* Package: sys-cluster/gasnet-1.30.0 * Repository: gentoo * Maintainer: cluster@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux mpi threads userland_GNU * FEATURES: fakeroot network-sandbox preserve-libs sandbox splitdebug userpriv usersandbox Auto packing the repository in background for optimum performance. See "git help gc" for manual housekeeping. [master 082d52a8] saving uncommitted changes in /etc prior to emerge run Author: Alessandro-Barbieri 2 files changed, 13 insertions(+), 8 deletions(-) create mode 120000 systemd/system/cron-weekly-mdadm.timer * /etc/portage/package.cflags/cflags -> */*: NOFFLAGS=1 * /etc/portage/package.cflags/cflags -> */*: LDFLAGS-="-Wl,-z,now -Wl,-z,relro" * /etc/portage/package.cflags/cflags -> */*: USE_NONGNU="" +fPIE +fstack-protector-all +D_FORTIFY_SOURCE=2 * /etc/portage/package.cflags/cflags -> */*: NOLDADD=1 * FEATURES='assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg candy cgroup clean-logs config-protect-if-modified distlocks ebuild-locks fakeroot fixlafiles ipc-sandbox merge-sync metadata-transfer mount-sandbox multilib-strict network-sandbox news parallel-fetch parallel-install pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-elog split-log splitdebug strict strict-keepdir unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr' * CFLAGS='-Os -pipe -march=native -fdiagnostics-color=always -fexceptions -Wformat -fstack-clash-protection -Wimplicit-function-declaration -Wno-error=implicit-function-declaration' * CXXFLAGS='-Os -pipe -march=native -fdiagnostics-color=always -fexceptions -Wformat -fstack-clash-protection' * CPPFLAGS='-D_GLIBCXX_ASSERTIONS' * FFLAGS='-Os -pipe -march=native -fdiagnostics-color=always' * FCFLAGS='-Os -pipe -march=native -fdiagnostics-color=always' * F77FLAGS='-Os -pipe -march=native -fdiagnostics-color=always' * LDFLAGS='-Wl,-O1 -Wl,--as-needed -Wl,--sort-common' * MAKEOPTS='-j12 -l15' * gcc (Gentoo Hardened 10.3.0 p1) 10.3.0 * g++ (Gentoo Hardened 10.3.0 p1) 10.3.0 * LLD 12.0.0 (compatible with GNU linkers) * Linux ALESSAND-F1E8 5.10.4-rt-rt22-x86_64 #3 SMP PREEMPT_RT Sun Apr 18 16:12:36 CEST 2021 x86_64 AMD Ryzen 5 3600 6-Core Processor AuthenticAMD GNU/Linux 0;emerge 00:32:52 1|2 gasnet (root@ALESSAND-F1E8) >>> Unpacking source... >>> Unpacking GASNet-1.30.0.tar.gz to /var/tmp/portage/sys-cluster/gasnet-1.30.0/work >>> Source unpacked in /var/tmp/portage/sys-cluster/gasnet-1.30.0/work >>> Preparing source in /var/tmp/portage/sys-cluster/gasnet-1.30.0/work/GASNet-1.30.0 ... * Running eautoreconf in '/var/tmp/portage/sys-cluster/gasnet-1.30.0/work/GASNet-1.30.0' ... * Running 'aclocal -I other/plpa/config' ... [ ok ] * This package has a configure.in file which has long been deprecated. Please * update it to use configure.ac instead as newer versions of autotools will die * when it finds this file. See https://bugs.gentoo.org/426262 for details. * Running 'autoconf --force' ... [ ok ] * Running 'autoheader' ... [ ok ] * Running 'automake --add-missing --copy --foreign --force-missing' ... [ ok ] * Running elibtoolize in: GASNet-1.30.0/ >>> Source prepared. >>> Configuring source in /var/tmp/portage/sys-cluster/gasnet-1.30.0/work/GASNet-1.30.0 ... * econf: updating GASNet-1.30.0/config.sub with /usr/share/gnuconfig/config.sub * econf: updating GASNet-1.30.0/config.guess with /usr/share/gnuconfig/config.guess * econf: updating GASNet-1.30.0/config-aux/config.sub with /usr/share/gnuconfig/config.sub * econf: updating GASNet-1.30.0/config-aux/config.guess with /usr/share/gnuconfig/config.guess ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --docdir=/usr/share/doc/gasnet-1.30.0 --libdir=/usr/lib64 --disable-ibv --enable-mpi --enable-pthreads CC=x86_64-pc-linux-gnu-gcc -Os -pipe -march=native -fdiagnostics-color=always -fexceptions -Wformat -fstack-clash-protection -Wimplicit-function-declaration -Wno-error=implicit-function-declaration -fPIC MPI_CC=mpicc -Os -pipe -march=native -fdiagnostics-color=always -fexceptions -Wformat -fstack-clash-protection -Wimplicit-function-declaration -Wno-error=implicit-function-declaration -fPIC CXX=x86_64-pc-linux-gnu-g++ -Os -pipe -march=native -fdiagnostics-color=always -fexceptions -Wformat -fstack-clash-protection -fPIC checking for good shell... