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Gentoo's Bugzilla – Attachment 721927 Details for
Bug 800617
sci-libs/io_lib-1.14.14 - /.../ld: ../.../libhtscodecs.a(tokenise_name3.o): relocation R_X86_64_PC32 against symbol tok_key can no
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sci-libs:io_lib-1.14.14:20210704-225759.log
sci-libs:io_lib-1.14.14:20210704-225759.log (text/plain), 125.32 KB, created by
Toralf Förster
on 2021-07-05 07:31:44 UTC
(
hide
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Description:
sci-libs:io_lib-1.14.14:20210704-225759.log
Filename:
MIME Type:
Creator:
Toralf Förster
Created:
2021-07-05 07:31:44 UTC
Size:
125.32 KB
patch
obsolete
> * Package: sci-libs/io_lib-1.14.14 > * Repository: gentoo > * Maintainer: sci@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox splitdebug userpriv usersandbox > >>>> Unpacking source... >>>> Unpacking io_lib-1.14.14.tar.gz to /var/tmp/portage/sci-libs/io_lib-1.14.14/work >>>> Source unpacked in /var/tmp/portage/sci-libs/io_lib-1.14.14/work >>>> Preparing source in /var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14 ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14 ... > * econf: updating io_lib-1.14.14/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating io_lib-1.14.14/config.guess with /usr/share/gnuconfig/config.guess >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/io_lib-1.14.14 --htmldir=/usr/share/doc/io_lib-1.14.14/html --with-sysroot=/ --libdir=/usr/lib64 >checking for a BSD-compatible install... /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make supports nested variables... yes >checking whether to enable maintainer-specific portions of Makefiles... no >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes >checking for style of include used by make... GNU >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking how to print strings... printf >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B >checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... / >checking for a working dd... /bin/dd >checking how to truncate binary pipes... /bin/dd bs=4096 count=1 >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... yes >checking for grep that handles long lines and -e... (cached) /bin/grep >checking for C compiler warning flags... -Wall >checking for gawk... (cached) gawk >checking for curl-config... /usr/bin/curl-config >checking for the version of libcurl... 7.77.0 >checking whether libcurl just needs -lcurl... yes >checking whether libcurl is usable... yes >checking for curl_free... yes >checking for inflateEnd in -lz... yes >checking zlib.h usability... yes >checking zlib.h presence... yes >checking for zlib.h... yes >checking for library containing gethostbyname... none required >checking for library containing socket... none required >checking for BZ2_bzBuffToBuffCompress in -lbz2... yes >checking for lzma_easy_buffer_encode in -llzma... yes >checking for bsc_compress in -lbsc... no >checking whether byte ordering is bigendian... no >checking for ANSI C header files... (cached) yes >checking for sys/wait.h that is POSIX.1 compatible... yes >checking fcntl.h usability... yes >checking fcntl.h presence... yes >checking for fcntl.h... yes >checking limits.h usability... yes >checking limits.h presence... yes >checking for limits.h... yes >checking for unistd.h... (cached) yes >checking malloc.h usability... yes >checking malloc.h presence... yes >checking for malloc.h... yes >checking for zlib.h... (cached) yes >checking stdio_ext.h usability... yes >checking stdio_ext.h presence... yes >checking for stdio_ext.h... yes >checking whether byte ordering is bigendian... (cached) no >checking size of short... 2 >checking size of int... 4 >checking size of long... 8 >checking for inline... inline >checking for mode_t... yes >checking for fileno... yes >checking for fstat... yes >checking for mallopt... yes >checking for special C compiler options needed for large files... no >checking for _FILE_OFFSET_BITS value needed for large files... no >checking for _LARGEFILE_SOURCE value needed for large files... no >checking for stdlib.h... (cached) yes >checking for unistd.h... (cached) yes >checking for sys/param.h... yes >checking for getpagesize... yes >checking for working mmap... yes >checking for library containing pthread_join... -lpthread >checking for library containing cos... -lm >checking for strdup... yes >checking for fsync... yes >checking that generated files are newer than configure... done >=== configuring in htscodecs (/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs) >configure: running /bin/sh ./configure '--prefix=/usr' --disable-option-checking '--build=x86_64-pc-linux-gnu' '--host=x86_64-pc-linux-gnu' '--mandir=/usr/share/man' '--infodir=/usr/share/info' '--datadir=/usr/share' '--sysconfdir=/etc' '--localstatedir=/var/lib' '--disable-dependency-tracking' '--disable-silent-rules' '--docdir=/usr/share/doc/io_lib-1.14.14' '--htmldir=/usr/share/doc/io_lib-1.14.14/html' '--with-sysroot=/' '--libdir=/usr/lib64' 'build_alias=x86_64-pc-linux-gnu' 'host_alias=x86_64-pc-linux-gnu' 'CFLAGS=-pipe -march=native -fno-diagnostics-color -O2 ' 'LDFLAGS=-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0' '--disable-shared' '--with-pic' '--srcdir=.' --cache-file= >checking for a BSD-compatible install... /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make supports nested variables... yes >checking whether to enable maintainer-specific portions of Makefiles... no >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes >checking for style of include used by make... GNU >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking how to print strings... printf >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B >checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... / >checking for a working dd... /bin/dd >checking how to truncate binary pipes... /bin/dd bs=4096 count=1 >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... no >checking whether to build static libraries... yes >checking for grep that handles long lines and -e... (cached) /bin/grep >checking for C compiler warning flags... -Wall >checking for inflateEnd in -lz... yes >checking zlib.h usability... yes >checking zlib.h presence... yes >checking for zlib.h... yes >checking for BZ2_bzBuffToBuffCompress in -lbz2... yes >checking for ANSI C header files... (cached) yes >checking for sys/wait.h that is POSIX.1 compatible... yes >checking fcntl.h usability... yes >checking fcntl.h presence... yes >checking for fcntl.h... yes >checking limits.h usability... yes >checking limits.h presence... yes >checking for limits.h... yes >checking for unistd.h... (cached) yes >checking malloc.h usability... yes >checking malloc.h presence... yes >checking for malloc.h... yes >checking for zlib.h... (cached) yes >checking for library containing pthread_join... -lpthread >checking that generated files are newer than configure... done >configure: creating ./config.status >config.status: creating Makefile >config.status: creating htscodecs/Makefile >config.status: creating tests/Makefile >config.status: creating config.h >config.status: executing depfiles commands >config.status: executing libtool commands >configure: creating ./config.status >config.status: creating Makefile >config.status: creating io_lib/Makefile >config.status: creating progs/Makefile >config.status: creating tests/Makefile >config.status: creating io_lib-config >config.status: creating io_lib/os.h >config.status: creating io_lib/version.h >config.status: creating io_lib_config.h >config.status: executing depfiles commands >config.status: executing libtool commands > >-------------------------------------------------- >CONFIGURE SUMMARY >-------------------------------------------------- >Bzip2 enabled: yes >lzma enabled: yes >custom-buffering enabled: yes >Using own crc: yes >Libcurl enabled: yes >Libdeflate enabled: no >have libbsc: no >Have zstd: no > >CC: x86_64-pc-linux-gnu-gcc >CFLAGS: -Wall -pipe -march=native -fno-diagnostics-color -O2 >LDFLAGS: -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 >LIBS: -lm -lpthread -llzma -lbz2 >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14 ... >make -j3 >make all-recursive >make[1]: Entering directory '/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14' >Making all in htscodecs >make[2]: Entering directory '/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs' >make all-recursive >make[3]: Entering directory '/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs' >Making all in htscodecs >make[4]: Entering directory '/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/htscodecs' >Update version.h: #define HTSCODECS_VERSION_TEXT "1.0" >make all-am >make[5]: Entering directory '/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/htscodecs' >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o pack.lo pack.c >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o rle.lo rle.c >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o fqzcomp_qual.lo fqzcomp_qual.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o pack.lo pack.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/htscodecs"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406400}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406399}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c pack.c -o pack.o > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o rle.lo rle.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/htscodecs"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406400}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406399}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c rle.c -o rle.o > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o fqzcomp_qual.lo fqzcomp_qual.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/htscodecs"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406400}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406399}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c fqzcomp_qual.c -o fqzcomp_qual.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o rANS_static.lo rANS_static.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o rANS_static.lo rANS_static.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/htscodecs"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406400}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406399}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c rANS_static.c -o rANS_static.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o rANS_static4x16pr.lo rANS_static4x16pr.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o rANS_static4x16pr.lo rANS_static4x16pr.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/htscodecs"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406400}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406399}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c rANS_static4x16pr.c -o rANS_static4x16pr.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o tokenise_name3.lo tokenise_name3.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o tokenise_name3.lo tokenise_name3.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/htscodecs"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406400}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406399}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c tokenise_name3.c -o tokenise_name3.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o arith_dynamic.lo arith_dynamic.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o arith_dynamic.lo arith_dynamic.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/htscodecs"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406400}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406399}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c arith_dynamic.c -o arith_dynamic.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o htscodecs.lo htscodecs.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o htscodecs.lo htscodecs.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/htscodecs"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406400}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406399}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c htscodecs.c -o htscodecs.o >rdlibtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -Wall -pipe -march=native -fno-diagnostics-color -O2 -version-info 2:1:0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libhtscodecs.la -rpath /usr/lib64 pack.lo rle.lo fqzcomp_qual.lo rANS_static.lo rANS_static4x16pr.lo tokenise_name3.lo arith_dynamic.lo htscodecs.lo -lz -lpthread -lbz2 > > > >rdlibtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -Wall -pipe -march=native -fno-diagnostics-color -O2 -version-info 2:1:0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libhtscodecs.la -rpath /usr/lib64 pack.lo rle.lo fqzcomp_qual.lo rANS_static.lo rANS_static4x16pr.lo tokenise_name3.lo arith_dynamic.lo htscodecs.lo -lz -lpthread -lbz2 > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/htscodecs"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406400}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406399}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/libtool". >rdlibtool: link: ln -s libhtscodecs.so.def .libs/libhtscodecs.so.def.linux >rdlibtool: link: ln -s libhtscodecs.so.def.linux .libs/libhtscodecs.so.def.host >rdlibtool: link: ar crs .libs/libhtscodecs.a pack.o rle.o fqzcomp_qual.o rANS_static.o rANS_static4x16pr.o tokenise_name3.o arith_dynamic.o htscodecs.o >rdlibtool: link: ln -s /dev/null .libs/libhtscodecs.so.def >rdlibtool: link: ln -s /dev/null .libs/libhtscodecs.so.disabled >rdlibtool: link: ln -s ../libhtscodecs.la .libs/libhtscodecs.la >rdlibtool: link: ln -s ../libhtscodecs.la .libs/libhtscodecs.lai >make[5]: Leaving directory '/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/htscodecs' >make[4]: Leaving directory '/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/htscodecs' >Making all in tests >make[4]: Entering directory '/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/tests' >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o rANS_static4x16pr_test.o rANS_static4x16pr_test.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o tokenise_name3_test.o tokenise_name3_test.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o arith_dynamic_test.o arith_dynamic_test.