build.log

build.log (text/plain), 420.43 KB, created by David Kredba on 2021-05-17 06:51:02 UTC

[32;01m * [39;49;00mPackage:    sci-chemistry/pymol-2.5.0
[32;01m * [39;49;00mRepository: gentoo
[32;01m * [39;49;00mMaintainer: [e-mail]
[32;01m * [39;49;00mUSE:        abi_x86_64 amd64 elibc_glibc kernel_linux netcdf python_targets_python3_8 userland_GNU
[32;01m * [39;49;00mFEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking pymol-1.8.4.0.png.xz to /var/tmp/portage/sci-chemistry/pymol-2.5.0/work
>>> Unpacking pymol-2.5.0.tar.gz to /var/tmp/portage/sci-chemistry/pymol-2.5.0/work
>>> Source unpacked in /var/tmp/portage/sci-chemistry/pymol-2.5.0/work
>>> Preparing source in /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0 ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0 ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0 ...
 [32;01m*[0m python3_8: running distutils-r1_run_phase distutils-r1_python_compile
python3.8 setup.py build -j 16
fatal: not a git repository (or any parent up to mount point /var/tmp)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
running build
running build_py
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol2
copying modules/pymol2/cmd2.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol2
copying modules/pymol2/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol2
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/xwin.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/xray.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/wizarding.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/viewing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/vfont.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/util.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/shortcut_manager.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/shortcut_dict.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/shortcut.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/setting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/seqalign.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/selector.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/selecting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/save_shortcut.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/rpc.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/querying.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/pymolhttpd.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/preset.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/povray.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/parsing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/parser.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/mpeg_encode.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/moving.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/movie.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/morphing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/monitoring.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/menu.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/locking.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/lazyio.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/keywords.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/keyboard.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/invocation.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/internal.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/importing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/helping.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/headering.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/gui.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/fitting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/feedingback.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/externing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/exporting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/experimenting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/editor.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/editing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/diagnosing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/creating.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/controlling.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/constants_palette.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/constants.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/computing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/completing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/commanding.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/colorramping.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/colorprinting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/cmd.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/checking.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/cgo.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/callback.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/api.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/_gui.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/__main__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/toggle.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/stereodemo.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/security.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/sculpting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/renaming.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/pseudoatom.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/pair_fit.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/openvr.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/nucmutagenesis.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/mutagenesis.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/message.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/measurement.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/label.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/filter.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/dragging.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/distance.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/density.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/demo.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/command.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/cleanup.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/charge.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/box.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/benchmark.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/appearance.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/annotation.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/stereochemistry
copying modules/pymol/stereochemistry/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/stereochemistry
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins
copying modules/pymol/plugins/repository.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins
copying modules/pymol/plugins/managergui_qt.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins
copying modules/pymol/plugins/managergui.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins
copying modules/pymol/plugins/legacysupport.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins
copying modules/pymol/plugins/installation.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins
copying modules/pymol/plugins/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/Qt
copying modules/pymol/Qt/utils.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/Qt
copying modules/pymol/Qt/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/Qt
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk
copying modules/pmg_tk/volume.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk
copying modules/pmg_tk/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk
copying modules/pmg_tk/TextEditor.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk
copying modules/pmg_tk/Setting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk
copying modules/pmg_tk/SetEditor.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk
copying modules/pmg_tk/PyMOLMapLoad.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk
copying modules/pmg_tk/PMGApp.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk
copying modules/pmg_tk/Demo.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk
copying modules/pmg_tk/ColorEditor.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/startup
copying modules/pmg_tk/startup/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/startup
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins
copying modules/pmg_tk/skins/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/builder.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/ModalWindow.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins/normal
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins/demo
copying modules/pmg_tk/skins/demo/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins/demo
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/volume.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/shortcut_menu_gui.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/pymol_qt_gui.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/pymol_gl_widget.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/properties_dialog.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/mimic_tk.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/mimic_pmg_tk.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/keymapping.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/file_dialogs.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/builder.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/advanced_settings_gui.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/TextEditor.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/syntax
copying modules/pmg_qt/syntax/python.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/syntax