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/lib/portage/pypy3/ebuild-helpers/xattr/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/remake sets $(MAKE)... yes checking whether /usr/bin/remake supports nested variables... yes checking for package version... GASNet 1.30.0 http://gasnet.lbl.gov checking for configure arguments... configure args: '--prefix=/usr' '--build=x86_64-pc-linux-gnu' '--host=x86_64-pc-linux-gnu' '--mandir=/usr/share/man' '--infodir=/usr/share/info' '--datadir=/usr/share' '--sysconfdir=/etc' '--localstatedir=/var/lib' '--docdir=/usr/share/doc/gasnet-1.30.0' '--libdir=/usr/lib64' '--disable-ibv' '--enable-mpi' '--enable-pthreads' 'CC=x86_64-pc-linux-gnu-gcc -Os -pipe -march=native -fdiagnostics-color=always -fexceptions -Wformat -fstack-clash-protection -Wimplicit-function-declaration -Wno-error=implicit-function-declaration -fPIC' 'MPI_CC=mpicc -Os -pipe -march=native -fdiagnostics-color=always -fexceptions -Wformat -fstack-clash-protection -Wimplicit-function-declaration -Wno-error=implicit-function-declaration -fPIC' 'CXX=x86_64-pc-linux-gnu-g++ -Os -pipe -march=native -fdiagnostics-color=always -fexceptions -Wformat -fstack-clash-protection -fPIC' checking if user enabled cross-compile... no checking for cached autoconf environment settings... checking for CC setting... 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(cached) 10.3.0 checking for C compiler flag -Wno-unused... yes checking for C compiler flag -Wunused... yes checking for C compiler flag -Wno-unused-parameter... yes checking for C compiler flag -Wunused-parameter... yes checking for C compiler flag -Wno-address... yes checking for C compiler flag -Waddress... yes checking for buggy pthread.h mutex initializers... ok checking for C compiler flag ... yes checking for flags required for C99 subset compliance... none required checking for MPI_CFLAGS setting... (default) "-O3 --param max-inline-insns-single=35000 --param inline-unit-growth=10000 --param large-function-growth=200000 -Winline" checking for C compiler flag -O3 --param max-inline-insns-single=35000 --param inline-unit-growth=10000 --param large-function-growth=200000 -Winline... yes checking for mpirun... /usr/bin/mpirun checking for full path expansion of MPIRUN_CMD... /usr/bin/mpirun -np %N %C checking building MPI helper object... ok checking for working MPI configuration... yes checking MPI_CC for __restrict__ keyword... yes checking MPI_CC for restrict qualifying typedefs... yes checking MPI_CC for 32-bit __sync atomics support... yes checking MPI_CC for 64-bit __sync atomics support... yes checking MPI_CC for inline modifier... yes checking MPI_CC for working 'static inline'... yes checking MPI_CC for __attribute__((__always_inline__))... no/warning checking MPI_CC for __attribute__((__noinline__))... yes checking MPI_CC for __attribute__((__malloc__))... yes checking MPI_CC for __attribute__((__warn_unused_result__))... yes checking MPI_CC for __attribute__((__used__))... yes checking MPI_CC for __attribute__((__unused__))... yes checking MPI_CC for __attribute__((__may_alias__))... yes checking MPI_CC for __attribute__((__noreturn__))... yes checking MPI_CC for __attribute__((__const__))... yes checking MPI_CC for __attribute__((__pure__))... yes checking MPI_CC for __attribute__((__hot__))... yes checking MPI_CC for __attribute__((__cold__))... yes checking MPI_CC for __attribute__((__deprecated__))... yes checking MPI_CC for __attribute__((__format__))... yes checking MPI_CC for __attribute__((__format__)) on function pointers... yes checking MPI_CC for __attribute__((__format__)) on function pointers as arguments... yes checking MPI_CC for __attribute__((__unused__)) on typedefs... yes checking MPI_CC for pragma GCC diagnostic push/pop/ignored... yes checking MPI_CC for value of MPI_VERSION... 3 checking for working GASNet-required ISO C99 subset in MPI_CC... yes checking for MPI_Init_thread... yes checking for MPI_Query_thread... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for socketpair() support... yes checking for O_ASYNC support... yes checking for mxm_dump_config... no checking for MXM_HOME setting... (default) "/usr" checking if /usr is the MXM drivers install prefix... probably not - missing include/mxm/api/mxm_api.h checking for MXM_CFLAGS setting... (default) "" checking for MXM_LIBS setting... (default) "-lmxm" checking for MXM_LDFLAGS setting... (default) "" checking for working MXM configuration... no checking for PSM_HOME setting... (default) "/usr" checking if /usr is the Omni-Path PSM2 drivers install prefix... probably not - missing include/psm2.h checking for PSM_CFLAGS setting... (default) "" checking for PSM_LIBS setting... (default) "-lpsm2" checking for PSM_LDFLAGS setting... (default) "" checking for working PSM configuration... no checking for yod... no checking for PORTALS4_HOME setting... (default) "/usr" checking if /usr is the Portals4 library install prefix... probably not - missing include/portals4.h checking for PORTALS4_CFLAGS setting... (default) "" checking for PORTALS4_LIBS setting... (default) "-lportals" checking for PORTALS4_LDFLAGS setting... (default) "" checking for working Portals4 configuration... no checking for PMI support in Portals4 runtime library... no checking for SHMEM network type... unknown checking for PAMI_HOME setting... (default) "/usr" checking for PAMI_CFLAGS setting... (default) "" checking for PAMI_LDFLAGS setting... (default) "" checking for PAMI_LIBS setting... (default) "-lpami" checking for working PAMI configuration... no checking for fi_info... /usr/bin/fi_info checking for OFI_HOME setting... (default) "/usr" checking if /usr is the OFI libfabric install prefix... yes checking for OFI_CFLAGS setting... (default) "" checking for OFI_LIBS setting... (default) "-lfabric" checking for OFI_LDFLAGS setting... (default) "" checking for working OFI GASNet bindings... yes * ACCESS DENIED: open_wr: /dev/kfd * ACCESS DENIED: open_wr: /dev/kfd * ACCESS DENIED: open_wr: /dev/kfd configure: WARNING: The sockets OFI provider was detected on your system and the ofi-conduit has been configured for that provider. If that is not your desired provider, override this by using the --with-ofi-provider= configure flag. See the ofi-conduit README for details. checking for sys/socket.h... (cached) yes checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking for socklen_t or its equivalent... socklen_t checking for setpgid... yes checking for setpgrp... yes checking whether setpgrp takes no argument... yes checking for PMI_HOME setting... (default) "/usr" checking for PMI_LDFLAGS setting... (default) "" checking for PMI_LIBS setting... (default) "probe" checking for library containing PMI2_Init... no checking for library containing PMI_Init... no checking for PMI spawner support... no checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for on_exit... yes checking for gethostid... yes checking for setenv... yes checking for unsetenv... yes checking for putenv... yes checking for getrlimit... yes checking for setrlimit... yes checking for getrlimit64... yes checking for setrlimit64... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/table.h usability... no checking sys/table.h presence... no checking for sys/table.h... no checking features.h usability... yes checking features.h presence... yes checking for features.h... yes checking for fopen64... yes checking for sigprocmask... yes checking sn/mmtimer.h usability... no checking sn/mmtimer.h presence... no checking for sn/mmtimer.h... no checking linux/mmtimer.h usability... yes checking linux/mmtimer.h presence... yes checking for linux/mmtimer.h... yes checking for srand_deterministic... no checking for declaration/definition of setenv... yes checking for declaration/definition of unsetenv... yes checking for declaration/definition of snprintf... yes checking for declaration/definition of vsnprintf... yes checking for isblank... yes checking for isascii... yes