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o rANS_static_test.o rANS_static_test.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o fqzcomp_qual_test.o fqzcomp_qual_test.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o varint_test.o varint_test.c >rdlibtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -Wall -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o rans4x16pr rANS_static4x16pr_test.o ../htscodecs/libhtscodecs.la -lm -lpthread -lbz2 > > > >rdlibtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -Wall -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o rans4x16pr rANS_static4x16pr_test.o ../htscodecs/libhtscodecs.la -lm -lpthread -lbz2 > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/tests"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406445}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406399}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/libtool". >rdlibtool: link: x86_64-pc-linux-gnu-gcc rANS_static4x16pr_test.o ../htscodecs/.libs/libhtscodecs.a -Wall -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -lz -lpthread -lbz2 -lm -lpthread -lbz2 -o .libs/rans4x16pr >rdlibtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -Wall -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o tokenise_name3 tokenise_name3_test.o ../htscodecs/libhtscodecs.la -lm -lpthread -lbz2 > > > >rdlibtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -Wall -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o tokenise_name3 tokenise_name3_test.o ../htscodecs/libhtscodecs.la -lm -lpthread -lbz2 > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/tests"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406445}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406399}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/libtool". >rdlibtool: link: x86_64-pc-linux-gnu-gcc tokenise_name3_test.o ../htscodecs/.libs/libhtscodecs.a -Wall -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -lz -lpthread -lbz2 -lm -lpthread -lbz2 -o .libs/tokenise_name3 >rdlibtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -Wall -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o arith_dynamic arith_dynamic_test.o ../htscodecs/libhtscodecs.la -lm -lpthread -lbz2 > > > >rdlibtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -Wall -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o arith_dynamic arith_dynamic_test.o ../htscodecs/libhtscodecs.la -lm -lpthread -lbz2 > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/tests"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406445}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406399}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/libtool". >rdlibtool: link: x86_64-pc-linux-gnu-gcc arith_dynamic_test.o ../htscodecs/.libs/libhtscodecs.a -Wall -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -lz -lpthread -lbz2 -lm -lpthread -lbz2 -o .libs/arith_dynamic >rdlibtool: link: ln -s ../tokenise_name3 .libs/tokenise_name3.exe.wrapper >rdlibtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -Wall -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o rans4x8 rANS_static_test.o ../htscodecs/libhtscodecs.la -lm -lpthread -lbz2 >rdlibtool: link: ln -s ../rans4x16pr .libs/rans4x16pr.exe.wrapper > > > >rdlibtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -Wall -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o rans4x8 rANS_static_test.o ../htscodecs/libhtscodecs.la -lm -lpthread -lbz2 > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/tests"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406445}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406399}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/libtool". >rdlibtool: link: x86_64-pc-linux-gnu-gcc rANS_static_test.o ../htscodecs/.libs/libhtscodecs.a -Wall -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -lz -lpthread -lbz2 -lm -lpthread -lbz2 -o .libs/rans4x8 >rdlibtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -Wall -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o fqzcomp_qual fqzcomp_qual_test.o ../htscodecs/libhtscodecs.la -lm -lpthread -lbz2 > > > >rdlibtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -Wall -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o fqzcomp_qual fqzcomp_qual_test.o ../htscodecs/libhtscodecs.la -lm -lpthread -lbz2 > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/tests"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406445}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406399}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/libtool". >rdlibtool: link: x86_64-pc-linux-gnu-gcc fqzcomp_qual_test.o ../htscodecs/.libs/libhtscodecs.a -Wall -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -lz -lpthread -lbz2 -lm -lpthread -lbz2 -o .libs/fqzcomp_qual >rdlibtool: link: ln -s ../arith_dynamic .libs/arith_dynamic.exe.wrapper >rdlibtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -Wall -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o varint varint_test.o ../htscodecs/libhtscodecs.la -lm -lpthread -lbz2 > > > >rdlibtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -Wall -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o varint varint_test.o ../htscodecs/libhtscodecs.la -lm -lpthread -lbz2 > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/tests"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406445}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406399}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/libtool". >rdlibtool: link: x86_64-pc-linux-gnu-gcc varint_test.o ../htscodecs/.libs/libhtscodecs.a -Wall -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -lz -lpthread -lbz2 -lm -lpthread -lbz2 -o .libs/varint >rdlibtool: link: ln -s ../rans4x8 .libs/rans4x8.exe.wrapper >rdlibtool: link: ln -s ../fqzcomp_qual .libs/fqzcomp_qual.exe.wrapper >rdlibtool: link: ln -s ../varint .libs/varint.exe.wrapper >make[4]: Leaving directory '/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs/tests' >make[4]: Entering directory '/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs' >make[4]: Leaving directory '/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs' >make[3]: Leaving directory '/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs' >make[2]: Leaving directory '/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/htscodecs' >Making all in io_lib >make[2]: Entering directory '/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib' >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-Read.lo `test -f 'Read.c' || echo './'`Read.c >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-scf_extras.lo `test -f 'scf_extras.c' || echo './'`scf_extras.c >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-translate.lo `test -f 'translate.c' || echo './'`translate.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-Read.lo Read.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c Read.c -DPIC -fPIC -o .libs/libstaden_read_la-Read.o > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-scf_extras.lo scf_extras.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c scf_extras.c -DPIC -fPIC -o .libs/libstaden_read_la-scf_extras.o > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-translate.lo translate.