copying modules/pmg_qt/syntax/pmlparser.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/syntax
copying modules/pmg_qt/syntax/pml.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/syntax
copying modules/pmg_qt/syntax/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/syntax
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/xyz.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/water_residues.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/water_amber.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/solvate.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/sdf.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/protein_residues.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/protein_mmff.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/protein_amber99.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/protein_amber.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/protein.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/place.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/pkl.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/pdb.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/neighbor.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/mol2.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/mol.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/models.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/mmd.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/mass.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/map.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/mae.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/lst.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/io.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/hetatm.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/gms.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/gamess1.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/dictdb.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/cpv.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/cif.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/charge.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/cc1.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/brick.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/bonds.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/bond_mmff.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/bond_amber.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/arc.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/tinker
copying modules/chempy/tinker/state.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/tinker
copying modules/chempy/tinker/realtime.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/tinker
copying modules/chempy/tinker/keyword.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/tinker
copying modules/chempy/tinker/amber.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/tinker
copying modules/chempy/tinker/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/tinker
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/mmtf
copying modules/chempy/mmtf/io.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/mmtf
copying modules/chempy/mmtf/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/mmtf
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/fragments
copying modules/chempy/fragments/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/fragments
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/fast
copying modules/chempy/fast/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/fast
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/champ
copying modules/chempy/champ/formal_charges.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/champ
copying modules/chempy/champ/assign.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/champ
copying modules/chempy/champ/amber99.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/champ
copying modules/chempy/champ/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/champ
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bmin
copying modules/chempy/bmin/util.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bmin
copying modules/chempy/bmin/state.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bmin
copying modules/chempy/bmin/realtime.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bmin
copying modules/chempy/bmin/commands.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bmin
copying modules/chempy/bmin/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bmin
copying modules/pmg_qt/forms/shortcut_menu.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/save_object.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/save_molecule.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/render.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/props.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/png.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/pluginmanager.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/pluginitem.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/movieexport.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/load_traj.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/load_mtz.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/load_map.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/load_mae.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/load_aln.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/help_shortcut.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/fetch.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/create_shortcut.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/colors.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/change_confirm.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/askpartial.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
warning: build_py_pymol: byte-compiling is disabled, skipping.

running build_ext
building 'pymol._cmd' extension
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/build
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/build/generated
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/mmtf-c
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer4
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer5
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD build/generated/ShaderText.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/build/generated/ShaderText.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/mmtf-c/mmtf_parser.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/mmtf-c/mmtf_parser.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  669 |   fgets(fbuffer, 1024, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |   fgets(fbuffer, 1024, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  278 |     fgets(line, LINESIZE, mdf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  297 |       fgets(line, LINESIZE, mdf->file);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  319 |     fgets(line, LINESIZE, mdf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  357 |       fgets(line, LINESIZE, mdf->file);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  223 |     fgets(line, LINESIZE, mdf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |       fgets(line, LINESIZE, mdf->file);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘void* open_mdf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  164 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  176 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  183 |       fgets(line, LINESIZE, fd);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int getUniqueResID(char*, int)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable ‘i’ [-Wunused-variable]
  443 |   int i, uid;
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable ‘j’ [-Wunused-variable]
  484 |   int i, count, atomdata, pos, idx, xyzcount, j;
      |                                               ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable ‘oldChain’ [-Wunused-variable]
  503 |   char oldChain[8];
      |        ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readAngleBonds(molfile_atom_t*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable ‘bondTable’ [-Wunused-variable]
  803 |   int bondTable[32];
      |       ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable ‘j’ [-Wunused-variable]
  807 |   int i, pos, j, k;
      |               ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable ‘modelNum’ [-Wunused-variable]
  811 |   char modelNum[8];
      |        ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable ‘atom’ [-Wunused-variable]
  822 |   molfile_atom_t * atom;
      |                    ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable ‘test’ [-Wunused-variable]
  884 |   int test = parser->nbonds + bnum;
      |       ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readRMSDBonds(molfile_atom_t*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable ‘bondTable’ [-Wunused-variable]
  984 |   int bondTable[32];
      |       ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable ‘j’ [-Wunused-variable]
  988 |   int i, pos, j, k;
      |               ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable ‘modelNum’ [-Wunused-variable]
  991 |   char modelNum[8];
      |        ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable ‘atom’ [-Wunused-variable]
 1002 |   molfile_atom_t * atom;
      |                    ^~~~
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function ‘int read_parm7_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   78 |         fgets(buf, 85, file);
      |         ~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  204 |       fgets(buf, 85, file);
      |       ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  257 |       fgets(buf, 85, file);
      |       ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_resnames(const char*, int, char*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  275 |       fgets(buf, 85, file);
