* Package: dev-python/mpi4py-3.0.3 * Repository: gentoo * Maintainer: python@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux python_targets_python3_9 userland_GNU * FEATURES: network-sandbox preserve-libs sandbox splitdebug userpriv usersandbox >>> Unpacking source... >>> Unpacking mpi4py-3.0.3.tar.gz to /var/tmp/portage/dev-python/mpi4py-3.0.3/work >>> Source unpacked in /var/tmp/portage/dev-python/mpi4py-3.0.3/work >>> Preparing source in /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3 ... removed 'docs/source/usrman/index.rst' removed 'docs/source/usrman/make.bat' removed 'docs/source/usrman/intro.rst' removed 'docs/source/usrman/abstract.txt' removed 'docs/source/usrman/conf.py' removed 'docs/source/usrman/mpi4py.run.rst' removed 'docs/source/usrman/manual.rst' removed 'docs/source/usrman/tutorial.rst' removed 'docs/source/usrman/overview.rst' removed 'docs/source/usrman/install.rst' removed 'docs/source/usrman/appendix.rst' removed 'docs/source/usrman/toctree.txt' removed 'docs/source/usrman/mpi4py.futures.rst' removed 'docs/source/usrman/Makefile' removed 'docs/source/usrman/citing.rst' removed directory 'docs/source/usrman' removed directory 'docs/source' * Applying mpi4py-3.0.3-py38setup.patch ... [ ok ] * Applying mpi4py-3.0.3-py38futures.patch ... [ ok ] * Will copy sources from /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3 * python3_9: copying to /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9 >>> Source prepared. >>> Configuring source in /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3 ... >>> Source configured. >>> Compiling source in /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3 ... * python3_9: running distutils-r1_run_phase distutils-r1_python_compile python3.9 setup.py build -j 3 running build running build_src running build_py creating /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py copying src/mpi4py/__init__.py -> /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py copying src/mpi4py/bench.py -> /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py copying src/mpi4py/__main__.py -> /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py copying src/mpi4py/run.py -> /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py creating /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py/futures copying src/mpi4py/futures/_base.py -> /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py/futures copying src/mpi4py/futures/__init__.py -> /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py/futures copying src/mpi4py/futures/aplus.py -> /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py/futures copying src/mpi4py/futures/_lib.py -> /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py/futures copying src/mpi4py/futures/pool.py -> /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py/futures copying src/mpi4py/futures/server.py -> /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py/futures copying src/mpi4py/futures/__main__.py -> /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py/futures copying src/mpi4py/libmpi.pxd -> /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py copying src/mpi4py/__init__.pxd -> /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py copying src/mpi4py/MPI.pxd -> /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py creating /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py/include creating /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.h -> /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.i -> /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi.pxi -> /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py/include/mpi4py warning: build_py: byte-compiling is disabled, skipping. running build_clib MPI configuration: [mpi] from 'mpi.cfg' MPI C compiler: /usr/bin/mpicc MPI C++ compiler: /usr/bin/mpicxx MPI F compiler: /usr/bin/mpifort MPI F90 compiler: /usr/bin/mpif90 MPI F77 compiler: /usr/bin/mpif77 checking for library 'lmpe' ... /usr/bin/mpicc -pipe -march=native -fno-diagnostics-color -O2 -fPIC -c _configtest.c -o _configtest.o /usr/bin/mpicc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pipe -march=native -fno-diagnostics-color -O2 _configtest.o -llmpe -o _configtest /usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -llmpe collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o building 'mpe' dylib library creating /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/temp.linux-x86_64-3.9 creating /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/temp.linux-x86_64-3.9/src creating /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/temp.linux-x86_64-3.9/src/lib-pmpi /usr/bin/mpicc -pipe -march=native -fno-diagnostics-color -O2 -fPIC -c src/lib-pmpi/mpe.c -o /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/temp.linux-x86_64-3.9/src/lib-pmpi/mpe.o creating /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py/lib-pmpi /usr/bin/mpicc -shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pipe -march=native -fno-diagnostics-color -O2 -Wl,--no-as-needed /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/temp.linux-x86_64-3.9/src/lib-pmpi/mpe.o -o /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py/lib-pmpi/libmpe.so checking for library 'vt-mpi' ... /usr/bin/mpicc -pipe -march=native -fno-diagnostics-color -O2 -fPIC -c _configtest.c -o _configtest.o /usr/bin/mpicc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pipe -march=native -fno-diagnostics-color -O2 _configtest.o -lvt-mpi -o _configtest /usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lvt-mpi collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o checking for library 'vt.mpi' ... /usr/bin/mpicc -pipe -march=native -fno-diagnostics-color -O2 -fPIC -c _configtest.c -o _configtest.o /usr/bin/mpicc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pipe -march=native -fno-diagnostics-color -O2 _configtest.o -lvt.mpi -o _configtest /usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lvt.mpi collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o building 'vt' dylib library /usr/bin/mpicc -pipe -march=native -fno-diagnostics-color -O2 -fPIC -c src/lib-pmpi/vt.c -o /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/temp.linux-x86_64-3.9/src/lib-pmpi/vt.o /usr/bin/mpicc -shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pipe -march=native -fno-diagnostics-color -O2 -Wl,--no-as-needed /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/temp.linux-x86_64-3.9/src/lib-pmpi/vt.o -o /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py/lib-pmpi/libvt.so checking for library 'vt-mpi' ... /usr/bin/mpicc -pipe -march=native -fno-diagnostics-color -O2 -fPIC -c _configtest.c -o _configtest.o /usr/bin/mpicc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pipe -march=native -fno-diagnostics-color -O2 _configtest.o -lvt-mpi -o _configtest /usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lvt-mpi collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o checking for library 'vt.mpi' ... /usr/bin/mpicc -pipe -march=native -fno-diagnostics-color -O2 -fPIC -c _configtest.c -o _configtest.o /usr/bin/mpicc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pipe -march=native -fno-diagnostics-color -O2 _configtest.o -lvt.mpi -o _configtest /usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lvt.mpi collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o building 'vt-mpi' dylib library /usr/bin/mpicc -pipe -march=native -fno-diagnostics-color -O2 -fPIC -c src/lib-pmpi/vt-mpi.c -o /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/temp.linux-x86_64-3.9/src/lib-pmpi/vt-mpi.o /usr/bin/mpicc -shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pipe -march=native -fno-diagnostics-color -O2 -Wl,--no-as-needed /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/temp.linux-x86_64-3.9/src/lib-pmpi/vt-mpi.o -o /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py/lib-pmpi/libvt-mpi.so checking for library 'vt-hyb' ... /usr/bin/mpicc -pipe -march=native -fno-diagnostics-color -O2 -fPIC -c _configtest.c -o _configtest.o /usr/bin/mpicc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pipe -march=native -fno-diagnostics-color -O2 _configtest.o -lvt-hyb -o _configtest /usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lvt-hyb collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o checking for library 'vt.ompi' ... /usr/bin/mpicc -pipe -march=native -fno-diagnostics-color -O2 -fPIC -c _configtest.c -o _configtest.o /usr/bin/mpicc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pipe -march=native -fno-diagnostics-color -O2 _configtest.o -lvt.ompi -o _configtest /usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lvt.ompi collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o building 'vt-hyb' dylib library /usr/bin/mpicc -pipe -march=native -fno-diagnostics-color -O2 -fPIC -c src/lib-pmpi/vt-hyb.c -o /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/temp.linux-x86_64-3.9/src/lib-pmpi/vt-hyb.o /usr/bin/mpicc -shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pipe -march=native -fno-diagnostics-color -O2 -Wl,--no-as-needed /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/temp.linux-x86_64-3.9/src/lib-pmpi/vt-hyb.o -o /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py/lib-pmpi/libvt-hyb.so running build_ext MPI configuration: [mpi] from 'mpi.cfg' MPI C compiler: /usr/bin/mpicc MPI C++ compiler: /usr/bin/mpicxx MPI F compiler: /usr/bin/mpifort MPI F90 compiler: /usr/bin/mpif90 MPI F77 compiler: /usr/bin/mpif77 checking for dlopen() availability ... checking for header 'dlfcn.h' ... x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -fPIC -I/usr/include/python3.9 -c _configtest.c -o _configtest.o success! removing: _configtest.c _configtest.o success! checking for library 'dl' ... x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -fPIC -I/usr/include/python3.9 -c _configtest.c -o _configtest.o x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pipe -march=native -fno-diagnostics-color -O2 _configtest.o -L/var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/temp.linux-x86_64-3.9 -ldl -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for function 'dlopen' ... x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -fPIC -I/usr/include/python3.9 -c _configtest.c -o _configtest.o x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pipe -march=native -fno-diagnostics-color -O2 _configtest.o -L/var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/temp.linux-x86_64-3.9 -ldl -o _configtest success! removing: _configtest.c _configtest.o _configtest building 'mpi4py.dl' extension x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/usr/include/python3.9 -c src/dynload.c -o /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/temp.linux-x86_64-3.9/src/dynload.o x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pipe -march=native -fno-diagnostics-color -O2 /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/temp.linux-x86_64-3.9/src/dynload.o -L/var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/temp.linux-x86_64-3.9 -ldl -o /var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/lib/mpi4py/dl.cpython-39-x86_64-linux-gnu.so checking for MPI compile and link ... /usr/bin/mpicc -pipe -march=native -fno-diagnostics-color -O2 -fPIC -I/usr/include/python3.9 -c _configtest.c -o _configtest.o success! removing: _configtest.c _configtest.o /usr/bin/mpicc -pipe -march=native -fno-diagnostics-color -O2 -fPIC -I/usr/include/python3.9 -c _configtest.c -o _configtest.o /usr/bin/mpicc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pipe -march=native -fno-diagnostics-color -O2 _configtest.o -L/var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9/build/temp.linux-x86_64-3.9 -o _configtest /usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libmpi.so: undefined reference to `MPIR_being_debugged' /usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libmpi.so: undefined reference to `orte_data_server_uri' collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o error: Cannot link MPI programs. Check your configuration!!! * ERROR: dev-python/mpi4py-3.0.3::gentoo failed (compile phase): * (no error message) * * Call stack: * ebuild.sh, line 127: Called src_compile * environment, line 2830: Called distutils-r1_src_compile * environment, line 1184: Called _distutils-r1_run_foreach_impl 'distutils-r1_python_compile' * environment, line 471: Called python_foreach_impl 'distutils-r1_run_phase' 'distutils-r1_python_compile' * environment, line 2506: Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile' * environment, line 2038: Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile' * environment, line 2036: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'distutils-r1_python_compile' * environment, line 793: Called distutils-r1_run_phase 'distutils-r1_python_compile' * environment, line 1175: Called distutils-r1_python_compile * environment, line 1036: Called esetup.py 'build' '-j' '3' * environment, line 1573: Called die * The specific snippet of code: * "${@}" || die -n; * * If you need support, post the output of `emerge --info '=dev-python/mpi4py-3.0.3::gentoo'`, * the complete build log and the output of `emerge -pqv '=dev-python/mpi4py-3.0.3::gentoo'`. * The complete build log is located at '/var/log/portage/dev-python:mpi4py-3.0.3:20210612-062326.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/dev-python/mpi4py-3.0.3/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/dev-python/mpi4py-3.0.3/temp/environment'. * Working directory: '/var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3-python3_9' * S: '/var/tmp/portage/dev-python/mpi4py-3.0.3/work/mpi4py-3.0.3'