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c translate.c -DPIC -fPIC -o .libs/libstaden_read_la-translate.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c scf_extras.c -o libstaden_read_la-scf_extras.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c Read.c -o libstaden_read_la-Read.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-compression.lo `test -f 'compression.c' || echo './'`compression.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-compression.lo compression.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c compression.c -DPIC -fPIC -o .libs/libstaden_read_la-compression.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c translate.c -o libstaden_read_la-translate.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-ztr.lo `test -f 'ztr.c' || echo './'`ztr.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-ztr.lo ztr.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c ztr.c -DPIC -fPIC -o .libs/libstaden_read_la-ztr.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-ztr_translate.lo `test -f 'ztr_translate.c' || echo './'`ztr_translate.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-ztr_translate.lo ztr_translate.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c ztr_translate.c -DPIC -fPIC -o .libs/libstaden_read_la-ztr_translate.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c ztr.c -o libstaden_read_la-ztr.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c ztr_translate.c -o libstaden_read_la-ztr_translate.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-deflate_interlaced.lo `test -f 'deflate_interlaced.c' || echo './'`deflate_interlaced.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-deflate_interlaced.lo deflate_interlaced.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c deflate_interlaced.c -DPIC -fPIC -o .libs/libstaden_read_la-deflate_interlaced.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c compression.c -o libstaden_read_la-compression.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-fpoint.lo `test -f 'fpoint.c' || echo './'`fpoint.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-fpoint.lo fpoint.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c fpoint.c -DPIC -fPIC -o .libs/libstaden_read_la-fpoint.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c deflate_interlaced.c -o libstaden_read_la-deflate_interlaced.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c fpoint.c -o libstaden_read_la-fpoint.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-seqIOABI.lo `test -f 'seqIOABI.c' || echo './'`seqIOABI.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-seqIOABI.lo seqIOABI.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c seqIOABI.c -DPIC -fPIC -o .libs/libstaden_read_la-seqIOABI.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-seqIOALF.lo `test -f 'seqIOALF.c' || echo './'`seqIOALF.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-seqIOALF.lo seqIOALF.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c seqIOALF.c -DPIC -fPIC -o .libs/libstaden_read_la-seqIOALF.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c seqIOALF.c -o libstaden_read_la-seqIOALF.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c seqIOABI.c -o libstaden_read_la-seqIOABI.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-expFileIO.lo `test -f 'expFileIO.c' || echo './'`expFileIO.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-expFileIO.lo expFileIO.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c expFileIO.c -DPIC -fPIC -o .libs/libstaden_read_la-expFileIO.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-seqIOPlain.lo `test -f 'seqIOPlain.c' || echo './'`seqIOPlain.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-seqIOPlain.lo seqIOPlain.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c seqIOPlain.c -DPIC -fPIC -o .libs/libstaden_read_la-seqIOPlain.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c seqIOPlain.c -o libstaden_read_la-seqIOPlain.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-misc_scf.lo `test -f 'misc_scf.c' || echo './'`misc_scf.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-misc_scf.lo misc_scf.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c misc_scf.c -DPIC -fPIC -o .libs/libstaden_read_la-misc_scf.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-read_scf.lo `test -f 'read_scf.c' || echo './'`read_scf.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-read_scf.lo read_scf.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c read_scf.c -DPIC -fPIC -o .libs/libstaden_read_la-read_scf.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c misc_scf.c -o libstaden_read_la-misc_scf.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c expFileIO.c -o libstaden_read_la-expFileIO.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-write_scf.lo `test -f 'write_scf.c' || echo './'`write_scf.c >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c read_scf.c -o libstaden_read_la-read_scf.o > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-write_scf.lo write_scf.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c write_scf.c -DPIC -fPIC -o .libs/libstaden_read_la-write_scf.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-sff.lo `test -f 'sff.c' || echo './'`sff.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-sff.lo sff.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c sff.c -DPIC -fPIC -o .libs/libstaden_read_la-sff.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c write_scf.c -o libstaden_read_la-write_scf.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c sff.c -o libstaden_read_la-sff.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-srf.lo `test -f 'srf.c' || echo './'`srf.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-srf.lo srf.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c srf.c -DPIC -fPIC -o .libs/libstaden_read_la-srf.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-array.lo `test -f 'array.c' || echo './'`array.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-array.lo array.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c array.c -DPIC -fPIC -o .libs/libstaden_read_la-array.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-compress.lo `test -f 'compress.c' || echo './'`compress.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-compress.lo compress.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c compress.c -DPIC -fPIC -o .libs/libstaden_read_la-compress.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c array.c -o libstaden_read_la-array.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-error.lo `test -f 'error.c' || echo './'`error.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-error.lo error.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c error.c -DPIC -fPIC -o .libs/libstaden_read_la-error.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c compress.c -o libstaden_read_la-compress.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c error.c -o libstaden_read_la-error.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-files.lo `test -f 'files.c' || echo './'`files.