      |       ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  289 |   fscanf(file, " %d", &cur);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘void* open_file_write(const char*, const char*, int)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable ‘fd’ [-Wunused-variable]
 1409 |   FILE* fd;
      |         ^~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘parmstruct* read_parm7_header(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  368 |   fgets(sdum, 512, file);
      |   ~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  371 |   fscanf(file, "%s\n", sdum); // "%FLAG"
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  378 |   fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE"
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  385 |   fscanf(file, "%s\n", sdum); // "FORMAT (20a4)"
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  399 |   fgets(prm->title, sizeof(prm->title), file);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  427 |     fgets(sdum, sizeof(sdum), file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  439 |   fscanf(file,parm7,
      |   ~~~~~~^~~~~~~~~~~~
  440 |          &prm->Natom,  &prm->Ntypes, &prm->Nbonh, &prm->Nbona,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  441 |          &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  442 |          &prm->Jparm,  &prm->Nparm);
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  443 |   fscanf(file, parm7,
      |   ~~~~~~^~~~~~~~~~~~~
  444 |          &prm->Nnb,   &prm->Nres,   &prm->Mbona,  &prm->Mtheta,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  445 |          &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  446 |          &prm->Natyp, &prm->Nphb);
      |          ~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  447 |   fscanf(file, parm7,  &prm->Ifpert, &prm->Nbper,  &prm->Ngper,
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  448 |          &prm->Ndper, &prm->Mbper,  &prm->Mgper, &prm->Mdper,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  449 |          &prm->IfBox, &prm->Nmxrs,  &prm->IfCap);
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  451 |   fscanf(file,"%8d",&prm->Numextra); //BB
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int read_parm7_flag(FILE*, const char*, const char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   79 |   fscanf(file, "%s\n", buf);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   87 |   fscanf(file, "%s\n", buf);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   97 |   fscanf(file, "%s\n", buf);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_data’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  238 |   for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file);
      |                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_metadata’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  150 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘open_vaspparchg_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   71 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   75 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   81 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  103 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  131 |   for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘int read_edm_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  240 |   fgets(readbuf, 13, edm->fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘void eatline(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   44 |   fgets(readbuf, 1024, fd);    // go on to next line
      |   ~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘void* open_uhbd_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  102 |   fread(&headersize, sizeof(int), 1, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘open_namdbin_read’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   78 |   fread(&filen, sizeof(namdbin_int32), 1, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  275 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  289 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  199 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  209 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  127 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  138 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘void* open_mol2_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   74 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   81 |   fgets(line, LINESIZE, fd);  // Read and ignore the mol_name
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   82 |   fgets(line, LINESIZE, fd);  // Read the molecule info
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   91 |   fgets(line, LINESIZE, fd);  // Read and ignore the mol_type
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |   fgets(line, LINESIZE, fd);  // Read the charge_type
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘int read_brix_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  247 |         fread(brick, sizeof(char), 512, fd);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘void* open_brix_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   79 |   fscanf(fd, "%3s", keyWord);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   86 |   fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   93 |   fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  100 |   fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  109 |   fscanf(fd, " %s %f %f %f %f %f %f", keyWord,
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  110 |          &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma);
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  123 |   fscanf(fd, " %s %f", keyWord, &prod);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  128 |   fscanf(fd, " %s %f", keyWord, &plus);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  135 |   fscanf(fd, " %s %f", keyWord, &sigma);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function ‘void* open_grid_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   84 |   fread(&dataBegin, sizeof(int), 1, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  224 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  174 |   for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  180 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  189 |  for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  194 |    fgets(lineptr, LINESIZE, data->file);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  204 |  for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  232 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  237 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  246 |   for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  249 |   if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file);
      |                                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  256 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘open_vasp5xdatcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  195 |  for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  198 |  if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file);
      |                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  203 |    fgets(lineptr, LINESIZE, data->file);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   69 |   for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   72 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   77 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘open_vaspposcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   69 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   73 |   for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   87 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘int read_dsn6_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  233 |         fread(brick, sizeof(char), 512, fd);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘void* open_dsn6_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   91 |   fread(fileHeader, sizeof(short), 19, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function ‘int {anonymous}::ReadPARM::readparm(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  435 |           fscanf(file, " " DBLFMT, &prm->Charges[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  444 |           fscanf(file, " " DBLFMT, &prm->Masses[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  510 |           fscanf(file, " " DBLFMT, &prm->Rk[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  517 |           fscanf(file, " " DBLFMT, &prm->Req[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  524 |           fscanf(file, " " DBLFMT, &prm->Tk[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  531 |           fscanf(file, " " DBLFMT, &prm->Teq[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  538 |           fscanf(file, " " DBLFMT, &prm->Pk[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  545 |           fscanf(file, " " DBLFMT, &prm->Pn[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  552 |           fscanf(file, " " DBLFMT, &prm->Phase[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |           fscanf(file, " " DBLFMT, &prm->Solty[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  567 |           fscanf(file, " " DBLFMT, &prm->Cn1[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  575 |           fscanf(file, " " DBLFMT, &prm->Cn2[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  756 |           fscanf(file, " " DBLFMT, &prm->HB12[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  763 |           fscanf(file, " " DBLFMT, &prm->HB6[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  771 |           fscanf(file, " " DBLFMT, &H[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  853 |                 fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT,
