* Package: sci-biology/mira-4.0.2-r1 * Repository: gentoo * Maintainer: sci-biology@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox Unable to configure loopback interface: Operation not permitted >>> Unpacking source... >>> Unpacking mira-4.0.2.tar.bz2 to /var/tmp/portage/sci-biology/mira-4.0.2-r1/work >>> Unpacking mira_3rdparty_06-07-2012.tar.bz2 to /var/tmp/portage/sci-biology/mira-4.0.2-r1/work >>> Source unpacked in /var/tmp/portage/sci-biology/mira-4.0.2-r1/work Unable to configure loopback interface: Operation not permitted >>> Preparing source in /var/tmp/portage/sci-biology/mira-4.0.2-r1/work/mira-4.0.2 ... * Applying mira-4.0.2-boost-1.50.patch ... [ ok ] * Applying mira-4.0.2-cout.patch ... [ ok ] * Applying mira-4.0.2-cmath.patch ... [ ok ] * Running eautoreconf in '/var/tmp/portage/sci-biology/mira-4.0.2-r1/work/mira-4.0.2' ... * Running 'libtoolize --install --copy --force --automake' ... [ ok ] * Running 'aclocal -I m4' ... [ ok ] * Running 'autoconf --force' ... [ ok ] * Running 'automake --add-missing --copy --force-missing' ... [ ok ] * Running elibtoolize in: mira-4.0.2/ * Applying portage/1.2.0 patch ... * Applying sed/1.5.6 patch ... * Applying as-needed/2.4.3 patch ... >>> Source prepared. Unable to configure loopback interface: Operation not permitted >>> Configuring source in /var/tmp/portage/sci-biology/mira-4.0.2-r1/work/mira-4.0.2 ... * econf: updating mira-4.0.2/config.sub with /usr/share/gnuconfig/config.sub * econf: updating mira-4.0.2/config.guess with /usr/share/gnuconfig/config.guess ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/mira-4.0.2-r1 --htmldir=/usr/share/doc/mira-4.0.2-r1/html --libdir=/usr/lib64 --with-boost=/usr/lib64 --with-boost-libdir=/usr/lib64 --with-boost-thread=boost_thread-mt checking for a BSD-compatible install... /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '250' is supported by ustar format... yes checking whether GID '250' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether to add --prefix as include path... yes +++++++++++++++++++++++++++++++++++++ systemuname: Linux CFLAGS now: -O2 -march=native -pipe -I/usr/include CXXFLAGS now: -O2 -march=native -pipe -I/usr/include LDFLAGS now: -Wl,-O1 -Wl,--as-needed -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of x86_64-pc-linux-gnu-gcc... none checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes checking dependency style of x86_64-pc-linux-gnu-g++... none +++++++++++++++++++++++++++++++++++++ systemuname: Linux CFLAGS now: -O2 -march=native -pipe -I/usr/include CXXFLAGS now: -O2 -march=native -pipe -I/usr/include LDFLAGS now: -Wl,-O1 -Wl,--as-needed -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for int64_t... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -O2 -march=native -pipe -I/usr/include CXXFLAGS now: -DAJ_Linux64 -O2 -march=native -pipe -I/usr/include LDFLAGS now: -Wl,-O1 -Wl,--as-needed -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking whether long has 64bit... yes checking whether enabling 64bit compilation support... yes checking build system type... x86_64-pc-linux-gnu checking for compiler optimisation settings... +++++++++++++++++++++++++++++++++++++ CFLAGS now: -O2 -march=native -pipe -I/usr/include CXXFLAGS now: -DAJ_Linux64 -O2 -march=native -pipe -I/usr/include LDFLAGS now: -Wl,-O1 -Wl,--as-needed -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... 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Please attach the following file when seeking support: !!! /var/tmp/portage/sci-biology/mira-4.0.2-r1/work/mira-4.0.2/config.log * ERROR: sci-biology/mira-4.0.2-r1::gentoo failed (configure phase): * econf failed * * Call stack: * ebuild.sh, line 127: Called src_configure * environment, line 2405: Called econf '--with-boost=/usr/lib64' '--with-boost-libdir=/usr/lib64' '--with-boost-thread=boost_thread-mt' * phase-helpers.sh, line 711: Called __helpers_die 'econf failed' * isolated-functions.sh, line 112: Called die * The specific snippet of code: * die "$@" * * If you need support, post the output of `emerge --info '=sci-biology/mira-4.0.2-r1::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-biology/mira-4.0.2-r1::gentoo'`. * The complete build log is located at '/var/tmp/portage/sci-biology/mira-4.0.2-r1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-biology/mira-4.0.2-r1/temp/environment'. * Working directory: '/var/tmp/portage/sci-biology/mira-4.0.2-r1/work/mira-4.0.2' * S: '/var/tmp/portage/sci-biology/mira-4.0.2-r1/work/mira-4.0.2'