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-files.lo files.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c files.c -DPIC -fPIC -o .libs/libstaden_read_la-files.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-find.lo `test -f 'find.c' || echo './'`find.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-find.lo find.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c find.c -DPIC -fPIC -o .libs/libstaden_read_la-find.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c srf.c -o libstaden_read_la-srf.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c files.c -o libstaden_read_la-files.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c find.c -o libstaden_read_la-find.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-mach-io.lo `test -f 'mach-io.c' || echo './'`mach-io.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-mach-io.lo mach-io.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c mach-io.c -DPIC -fPIC -o .libs/libstaden_read_la-mach-io.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-open_trace_file.lo `test -f 'open_trace_file.c' || echo './'`open_trace_file.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-open_trace_file.lo open_trace_file.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c open_trace_file.c -DPIC -fPIC -o .libs/libstaden_read_la-open_trace_file.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c mach-io.c -o libstaden_read_la-mach-io.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-read_alloc.lo `test -f 'read_alloc.c' || echo './'`read_alloc.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-read_alloc.lo read_alloc.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c read_alloc.c -DPIC -fPIC -o .libs/libstaden_read_la-read_alloc.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-strings.lo `test -f 'strings.c' || echo './'`strings.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-strings.lo strings.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c strings.c -DPIC -fPIC -o .libs/libstaden_read_la-strings.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c read_alloc.c -o libstaden_read_la-read_alloc.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c strings.c -o libstaden_read_la-strings.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-traceType.lo `test -f 'traceType.c' || echo './'`traceType.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-traceType.lo traceType.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c traceType.c -DPIC -fPIC -o .libs/libstaden_read_la-traceType.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c open_trace_file.c -o libstaden_read_la-open_trace_file.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-xalloc.lo `test -f 'xalloc.c' || echo './'`xalloc.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-xalloc.lo xalloc.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c traceType.crdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. > -o libstaden_read_la-traceType.o >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c xalloc.c -DPIC -fPIC -o .libs/libstaden_read_la-xalloc.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c xalloc.c -o libstaden_read_la-xalloc.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-vlen.lo `test -f 'vlen.c' || echo './'`vlen.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-vlen.lo vlen.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c vlen.c -DPIC -fPIC -o .libs/libstaden_read_la-vlen.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-hash_table.lo `test -f 'hash_table.c' || echo './'`hash_table.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-hash_table.lo hash_table.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c hash_table.c -DPIC -fPIC -o .libs/libstaden_read_la-hash_table.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c vlen.c -o libstaden_read_la-vlen.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-jenkins_lookup3.lo `test -f 'jenkins_lookup3.c' || echo './'`jenkins_lookup3.c >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-mFILE.lo `test -f 'mFILE.c' || echo './'`mFILE.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-jenkins_lookup3.lo jenkins_lookup3.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c jenkins_lookup3.c -DPIC -fPIC -o .libs/libstaden_read_la-jenkins_lookup3.o > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-mFILE.lo mFILE.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c mFILE.c -DPIC -fPIC -o .libs/libstaden_read_la-mFILE.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c jenkins_lookup3.c -o libstaden_read_la-jenkins_lookup3.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c mFILE.c -o libstaden_read_la-mFILE.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-pooled_alloc.lo `test -f 'pooled_alloc.c' || echo './'`pooled_alloc.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-pooled_alloc.lo pooled_alloc.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c pooled_alloc.c -DPIC -fPIC -o .libs/libstaden_read_la-pooled_alloc.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c pooled_alloc.c -o libstaden_read_la-pooled_alloc.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-bam.lo `test -f 'bam.c' || echo './'`bam.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-bam.lo bam.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c bam.c -DPIC -fPIC -o .libs/libstaden_read_la-bam.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-sam_header.lo `test -f 'sam_header.c' || echo './'`sam_header.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-sam_header.lo sam_header.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c sam_header.c -DPIC -fPIC -o .libs/libstaden_read_la-sam_header.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c hash_table.c -o libstaden_read_la-hash_table.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c sam_header.c -o libstaden_read_la-sam_header.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-cram_codecs.lo `test -f 'cram_codecs.c' || echo './'`cram_codecs.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-cram_codecs.lo cram_codecs.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c cram_codecs.c -DPIC -fPIC -o .libs/libstaden_read_la-cram_codecs.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-cram_encode.lo `test -f 'cram_encode.c' || echo './'`cram_encode.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-cram_encode.lo cram_encode.