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  854 |                                 &prm->Box[0], &prm->Box[1], &prm->Box[2]);
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  867 |                 fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT,
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  868 |                                 &prm->Natcap, &prm->Cutcap,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~
  869 |                                 &prm->Xcap, &prm->Ycap, &prm->Zcap);
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function ‘int read_spider_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  286 |   fread(datablock, total * sizeof(float), 1, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function ‘void* open_fs4_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   79 |   fread(&dataBegin, sizeof(int), 1, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function ‘void* open_cube_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  175 |   fgets(readbuf, 1023, cube->fd);    // go on to next line
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  181 |   fgets(readbuf, 1023, cube->fd); // skip second header line
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:326:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  326 |       fgets(readbuf, 1023, cube->fd);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  337 |       fgets(readbuf, 1023, cube->fd);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:339:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  339 |     fscanf(cube->fd, "%d", &cube->nsets);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:344:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  344 |       fscanf(cube->fd, "%d", &orb);
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:349:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  349 |     fgets(readbuf, 1023, cube->fd);  // gobble up rest of line
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  326 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  339 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  344 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  349 |   fgets(line, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  363 |       fgets(line, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  373 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  266 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  268 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  272 |   fgets(line, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  295 |       fgets(line, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  305 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘open_car_read’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  169 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  179 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  182 |     fgets(line, LINESIZE, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  210 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  213 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  224 |     fgets(line, LINESIZE, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  226 |     fgets(line, LINESIZE, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  230 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  234 |       fgets(line, LINESIZE, fd);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  245 |     fgets(line, LINESIZE, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function ‘int mdio_readline(md_file*, char*, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  426 |         fgets(buf, n, mf->f);
      |         ~~~~~^~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘count_orbitals’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1165 |   fscanf(data->file, " Ene= %f\n", &orbenergy);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1166 |   fscanf(data->file, " Spin= %s\n", spin);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1167 |   fscanf(data->file, " Occup= %f\n", &occu);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘eatline’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  840 |     fgets(readbuf, 1024, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘open_molden_read’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  224 |           fscanf(data->file, "%d", &natm);
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_data’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  237 |   for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file);
      |                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  282 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_metadata’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  150 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘open_vaspchgcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   71 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   75 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   81 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  103 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  131 |   for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  243 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  252 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  328 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  346 |   fgets(line, LINESIZE, bgf->file);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  355 |     fgets(nextline, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  419 |         fgets(line, LINESIZE, bgf->file);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  194 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  203 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘void* open_bgf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   59 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   96 |     fgets(line, 80, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  104 |     fgets(line, 80, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  119 |       fgets(line, 80, infile);
      |       ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  131 |         fgets(line, 80, infile);
      |         ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  153 |       fgets(line, 80, infile);
      |       ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  162 |       fgets(line, 80, infile);
      |       ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  171 |       fgets(line, 80, infile);
      |       ~~~~~^~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘read_vaspxdatcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  283 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘read_vaspxdatcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:228:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  228 |   for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:233:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  233 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:237:32: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  237 |       for (i = 0; i < 2; ++i)  fgets(lineptr, LINESIZE, data->file);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:252:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  252 |   for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘open_vaspxdatcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:89:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   89 |   fgets(lineptr, LINESIZE, poscar);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |   fgets(lineptr, LINESIZE, poscar);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:97:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   97 |     fgets(lineptr, LINESIZE, poscar);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:111:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  111 |   fgets(lineptr, LINESIZE, poscar);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  121 |       fgets(lineptr, LINESIZE, poscar);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘void* open_ccp4_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  304 |       fgets(symData, 81, fd);
      |       ~~~~~^~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘eatline’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  840 |     fgets(readbuf, 1024, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  239 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  242 |         fgets(lineptr, LINESIZE, data->file);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  204 |         fgets(lineptr, LINESIZE, data->file);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘open_vaspoutcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:10: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   87 |          fgets(lineptr, LINESIZE, data->file);
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘read_vaspxml_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  139 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  144 |         fgets(lineptr, LINESIZE, data->file);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘open_vaspxml_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   86 |        fgets(lineptr, LINESIZE, data->file);
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |        fgets(lineptr, LINESIZE, data->file);
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function ‘void* open_plt_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   69 |   fread(intHeader, sizeof(int), 5, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   82 |   fread(floatHeader, sizeof(float), 6, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function ‘open_binpos_read’:
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   64 |   fread(magicchar,sizeof(char),4,fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   72 |   fread(&igarb,sizeof(int),1,fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Crystal.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Crystal.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Field.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Field.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Isosurf.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Isosurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/MemoryDebug.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/MemoryDebug.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void put_element_ply(PlyFile*, void*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable ‘i’ [-Wunused-variable]
  459 |   int i,j,k;
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void ascii_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable ‘i’ [-Wunused-variable]
 1407 |   int i,j,k;
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable ‘i’ [-Wunused-variable]
 1541 |   int i,j,k;
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1629 |       fread (&len, sizeof(int), 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1631 |       fread (str, len, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void get_binary_item(FILE*, int, int*, unsigned int*, double*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2057 |       fread (ptr, 1, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2063 |       fread (ptr, 1, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2069 |       fread (ptr, 2, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2075 |       fread (ptr, 2, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2081 |       fread (ptr, 4, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2087 |       fread (ptr, 4, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2093 |       fread (ptr, 4, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2099 |       fread (ptr, 8, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Block.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Block.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function ‘open_rst_read’:
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   67 |   fgets(title, 82, fd);
      |   ^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   70 |   fgets(line, 82, fd);
      |   ^~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘char* recreate_command_line(int, char**)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
 1334 |   line[0] = '\0';
      |   ~~~~~~~~^~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by ‘malloc’
 1333 |   line = (char *) malloc (sizeof(char) * len);
      |                   ~~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  371 |         fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Pixmap.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Pixmap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  306 |         fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/MemoryUsage.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/MemoryUsage.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/hash.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Sphere.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Sphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   91 |     fgets(line, 80, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  116 |     fgets(line, 80, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  132 |    fgets(line, 80, infile);
      |    ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  149 |      fgets(line, 80, infile);
      |      ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  155 |               fgets(line, 80, infile);
      |               ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  161 |      fgets(line, 80, infile); //one more read to keep us in sync
      |      ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  170 |                      fgets(line, 80, infile);
      |                      ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  217 |          fgets(line, 80, infile);
      |          ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  237 |                  fgets(line, 80, infile);
      |                  ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  256 |          fgets(line, 80, infile);
      |          ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  288 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  297 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  365 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  387 |   fgets(line, LINESIZE, bgf->file);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  395 |     fgets(nextline, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  455 |         fgets(line, LINESIZE, bgf->file);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  250 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Triangle.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Triangle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘void* open_xbgf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   72 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/mmtf-c/mmtf_parser.cpp: In function ‘bool MMTF_unpack_from_file(const char*, MMTF_container*)’:
contrib/mmtf-c/mmtf_parser.cpp:1071:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1071 |     fread(buffer, fileLen, 1, file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Word.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Word.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Basis.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Basis.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer0/MemoryUsage.cpp: In function ‘size_t pymol::memory_usage()’:
layer0/MemoryUsage.cpp:38:21: warning: use of assignment suppression and length modifier together in gnu_scanf format [-Wformat=]
   38 |     std::fscanf(fp, "%*zu%zu", &vmRSS);
      |                     ^~~~~~~~~
layer0/MemoryUsage.cpp:38:16: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   38 |     std::fscanf(fp, "%*zu%zu", &vmRSS);
      |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/MyPNG.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/MyPNG.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/PostProcess.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/PostProcess.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Character.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Character.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Tetsurf.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Tetsurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void eatline(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  238 |   fgets(readbuf, 1024, fd);    // go on to next line
      |   ~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void* open_xsf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  408 |         fgets(readbuf, 256, xsf->fd);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  442 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  444 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  446 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  448 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  450 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  473 |                 fgets(readbuf, 256, xsf->fd);
      |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  508 |           fgets(readbuf, 256, xsf->fd);
      |           ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/CarveHelper.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/CarveHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function ‘int {anonymous}::write_structure(void*, int, const molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1904:9: warning: unused variable ‘last_ctnumber’ [-Wunused-variable]
 1904 |     int last_ctnumber = -1;
      |         ^~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Font.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Font.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Deferred.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Deferred.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/File.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/File.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/ContourSurf.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/ContourSurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Err.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Err.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/ccealignmodule.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/ccealignmodule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/FontGLUT.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/FontGLUT.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Parse.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Parse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/ShaderMgr.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/ShaderMgr.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘void line3(FILE*, GRASSP*)’:
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  186 |   fread(line3, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro ‘TRASH’
  284 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  285 |   fread(line, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro ‘TRASH’
  291 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro ‘TRASH’
  305 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  306 |   fread(line, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro ‘TRASH’
  307 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro ‘TRASH’
  311 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro ‘TRASH’
  313 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro ‘TRASH’
  318 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  319 |   fread(line, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro ‘TRASH’
  320 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro ‘TRASH’
  328 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  329 |   fread(line, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro ‘TRASH’
  330 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro ‘TRASH’