checking for toascii... yes checking for declaration/definition of isblank... yes checking for declaration/definition of isascii... yes checking for declaration/definition of toascii... yes checking for buggy ctype.h... ok checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking for backtrace... yes checking for backtrace_symbols... yes checking for addr2line... /usr/bin/addr2line checking for gdb... /usr/bin/gdb checking for gstack... no checking for pstack... no checking for pgdbg... no checking for idb... no checking for idb-e... no checking for ladebug... no checking for dbx... no checking for lldb... /usr/bin/lldb checking ucontext.h usability... yes checking ucontext.h presence... yes checking for ucontext.h... yes checking for printstack... no checking for usleep()... yes checking for library containing usleep... none required checking for nanosleep()... yes checking for library containing nanosleep... none required checking for clock_nanosleep()... yes checking for library containing clock_nanosleep... none required checking for nsleep()... yes checking for library containing nsleep... no entry point not found - disabled checking for sched_yield()... yes checking for library containing sched_yield... none required checking for syscall... yes checking syscall.h usability... yes checking syscall.h presence... yes checking for syscall.h... yes checking for unistd.h... (cached) yes checking for __NR_sched_setaffinity... yes checking for __NR_sched_getaffinity... yes checking for PLPA building mode... standalone checking for PLPA symbol prefix... gasneti_plpa_ checking whether to use PLPA for cpu binding... yes checking for working mmap()... yes checking for MAP_NORESERVE... yes checking for MAP_ANONYMOUS... yes checking for MAP_ANON... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for ptmalloc... yes checking for glibc... 2.32 checking for __builtin_expect... yes checking for __builtin_constant_p... yes checking for __builtin_prefetch... yes checking for __func__... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for llvm-nm... /usr/lib/llvm/12/bin/llvm-nm checking for GNU nm... no checking for archiver... llvm-ar checking for ranlib... llvm-ranlib checking for basename... /usr/bin/basename checking for dirname... /usr/bin/dirname checking for readlink... /usr/bin/readlink checking for time... no checking for env... /usr/bin/env checking for fca_config... no checking for FCA_HOME setting... (default) "/usr" checking if /usr is the FCA drivers install prefix... probably not - missing include/fca/fca_api.h checking for working FCA configuration... no configure: not updating unwritable cache config.cache checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating other/perlstart config.status: creating config-aux/Makefile config.status: creating other/Makefile config.status: creating other/Makefile-libgasnet.mak config.status: creating other/gasnet_tools-fragment.mak config.status: creating tests/Makefile config.status: creating Makefile config.status: creating other/mpirun_common config.status: creating other/fragment-head.mak config.status: creating other/fragment-body.mak config.status: creating other/Makefile-conduit.mak config.status: creating other/ammpi/Makefile config.status: creating other/amudp/Makefile config.status: creating other/contrib/Makefile config.status: creating other/contrib/gasnet_trace config.status: creating other/firehose/Makefile config.status: creating other/firehose/firehose.mak config.status: creating other/fca/Makefile config.status: creating other/fca/fca.mak config.status: creating other/blcr/Makefile config.status: creating other/blcr/blcr.mak config.status: creating mpi-conduit/Makefile config.status: creating mpi-conduit/conduit.mak config.status: creating mpi-conduit/contrib/Makefile config.status: creating mpi-conduit/contrib/gasnetrun_mpi config.status: creating udp-conduit/Makefile config.status: creating udp-conduit/conduit.mak config.status: creating smp-conduit/Makefile config.status: creating smp-conduit/conduit.mak config.status: creating