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c cram_encode.c -DPIC -fPIC -o .libs/libstaden_read_la-cram_encode.o >In file included from /usr/include/string.h:519, > from bam.c:44: >In function âmemcpyâ, > inlined from âbam_cigar2tagâ at bam.c:1794:5, > inlined from âbam_put_seqâ at bam.c:3891:10: >/usr/include/bits/string_fortified.h:29:10: warning: writing 8 bytes into a region of size 1 [-Wstringop-overflow=] > 29 | return __builtin___memcpy_chk (__dest, __src, __len, > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > 30 | __glibc_objsize0 (__dest)); > | ~~~~~~~~~~~~~~~~~~~~~~~~~~ >In file included from bam.c:59: >bam.c: In function âbam_put_seqâ: >../io_lib/bam.h:102:19: note: destination object âdataâ of size 1 > 102 | unsigned char data; /* unknown size */ > | ^~~~ >In function âbam_cigar2tagâ, > inlined from âbam_put_seqâ at bam.c:3891:10: >bam.c:1811:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] > 1811 | *ep++ = 'G'; > | ~~~~~~^~~~~ >In file included from bam.c:59: >bam.c: In function âbam_put_seqâ: >../io_lib/bam.h:102:19: note: at offset 1 into destination object âdataâ of size 1 > 102 | unsigned char data; /* unknown size */ > | ^~~~ >In function âbam_cigar2tagâ, > inlined from âbam_put_seqâ at bam.c:3891:10: >bam.c:1812:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] > 1812 | *ep++ = 'B'; > | ~~~~~~^~~~~ >In file included from bam.c:59: >bam.c: In function âbam_put_seqâ: >../io_lib/bam.h:102:19: note: at offset [2, 3] into destination object âdataâ of size 1 > 102 | unsigned char data; /* unknown size */ > | ^~~~ >In function âbam_cigar2tagâ, > inlined from âbam_put_seqâ at bam.c:3891:10: >bam.c:1813:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] > 1813 | *ep++ = 'I'; > | ~~~~~~^~~~~ >In file included from bam.c:59: >bam.c: In function âbam_put_seqâ: >../io_lib/bam.h:102:19: note: at offset [3, 4] into destination object âdataâ of size 1 > 102 | unsigned char data; /* unknown size */ > | ^~~~ >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c bam.c -o libstaden_read_la-bam.o >In file included from /usr/include/string.h:519, > from bam.c:44: >In function âmemcpyâ, > inlined from âbam_cigar2tagâ at bam.c:1794:5, > inlined from âbam_put_seqâ at bam.c:3891:10: >/usr/include/bits/string_fortified.h:29:10: warning: writing 8 bytes into a region of size 1 [-Wstringop-overflow=] > 29 | return __builtin___memcpy_chk (__dest, __src, __len, > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > 30 | __glibc_objsize0 (__dest)); > | ~~~~~~~~~~~~~~~~~~~~~~~~~~ >In file included from bam.c:59: >bam.c: In function âbam_put_seqâ: >../io_lib/bam.h:102:19: note: destination object âdataâ of size 1 > 102 | unsigned char data; /* unknown size */ > | ^~~~ >In function âbam_cigar2tagâ, > inlined from âbam_put_seqâ at bam.c:3891:10: >bam.c:1811:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] > 1811 | *ep++ = 'G'; > | ~~~~~~^~~~~ >In file included from bam.c:59: >bam.c: In function âbam_put_seqâ: >../io_lib/bam.h:102:19: note: at offset 1 into destination object âdataâ of size 1 > 102 | unsigned char data; /* unknown size */ > | ^~~~ >In function âbam_cigar2tagâ, > inlined from âbam_put_seqâ at bam.c:3891:10: >bam.c:1812:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] > 1812 | *ep++ = 'B'; > | ~~~~~~^~~~~ >In file included from bam.c:59: >bam.c: In function âbam_put_seqâ: >../io_lib/bam.h:102:19: note: at offset [2, 3] into destination object âdataâ of size 1 > 102 | unsigned char data; /* unknown size */ > | ^~~~ >In function âbam_cigar2tagâ, > inlined from âbam_put_seqâ at bam.c:3891:10: >bam.c:1813:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] > 1813 | *ep++ = 'I'; > | ~~~~~~^~~~~ >In file included from bam.c:59: >bam.c: In function âbam_put_seqâ: >../io_lib/bam.h:102:19: note: at offset [3, 4] into destination object âdataâ of size 1 > 102 | unsigned char data; /* unknown size */ > | ^~~~ >In function âbam_cigar2tagâ, > inlined from âbam_put_seqâ at bam.c:3891:10: >bam.c:1820:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] > 1820 | *ep++ = 0; > | ~~~~~~^~~ >In file included from bam.c:59: >bam.c: In function âbam_put_seqâ: >../io_lib/bam.h:102:19: note: at offset [262152, 2147483656] into destination object âdataâ of size 1 > 102 | unsigned char data; /* unknown size */ > | ^~~~ >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c cram_codecs.c -o libstaden_read_la-cram_codecs.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-cram_decode.lo `test -f 'cram_decode.c' || echo './'`cram_decode.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-cram_decode.lo cram_decode.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c cram_decode.c -DPIC -fPIC -o .libs/libstaden_read_la-cram_decode.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c cram_encode.c -o libstaden_read_la-cram_encode.o >cram_decode.c: In function âcram_to_bamâ: >cram_decode.c:3230:30: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] > 3230 | *aux++ = 'R'; *aux++ = 'G'; *aux++ = 'Z'; > | ~~~~~~~^~~~~ >In file included from ../io_lib/cram_structs.h:68, > from ../io_lib/cram.h:57, > from cram_decode.c:56: >../io_lib/bam.h:102:19: note: at offset 1 into destination object âdataâ of size 1 > 102 | unsigned char data; /* unknown size */ > | ^~~~ >../io_lib/bam.h:102:19: note: at offset 1 into destination object âdataâ of size 1 >cram_decode.c:3230:44: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] > 3230 | *aux++ = 'R'; *aux++ = 'G'; *aux++ = 'Z'; > | ~~~~~~~^~~~~ >In file included from ../io_lib/cram_structs.h:68, > from ../io_lib/cram.h:57, > from cram_decode.c:56: >../io_lib/bam.h:102:19: note: at offset [2, 3] into destination object âdataâ of size 1 > 102 | unsigned char data; /* unknown size */ > | ^~~~ >../io_lib/bam.h:102:19: note: at offset [2, 3] into destination object âdataâ of size 1 >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-cram_stats.lo `test -f 'cram_stats.c' || echo './'`cram_stats.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-cram_stats.lo cram_stats.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c cram_stats.c -DPIC -fPIC -o .libs/libstaden_read_la-cram_stats.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c cram_decode.c -o libstaden_read_la-cram_decode.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c cram_stats.c -o libstaden_read_la-cram_stats.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-cram_io.lo `test -f 'cram_io.c' || echo './'`cram_io.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-cram_io.lo cram_io.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c cram_io.c -DPIC -fPIC -o .libs/libstaden_read_la-cram_io.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-cram_index.lo `test -f 'cram_index.c' || echo './'`cram_index.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-cram_index.lo cram_index.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c cram_index.c -DPIC -fPIC -o .libs/libstaden_read_la-cram_index.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c cram_index.c -o libstaden_read_la-cram_index.o >cram_decode.c: In function âcram_to_bamâ: >cram_decode.c:3230:30: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] > 3230 | *aux++ = 'R'; *aux++ = 'G'; *aux++ = 'Z'; > | ~~~~~~~^~~~~ >In file included from ../io_lib/cram_structs.h:68, > from ../io_lib/cram.h:57, > from cram_decode.c:56: >../io_lib/bam.h:102:19: note: at offset 1 into destination object âdataâ of size 1 > 102 | unsigned char data; /* unknown size */ > | ^~~~ >../io_lib/bam.h:102:19: note: at offset 1 into destination object âdataâ of size 1 >cram_decode.c:3230:44: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] > 3230 | *aux++ = 'R'; *aux++ = 'G'; *aux++ = 'Z'; > | ~~~~~~~^~~~~ >In file included from ../io_lib/cram_structs.h:68, > from ../io_lib/cram.h:57, > from cram_decode.c:56: >../io_lib/bam.h:102:19: note: at offset [2, 3] into destination object âdataâ of size 1 > 102 | unsigned char data; /* unknown size */ > | ^~~~ >../io_lib/bam.h:102:19: note: at offset [2, 3] into destination object âdataâ of size 1 >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-zfio.lo `test -f 'zfio.c' || echo './'`zfio.