  354 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  355 |   fread(vertex, 3 * sizeof(float), nvert, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro ‘TRASH’
  356 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro ‘TRASH’
  357 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  358 |   fread(access, 3 * sizeof(float), nvert, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro ‘TRASH’
  359 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro ‘TRASH’
  360 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  361 |   fread(normal, 3 * sizeof(float), nvert, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro ‘TRASH’
  362 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro ‘TRASH’
  371 |     TRASH;
      |     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  372 |     fread(triangle, 3 * sizeof(int), ntriangles, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro ‘TRASH’
  373 |     TRASH;
      |     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro ‘TRASH’
  374 |     TRASH;
      |     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  375 |     fread(properties, 3 * sizeof(float), nvert, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro ‘TRASH’
  394 |     TRASH;
      |     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  395 |     fread(striangle, sizeof(short), 3 * ntriangles, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro ‘TRASH’
  396 |     TRASH;
      |     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro ‘TRASH’
  397 |     TRASH;
      |     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  398 |     fread(properties, sizeof(float), 3 * nvert, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/FontGLUTHel10.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/FontGLUTHel10.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/GenericBuffer.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/GenericBuffer.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Movie.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Movie.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Feedback.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Feedback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/FontGLUTHel12.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/FontGLUTHel12.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Color.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Color.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Picking.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Picking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/FontGLUTHel18.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/FontGLUTHel18.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/FontType.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/FontType.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Pop.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Pop.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘DEN_read_volumetric_data’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  970 |     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  971 |     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘POT_read_volumetric_data’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1113 |     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1114 |     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘abinit_header’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1511 |   fread(skip, 1, 8, fp);
      |   ^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘GEO_read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  619 |     fscanf(data->file, "%*s %f %f %f", &x, &y, &z);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Rep.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Rep.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/ButMode.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/ButMode.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/GraphicsUtil.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/GraphicsUtil.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/FontGLUT8x13.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/FontGLUT8x13.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Util.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Util.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/PyMOLObject.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/PyMOLObject.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Map.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Map.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/FontGLUT9x15.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/FontGLUT9x15.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/SceneRay.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/SceneRay.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Texture.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Texture.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Setting.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Setting.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/SymOpTools.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/SymOpTools.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Util2.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Util2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/View.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/View.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Scene.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Scene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/AtomInfoHistory.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/AtomInfoHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/marching_cubes.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/marching_cubes.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Match.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Match.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/CGO.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/CGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Vector.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Vector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Symmetry.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Symmetry.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Tracker.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Tracker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Ortho.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Ortho.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/CoordSet.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/CoordSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Matrix.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Matrix.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Ray.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Ray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/MmodTyping.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/MmodTyping.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/SceneRender.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/SceneRender.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Wizard.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Wizard.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Text.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Text.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectAlignment.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectAlignment.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/BondTypeHistory.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/BondTypeHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/os_gl.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/os_gl.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectGadget.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectGadget.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/MmtfMoleculeReader.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/MmtfMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer1/Wizard.cpp: In member function ‘virtual int CWizard::release(int, int, int, int)’:
layer1/Wizard.cpp:571:18: warning: unused variable ‘wiz’ [-Wunused-variable]
  571 |         if (auto wiz = WizardGet(G)) {
      |                  ^~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/CifFile.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/CifFile.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/ShaderPrg.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/ShaderPrg.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/AssemblyHelpers.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/AssemblyHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/ScrollBar.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/ScrollBar.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectGadgetRamp.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectGadgetRamp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/DistSet.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/DistSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/P.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/P.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/Mol2Typing.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/Mol2Typing.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Control.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Control.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectMesh.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectCGO.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectCGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/AtomInfo.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/AtomInfo.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Seq.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Seq.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/CifMoleculeReader.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/CifMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/MolV3000.