pami-conduit/Makefile config.status: creating pami-conduit/conduit.mak config.status: creating pami-conduit/contrib/Makefile config.status: creating pami-conduit/contrib/gasnetrun_pami config.status: creating ibv-conduit/Makefile config.status: creating ibv-conduit/conduit.mak config.status: creating ibv-conduit/contrib/Makefile config.status: creating ibv-conduit/contrib/gasnetrun_ibv config.status: creating mxm-conduit/Makefile config.status: creating mxm-conduit/conduit.mak config.status: creating mxm-conduit/contrib/Makefile config.status: creating mxm-conduit/contrib/gasnetrun_mxm config.status: creating psm-conduit/Makefile config.status: creating psm-conduit/conduit.mak config.status: creating psm-conduit/contrib/Makefile config.status: creating psm-conduit/contrib/gasnetrun_psm config.status: creating shmem-conduit/Makefile config.status: creating shmem-conduit/conduit.mak config.status: creating portals4-conduit/Makefile config.status: creating portals4-conduit/conduit.mak config.status: creating gemini-conduit/Makefile config.status: creating gemini-conduit/conduit.mak config.status: creating gemini-conduit/contrib/Makefile config.status: creating gemini-conduit/contrib/gasnetrun_gemini config.status: creating aries-conduit/Makefile config.status: creating aries-conduit/conduit.mak config.status: creating aries-conduit/contrib/Makefile config.status: creating aries-conduit/contrib/gasnetrun_aries config.status: creating ofi-conduit/Makefile config.status: creating ofi-conduit/conduit.mak config.status: creating ofi-conduit/contrib/Makefile config.status: creating ofi-conduit/contrib/gasnetrun_ofi config.status: creating gasnet_config.h config.status: executing depfiles commands config.status: executing default commands -------------------------------------------------------------------- configure warning summary: configure cache_file setting got lost - you may need to run a fresh ./Bootstrap The sockets OFI provider was detected on your system and the ofi-conduit has been configured for that provider. If that is not your desired provider, override this by using the --with-ofi-provider= configure flag. See the ofi-conduit README for details. ---------------------------------------------------------------------- GASNet configuration: Portable conduits: ----------------- Portable SMP-loopback conduit (smp) ON (auto) Portable OpenFabrics Interfaces conduit (ofi) ON (auto) Portable Portals4 conduit (portals4) OFF (not found) Portable UDP/IP conduit (udp) ON (auto) Portable MPI conduit (mpi) ON (enabled) Native, high-performance conduits: --------------------------------- IBM BlueGene/Q / Power775 PAMI conduit (pami) OFF (not found) InfiniBand IB Verbs conduit (ibv) OFF (disabled) Mellanox InfiniBand MXM conduit (mxm) OFF (not found) Intel OmniPath PSM2 conduit (psm) OFF (not found) Cray XE/XK Gemini conduit (gemini) OFF (not found) Cray XC Aries conduit (aries) OFF (not found) SGI Altix / Cray X1 Shmem conduit (shmem) OFF (not found) Some conduits require --enable-XXX configure flags and/or additional variables providing the install location of vendor drivers. See the GASNet documentation for details. Misc Settings ------------- MPI compatibility: yes Pthreads support: yes Segment config: fast PSHM support: posix FCA support: no BLCR support: no ---------------------------------------------------------------------- >>> Source configured. * --------------------------- ACCESS VIOLATION SUMMARY --------------------------- * LOG FILE: "/var/tmp/portage/sys-cluster/gasnet-1.30.0/temp/sandbox.log" * VERSION 1.0 FORMAT: F - Function called FORMAT: S - Access Status FORMAT: P - Path as passed to function FORMAT: A - Absolute Path (not canonical) FORMAT: R - Canonical Path FORMAT: C - Command Line F: open_wr S: deny P: /dev/kfd A: /dev/kfd R: /dev/kfd C: fi_info --provider=psm2 F: open_wr S: deny P: /dev/kfd A: /dev/kfd R: /dev/kfd C: fi_info --provider=gni F: open_wr S: deny P: /dev/kfd A: /dev/kfd R: /dev/kfd C: fi_info --provider=sockets * --------------------------------------------------------------------------------