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-zfio.lo zfio.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c zfio.c -DPIC -fPIC -o .libs/libstaden_read_la-zfio.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c zfio.c -o libstaden_read_la-zfio.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-dstring.lo `test -f 'dstring.c' || echo './'`dstring.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-dstring.lo dstring.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c dstring.c -DPIC -fPIC -o .libs/libstaden_read_la-dstring.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c dstring.c -o libstaden_read_la-dstring.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-string_alloc.lo `test -f 'string_alloc.c' || echo './'`string_alloc.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-string_alloc.lo string_alloc.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c string_alloc.c -DPIC -fPIC -o .libs/libstaden_read_la-string_alloc.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c string_alloc.c -o libstaden_read_la-string_alloc.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-md5.lo `test -f 'md5.c' || echo './'`md5.c >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-crc32.lo `test -f 'crc32.c' || echo './'`crc32.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-md5.lo md5.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c md5.c -DPIC -fPIC -o .libs/libstaden_read_la-md5.o > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-crc32.lo crc32.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c crc32.c -DPIC -fPIC -o .libs/libstaden_read_la-crc32.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c crc32.c -o libstaden_read_la-crc32.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-scram.lo `test -f 'scram.c' || echo './'`scram.c >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c md5.c -o libstaden_read_la-md5.o > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-scram.lo scram.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c scram.c -DPIC -fPIC -o .libs/libstaden_read_la-scram.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-thread_pool.lo `test -f 'thread_pool.c' || echo './'`thread_pool.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-thread_pool.lo thread_pool.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c thread_pool.c -DPIC -fPIC -o .libs/libstaden_read_la-thread_pool.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c cram_io.c -o libstaden_read_la-cram_io.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c scram.c -o libstaden_read_la-scram.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-binning.lo `test -f 'binning.c' || echo './'`binning.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-binning.lo binning.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c binning.c -DPIC -fPIC -o .libs/libstaden_read_la-binning.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c thread_pool.c -o libstaden_read_la-thread_pool.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c binning.c -o libstaden_read_la-binning.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-cram_bambam.lo `test -f 'cram_bambam.c' || echo './'`cram_bambam.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-cram_bambam.lo cram_bambam.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c cram_bambam.c -DPIC -fPIC -o .libs/libstaden_read_la-cram_bambam.o >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-bgzip.lo `test -f 'bgzip.c' || echo './'`bgzip.c > > > >rdlibtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c -o libstaden_read_la-bgzip.lo bgzip.c > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c bgzip.c -DPIC -fPIC -o .libs/libstaden_read_la-bgzip.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c cram_bambam.c -o libstaden_read_la-cram_bambam.o >rdlibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I../htscodecs -Wall -pipe -march=native -fno-diagnostics-color -O2 -c bgzip.c -o libstaden_read_la-bgzip.o >rdlibtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -Wall -pipe -march=native -fno-diagnostics-color -O2 -version-info 15:1:1 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libstaden-read.la -rpath /usr/lib64 libstaden_read_la-Read.lo libstaden_read_la-scf_extras.lo libstaden_read_la-translate.lo libstaden_read_la-compression.lo libstaden_read_la-ztr.lo libstaden_read_la-ztr_translate.lo libstaden_read_la-deflate_interlaced.lo libstaden_read_la-fpoint.lo libstaden_read_la-seqIOABI.lo libstaden_read_la-seqIOALF.lo libstaden_read_la-expFileIO.lo libstaden_read_la-seqIOPlain.lo libstaden_read_la-misc_scf.lo libstaden_read_la-read_scf.lo libstaden_read_la-write_scf.lo libstaden_read_la-sff.lo libstaden_read_la-srf.lo libstaden_read_la-array.lo libstaden_read_la-compress.lo libstaden_read_la-error.lo libstaden_read_la-files.lo libstaden_read_la-find.lo libstaden_read_la-mach-io.lo libstaden_read_la-open_trace_file.lo libstaden_read_la-read_alloc.lo libstaden_read_la-strings.lo libstaden_read_la-traceType.lo libstaden_read_la-xalloc.lo libstaden_read_la-vlen.lo libstaden_read_la-hash_table.lo libstaden_read_la-jenkins_lookup3.lo libstaden_read_la-mFILE.lo libstaden_read_la-pooled_alloc.lo libstaden_read_la-bam.lo libstaden_read_la-sam_header.lo libstaden_read_la-cram_codecs.lo libstaden_read_la-cram_encode.lo libstaden_read_la-cram_decode.lo libstaden_read_la-cram_stats.lo libstaden_read_la-cram_io.lo libstaden_read_la-cram_index.lo libstaden_read_la-zfio.lo libstaden_read_la-dstring.lo libstaden_read_la-string_alloc.lo libstaden_read_la-md5.lo libstaden_read_la-crc32.lo libstaden_read_la-scram.lo libstaden_read_la-thread_pool.lo libstaden_read_la-binning.lo libstaden_read_la-cram_bambam.lo libstaden_read_la-bgzip.lo -lz -lcurl ../htscodecs/htscodecs/libhtscodecs.la -lm -lpthread -llzma -lbz2 > > > >rdlibtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -Wall -pipe -march=native -fno-diagnostics-color -O2 -version-info 15:1:1 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libstaden-read.la -rpath /usr/lib64 libstaden_read_la-Read.lo libstaden_read_la-scf_extras.lo libstaden_read_la-translate.lo libstaden_read_la-compression.lo libstaden_read_la-ztr.lo libstaden_read_la-ztr_translate.lo libstaden_read_la-deflate_interlaced.lo libstaden_read_la-fpoint.lo libstaden_read_la-seqIOABI.lo libstaden_read_la-seqIOALF.lo libstaden_read_la-expFileIO.lo libstaden_read_la-seqIOPlain.lo libstaden_read_la-misc_scf.lo libstaden_read_la-read_scf.lo libstaden_read_la-write_scf.lo libstaden_read_la-sff.lo libstaden_read_la-srf.lo libstaden_read_la-array.lo libstaden_read_la-compress.lo libstaden_read_la-error.lo libstaden_read_la-files.lo libstaden_read_la-find.lo libstaden_read_la-mach-io.lo libstaden_read_la-open_trace_file.lo libstaden_read_la-read_alloc.lo libstaden_read_la-strings.lo libstaden_read_la-traceType.lo libstaden_read_la-xalloc.lo libstaden_read_la-vlen.lo libstaden_read_la-hash_table.lo