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/MolV3000.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectSlice.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectSlice.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepCartoon.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepCartoon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectGroup.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectGroup.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/GadgetSet.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/GadgetSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/SceneMouse.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/SceneMouse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Extrude.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Extrude.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/PConv.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/PConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectCallback.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectCallback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepDistLabel.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepDistLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectMap.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectMap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepMesh.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/HydrogenAdder.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/HydrogenAdder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectSurface.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectMolecule.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectMolecule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepSphere.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectDist.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectDist.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepWireBond.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepWireBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepDot.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepDot.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/VFont.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/VFont.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/ScenePicking.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/ScenePicking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/Executive.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/Executive.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Shaker.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Shaker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepSphereGenerate.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepSphereGenerate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepNonbonded.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepNonbonded.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/AtomIterators.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/AtomIterators.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepEllipsoid.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepEllipsoid.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/SymOp.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/SymOp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectVolume.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectVolume.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/MovieScene.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/MovieScene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/Sculpt.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/Sculpt.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/SymOpPConv.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/SymOpPConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/Selector.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/Selector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepSphereImmediate.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepSphereImmediate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer4/Cmd.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer4/Cmd.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepNonbondedSphere.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepNonbondedSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/CifDataValueFormatter.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/CifDataValueFormatter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepCylBond.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepCylBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer5/TestPyMOL.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer5/TestPyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepLabel.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/Editor.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/Editor.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepSurface.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepRibbon.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepRibbon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer5/main.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer5/main.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD ov/src/OVHeapArray.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVHeapArray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD ov/src/OVLexicon.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVLexicon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepAngle.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepAngle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD ov/src/OVOneToAny.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVOneToAny.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepDihedral.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepDihedral.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD ov/src/OVOneToOne.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVOneToOne.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/SculptCache.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/SculptCache.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD ov/src/OVRandom.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVRandom.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD ov/src/ov_utility.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/ov_utility.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/SideChainHelper.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/SideChainHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD ov/src/OVContext.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVContext.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD ov/src/OVHeap.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVHeap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/TypeFace.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/TypeFace.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/PlugIOManager.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/PlugIOManager.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepDistDash.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepDistDash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/COLLADA.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/COLLADA.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectMolecule2.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectMolecule2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/RingFinder.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/RingFinder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/Seeker.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/Seeker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer4/Menu.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer4/Menu.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer3/Executive.cpp: In function ‘void ExecutiveManageObject(PyMOLGlobals*, pymol::CObject*, int, int)’:
layer3/Executive.cpp:14473:11: warning: ‘char* strcpy(char*, const char*)’ writing between 1 and 256 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=]
14473 |     strcpy(rec->name, obj->Name);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘void ExecutiveManageSelection(PyMOLGlobals*, const char*)’:
layer3/Executive.cpp:14559:11: warning: ‘char* strcpy(char*, const char*)’ writing 1 or more bytes into a region of size 0 overflows the destination [-Wstringop-overflow=]
14559 |     strcpy(rec->name, name);
      |     ~~~~~~^~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer4/PopUp.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer4/PopUp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer5/PyMOL.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer5/PyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectMolecule3.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectMolecule3.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/SelectorTmp.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/SelectorTmp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/SpecRec.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/SpecRec.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/SpecRecSpecial.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/SpecRecSpecial.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/ExecutivePython.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/ExecutivePython.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/MaeExportHelpers.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/MaeExportHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=znver2 -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/MoleculeExporter.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/MoleculeExporter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=znver2 -std=c++0x /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/build/generated/ShaderText.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/mmtf-c/mmtf_parser.