle.c:892:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 892 | MPI_Address(&(Seqpat[0][0]), &(Dtypeaddr[0])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:894:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 894 | MPI_Address(&(Alias[0]), &(Dtypeaddr[1])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:896:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 896 | MPI_Address(&(Weight[0]), &(Dtypeaddr[2])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:898:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 898 | MPI_Address(&(constpat[0]), &(Dtypeaddr[3])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:900:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 900 | MPI_Address(&(Rates[0]), &(Dtypeaddr[4])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:902:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 902 | MPI_Address(&(Eval[0]), &(Dtypeaddr[5])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:904:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 904 | MPI_Address(&(Freqtpm[0]), &(Dtypeaddr[6])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:906:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 906 | MPI_Address(&(Evec[0][0]), &(Dtypeaddr[7])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:908:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 908 | MPI_Address(&(Ievc[0][0]), &(Dtypeaddr[8])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:910:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 910 | MPI_Address(&(iexp[0][0]), &(Dtypeaddr[9])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:912:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 912 | MPI_Address(&(Distanmat[0][0]), &(Dtypeaddr[10])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:914:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 914 | MPI_Address(&(ltprobr[0][0][0]), &(Dtypeaddr[11])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:916:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations] 916 | MPI_Type_struct(12, Dtypelens, Dtypeaddr, Dtypes, &PP_Data); | ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:234:12: note: declared here 234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, | ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendData’: ./ppuzzle.c:987:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 987 | MPI_Address(&(Seqpat[0][0]), &(Dtypeaddr[0])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:989:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 989 | MPI_Address(&(Alias[0]), &(Dtypeaddr[1])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:991:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 991 | MPI_Address(&(Weight[0]), &(Dtypeaddr[2])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:993:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 993 | MPI_Address(&(constpat[0]), &(Dtypeaddr[3])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:995:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 995 | MPI_Address(&(Rates[0]), &(Dtypeaddr[4])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:997:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 997 | MPI_Address(&(Eval[0]), &(Dtypeaddr[5])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:999:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 999 | MPI_Address(&(Freqtpm[0]), &(Dtypeaddr[6])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1001:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1001 | MPI_Address(&(Evec[0][0]), &(Dtypeaddr[7])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1003:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1003 | MPI_Address(&(Ievc[0][0]), &(Dtypeaddr[8])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1005:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1005 | MPI_Address(&(iexp[0][0]), &(Dtypeaddr [9])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1007:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1007 | MPI_Address(&(Distanmat[0][0]), &(Dtypeaddr[10])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1009:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1009 | MPI_Address(&(ltprobr[0][0][0]), &(Dtypeaddr[11])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1011:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations] 1011 | MPI_Type_struct(12, Dtypelens, Dtypeaddr, Dtypes, &PP_Data); | ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:234:12: note: declared here 234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, | ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendQuart’: ./ppuzzle.c:1153:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1153 | MPI_Address(ints, Dtypeaddr); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1154:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1154 | MPI_Address(doubles, (Dtypeaddr+1)); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1156:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations] 1156 | MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Quart); | ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:234:12: note: declared here 234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, | ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvQuart’: ./ppuzzle.c:1204:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1204 | MPI_Address(ints, Dtypeaddr); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1205:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1205 | MPI_Address(doubles, (Dtypeaddr+1)); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1207:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations] 1207 | MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Quart); | ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:234:12: note: declared here 234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, | ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendQuartBlock’: ./ppuzzle.c:1371:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1371 | MPI_Address(ulis, Dtypeaddr); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1372:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1372 | MPI_Address(ints, (Dtypeaddr+1)); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1374:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations] 1374 | MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_QBlockSpecs); | ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:234:12: note: declared here 234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, | ^~~~~~~~~~~~~~~ ./ppuzzle.c:1387:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1387 | MPI_Address(trueaddr, DtypeaddrRes); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1390:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1390 | MPI_Address(bq, (DtypeaddrRes + 1)); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1392:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations] 1392 | MPI_Type_struct(2, DtypelensRes, DtypeaddrRes, DtypesRes, &PP_QBlockRes); | ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:234:12: note: declared here 234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, | ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvQuartBlock’: ./ppuzzle.c:1458:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1458 | MPI_Address(ulis, Dtypeaddr); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1459:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1459 | MPI_Address(ints, (Dtypeaddr+1)); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1461:9: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations] 1461 | MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_QBlockSpecs); | ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:234:12: note: declared here 234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, | ^~~~~~~~~~~~~~~ ./ppuzzle.c:1489:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1489 | MPI_Address(trueaddr, DtypeaddrRes); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1494:9: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1494 | MPI_Address(bq, (DtypeaddrRes+1)); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1495:9: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations] 1495 | MPI_Type_struct(2, DtypelensRes, DtypeaddrRes, DtypesRes, &PP_QBlockRes); | ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:234:12: note: declared here 234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, | ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendAllQuarts’: ./ppuzzle.c:1640:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1640 | MPI_Address(&(quartetinfo[0]), Dtypeaddr); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1641:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations] 1641 | MPI_Type_struct(1, Dtypelens, Dtypeaddr, Dtypes, &PP_AllQuarts); | ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:234:12: note: declared here 234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, | ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvAllQuarts’: ./ppuzzle.c:1689:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1689 | MPI_Address(&(quartetinfo[0]), Dtypeaddr); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1690:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations] 1690 | MPI_Type_struct(1, Dtypelens, Dtypeaddr, Dtypes, &PP_AllQuarts); | ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:234:12: note: declared here 234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, | ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendSplitsBlock’: ./ppuzzle.c:1751:5: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1751 | MPI_Address(&(biparts[n][0][0]), &(Dtypeaddr[n])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1757:5: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1757 | MPI_Address((*pstptr).tree, &(Dtypeaddr[(int)blocksize + n])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1767:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1767 | MPI_Address(&(pstnumarr[0]), &(Dtypeaddr[((int)blocksize + pstnum)])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1769:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations] 1769 | MPI_Type_struct(((int)blocksize + pstnum + 1), Dtypelens, Dtypeaddr, Dtypes, &PP_Biparts); | ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:234:12: note: declared here 234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, | ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvSplitsBlock’: ./ppuzzle.c:1846:5: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1846 | MPI_Address(&((*bip)[n][0][0]), &(Dtypeaddr[n])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1852:5: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1852 | MPI_Address(&(pstarr[n][0]), &(Dtypeaddr[(int)*blocksize + n])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1857:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 1857 | MPI_Address(&(pstnumarr[0]), &(Dtypeaddr[(int)*blocksize + pstlistnum])); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:1859:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations] 1859 | MPI_Type_struct(((int)*blocksize + pstlistnum + 1), Dtypelens, Dtypeaddr, Dtypes, &PP_Biparts); | ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:234:12: note: declared here 234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, | ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendDone’: ./ppuzzle.c:2056:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 2056 | MPI_Address(ints, Dtypeaddr); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:2057:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 2057 | MPI_Address(doubles, (Dtypeaddr+1)); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:2059:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations] 2059 | MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Stats); | ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:234:12: note: declared here 234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, | ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvDone’: ./ppuzzle.c:2176:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 2176 | MPI_Address(ints, Dtypeaddr); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:2177:3: warning: ‘MPI_Address’ is deprecated [-Wdeprecated-declarations] 2177 | MPI_Address(doubles, (Dtypeaddr+1)); | ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:237:12: note: declared here 237 | extern int MPI_Address(void *, /*@out@*/ MPI_Aint *) | ^~~~~~~~~~~ ./ppuzzle.c:2179:3: warning: ‘MPI_Type_struct’ is deprecated [-Wdeprecated-declarations] 2179 | MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Stats); | ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/include/mpi.h:234:12: note: declared here 234 | extern int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, | ^~~~~~~~~~~~~~~ make[3]: *** [Makefile:618: ppuzzle.o] Error 1 make[3]: *** Waiting for unfinished jobs.... make[3]: Leaving directory '/var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2/src' make[2]: *** [Makefile:334: all-recursive] Error 1 make[2]: Leaving directory '/var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2/src' make[1]: *** [Makefile:235: all] Error 2 make[1]: Leaving directory '/var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2/src' make: *** [Makefile:148: all-recursive] Error 1 * ERROR: sci-biology/tree-puzzle-5.2::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-biology/tree-puzzle-5.2::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-biology/tree-puzzle-5.2::gentoo'`. * The complete build log is located at '/var/log/portage/sci-biology:tree-puzzle-5.2:20210826-113859.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/tree-puzzle-5.2/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-biology/tree-puzzle-5.2/temp/environment'. * Working directory: '/var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2' * S: '/var/tmp/portage/sci-biology/tree-puzzle-5.2/work/tree-puzzle-5.2'