libstaden_read_la-jenkins_lookup3.lo libstaden_read_la-mFILE.lo libstaden_read_la-pooled_alloc.lo libstaden_read_la-bam.lo libstaden_read_la-sam_header.lo libstaden_read_la-cram_codecs.lo libstaden_read_la-cram_encode.lo libstaden_read_la-cram_decode.lo libstaden_read_la-cram_stats.lo libstaden_read_la-cram_io.lo libstaden_read_la-cram_index.lo libstaden_read_la-zfio.lo libstaden_read_la-dstring.lo libstaden_read_la-string_alloc.lo libstaden_read_la-md5.lo libstaden_read_la-crc32.lo libstaden_read_la-scram.lo libstaden_read_la-thread_pool.lo libstaden_read_la-binning.lo libstaden_read_la-cram_bambam.lo libstaden_read_la-bgzip.lo -lz -lcurl ../htscodecs/htscodecs/libhtscodecs.la -lm -lpthread -llzma -lbz2 > >rdlibtool: lconf: {.name="libtool"}. >rdlibtool: fdcwd: {.fdcwd=AT_FDCWD, .realpath="/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib"}. >rdlibtool: lconf: fstatat(AT_FDCWD,".",...) = 0 {.st_dev = 85, .st_ino = 1406233}. >rdlibtool: lconf: openat(AT_FDCWD,"libtool",O_RDONLY,0) = -1 [ENOENT]. >rdlibtool: lconf: openat(AT_FDCWD,"../",O_DIRECTORY,0) = 5. >rdlibtool: lconf: fstat(5,...) = 0 {.st_dev = 85, .st_ino = 1406229}. >rdlibtool: lconf: openat(5,"libtool",O_RDONLY,0) = 6. >rdlibtool: lconf: found "/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/libtool". >rdlibtool: link: ln -s libstaden-read.so.def .libs/libstaden-read.so.def.linux >rdlibtool: link: ln -s libstaden-read.so.def.linux .libs/libstaden-read.so.def.host >rdlibtool: link: ar crs .libs/libstaden-read.a .libs/libstaden_read_la-Read.o .libs/libstaden_read_la-scf_extras.o .libs/libstaden_read_la-translate.o .libs/libstaden_read_la-compression.o .libs/libstaden_read_la-ztr.o .libs/libstaden_read_la-ztr_translate.o .libs/libstaden_read_la-deflate_interlaced.o .libs/libstaden_read_la-fpoint.o .libs/libstaden_read_la-seqIOABI.o .libs/libstaden_read_la-seqIOALF.o .libs/libstaden_read_la-expFileIO.o .libs/libstaden_read_la-seqIOPlain.o .libs/libstaden_read_la-misc_scf.o .libs/libstaden_read_la-read_scf.o .libs/libstaden_read_la-write_scf.o .libs/libstaden_read_la-sff.o .libs/libstaden_read_la-srf.o .libs/libstaden_read_la-array.o .libs/libstaden_read_la-compress.o .libs/libstaden_read_la-error.o .libs/libstaden_read_la-files.o .libs/libstaden_read_la-find.o .libs/libstaden_read_la-mach-io.o .libs/libstaden_read_la-open_trace_file.o .libs/libstaden_read_la-read_alloc.o .libs/libstaden_read_la-strings.o .libs/libstaden_read_la-traceType.o .libs/libstaden_read_la-xalloc.o .libs/libstaden_read_la-vlen.o .libs/libstaden_read_la-hash_table.o .libs/libstaden_read_la-jenkins_lookup3.o .libs/libstaden_read_la-mFILE.o .libs/libstaden_read_la-pooled_alloc.o .libs/libstaden_read_la-bam.o .libs/libstaden_read_la-sam_header.o .libs/libstaden_read_la-cram_codecs.o .libs/libstaden_read_la-cram_encode.o .libs/libstaden_read_la-cram_decode.o .libs/libstaden_read_la-cram_stats.o .libs/libstaden_read_la-cram_io.o .libs/libstaden_read_la-cram_index.o .libs/libstaden_read_la-zfio.o .libs/libstaden_read_la-dstring.o .libs/libstaden_read_la-string_alloc.o .libs/libstaden_read_la-md5.o .libs/libstaden_read_la-crc32.o .libs/libstaden_read_la-scram.o .libs/libstaden_read_la-thread_pool.o .libs/libstaden_read_la-binning.o .libs/libstaden_read_la-cram_bambam.o .libs/libstaden_read_la-bgzip.o >rdlibtool: link: x86_64-pc-linux-gnu-gcc .libs/libstaden_read_la-Read.o .libs/libstaden_read_la-scf_extras.o .libs/libstaden_read_la-translate.o .libs/libstaden_read_la-compression.o .libs/libstaden_read_la-ztr.o .libs/libstaden_read_la-ztr_translate.o .libs/libstaden_read_la-deflate_interlaced.o .libs/libstaden_read_la-fpoint.o .libs/libstaden_read_la-seqIOABI.o .libs/libstaden_read_la-seqIOALF.o .libs/libstaden_read_la-expFileIO.o .libs/libstaden_read_la-seqIOPlain.o .libs/libstaden_read_la-misc_scf.o .libs/libstaden_read_la-read_scf.o .libs/libstaden_read_la-write_scf.o .libs/libstaden_read_la-sff.o .libs/libstaden_read_la-srf.o .libs/libstaden_read_la-array.o .libs/libstaden_read_la-compress.o .libs/libstaden_read_la-error.o .libs/libstaden_read_la-files.o .libs/libstaden_read_la-find.o .libs/libstaden_read_la-mach-io.o .libs/libstaden_read_la-open_trace_file.o .libs/libstaden_read_la-read_alloc.o .libs/libstaden_read_la-strings.o .libs/libstaden_read_la-traceType.o .libs/libstaden_read_la-xalloc.o .libs/libstaden_read_la-vlen.o .libs/libstaden_read_la-hash_table.o .libs/libstaden_read_la-jenkins_lookup3.o .libs/libstaden_read_la-mFILE.o .libs/libstaden_read_la-pooled_alloc.o .libs/libstaden_read_la-bam.o .libs/libstaden_read_la-sam_header.o .libs/libstaden_read_la-cram_codecs.o .libs/libstaden_read_la-cram_encode.o .libs/libstaden_read_la-cram_decode.o .libs/libstaden_read_la-cram_stats.o .libs/libstaden_read_la-cram_io.o .libs/libstaden_read_la-cram_index.o .libs/libstaden_read_la-zfio.o .libs/libstaden_read_la-dstring.o .libs/libstaden_read_la-string_alloc.o .libs/libstaden_read_la-md5.o .libs/libstaden_read_la-crc32.o .libs/libstaden_read_la-scram.o .libs/libstaden_read_la-thread_pool.o .libs/libstaden_read_la-binning.o .libs/libstaden_read_la-cram_bambam.o .libs/libstaden_read_la-bgzip.o -Wl,--whole-archive ../htscodecs/htscodecs/.libs/libhtscodecs.a -Wl,--no-whole-archive -Wall -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -lz -lcurl -lz -lpthread -lbz2 -lm -lpthread -llzma -lbz2 -shared -fPIC -Wl,-soname -Wl,libstaden-read.so.14 -o .libs/libstaden-read.so.14.1.1 >/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: ../htscodecs/htscodecs/.libs/libhtscodecs.a(rANS_static4x16pr.o): warning: relocation against `rans_key' in read-only section `.text' >/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: ../htscodecs/htscodecs/.libs/libhtscodecs.a(tokenise_name3.o): relocation R_X86_64_PC32 against symbol `tok_key' can not be used when making a shared object; recompile with -fPIC >/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: final link failed: bad value >collect2: error: ld returned 1 exit status >rdlibtool: exec error upon slbt_exec_link_create_library(), line 1572: (see child process error messages). >rdlibtool: < returned to > slbt_exec_link(), line 2084. >make[2]: *** [Makefile:586: libstaden-read.la] Error 2 >make[2]: Leaving directory '/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14/io_lib' >make[1]: *** [Makefile:757: all-recursive] Error 1 >make[1]: Leaving directory '/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14' >make: *** [Makefile:502: all] Error 2 > * ERROR: sci-libs/io_lib-1.14.14::gentoo failed (compile phase): > * emake failed > * > * If you need support, post the output of `emerge --info '=sci-libs/io_lib-1.14.14::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-libs/io_lib-1.14.14::gentoo'`. > * The complete build log is located at '/var/log/portage/sci-libs:io_lib-1.14.14:20210704-225759.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-libs/io_lib-1.14.14/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-libs/io_lib-1.14.14/temp/environment'. > * Working directory: '/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14' > * S: '/var/tmp/portage/sci-libs/io_lib-1.14.14/work/io_lib-1.14.14' >
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