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o 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/var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepEllipsoid.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepLabel.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepMesh.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepNonbonded.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepNonbondedSphere.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepRibbon.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepSphere.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepSphereGenerate.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepSphereImmediate.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepSurface.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepWireBond.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/Sculpt.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/SculptCache.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/SideChainHelper.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/VFont.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/AtomIterators.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/CifDataValueFormatter.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/Editor.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/Executive.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/ExecutivePython.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/MaeExportHelpers.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/MoleculeExporter.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/MovieScene.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/PlugIOManager.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/RingFinder.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/Seeker.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/Selector.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/SelectorTmp.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/SpecRec.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/SpecRecSpecial.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer4/Cmd.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer4/Menu.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer4/PopUp.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer5/PyMOL.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer5/TestPyMOL.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer5/main.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVContext.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVHeap.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVHeapArray.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVLexicon.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVOneToAny.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVOneToOne.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVRandom.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/ov_utility.o -L/usr/lib64 -L/usr/lib -L/usr/lib64 -lpng -lfreetype -lxml2 -lGL -lGLEW -lnetcdf -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/_cmd.cpython-38-x86_64-linux-gnu.so -fopenmp
building 'chempy.champ._champ' extension
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/champ
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -Icontrib/champ -I/usr/include/python3.8 -c -MMD contrib/champ/champ.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/champ/champ.o
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -Icontrib/champ -I/usr/include/python3.8 -c -MMD contrib/champ/champ_module.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/champ/champ_module.o
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -Icontrib/champ -I/usr/include/python3.8 -c -MMD contrib/champ/chiral.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/champ/chiral.o
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -Icontrib/champ -I/usr/include/python3.8 -c -MMD contrib/champ/err2.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/champ/err2.o
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -Icontrib/champ -I/usr/include/python3.8 -c -MMD contrib/champ/feedback2.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/champ/feedback2.o
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -Icontrib/champ -I/usr/include/python3.8 -c -MMD contrib/champ/list.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/champ/list.o
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -Icontrib/champ -I/usr/include/python3.8 -c -MMD contrib/champ/os_memory.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/champ/os_memory.o
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -Icontrib/champ -I/usr/include/python3.8 -c -MMD contrib/champ/sort.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/champ/sort.o
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -Icontrib/champ -I/usr/include/python3.8 -c -MMD contrib/champ/strblock.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/champ/strblock.o
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=znver2 -fPIC -Icontrib/champ -I/usr/include/python3.8 -c -MMD contrib/champ/vla.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/champ/vla.o
contrib/champ/os_memory.c: In function ‘OSMemoryZero’:
contrib/champ/os_memory.c:55:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
   55 |   while(count&&(((int)p)&mask)) {
      |                  ^
contrib/champ/os_memory.c: In function ‘OSMemoryHashAdd’:
contrib/champ/os_memory.c:137:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  137 |   hash=(int)rec;
      |        ^
contrib/champ/os_memory.c: In function ‘OSMemoryHashRemove’:
contrib/champ/os_memory.c:150:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  150 |   hash=(int)rec;
      |        ^
x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=znver2 /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/champ/champ.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/champ/champ_module.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/champ/chiral.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/champ/err2.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/champ/feedback2.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/champ/list.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/champ/os_memory.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/champ/sort.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/champ/strblock.o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/champ/vla.o -L/usr/lib64 -o /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/champ/_champ.cpython-38-x86_64-linux-gnu.so
>>> Source compiled.
>>> Test phase [not enabled]: sci-chemistry/pymol-2.5.0

>>> Install sci-chemistry/pymol-2.5.0 into /var/tmp/portage/sci-chemistry/pymol-2.5.0/image
 [32;01m*[0m python3_8: running distutils-r1_run_phase python_install
python3.8 setup.py install --skip-build --root=/var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8 --pymol-path=/usr/share/pymol
fatal: not a git repository (or any parent up to mount point /var/tmp)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
running install
running install_lib
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/bmin
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bmin/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/bmin
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bmin/commands.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/bmin
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bmin/realtime.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/bmin
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bmin/state.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/bmin
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bmin/util.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/bmin
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/champ
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/champ/_champ.cpython-38-x86_64-linux-gnu.so -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/champ
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/champ/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/champ
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/champ/amber99.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/champ
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/champ/assign.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/champ
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/champ/formal_charges.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/champ
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/fast
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/fast/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/fast
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/fragments
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/fragments/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/fragments
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/mmtf
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/mmtf/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/mmtf
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/mmtf/io.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/mmtf
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/tinker
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/tinker/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/tinker
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/tinker/amber.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/tinker
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/tinker/keyword.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/tinker
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/tinker/realtime.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/tinker
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/tinker/state.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/tinker
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/arc.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bond_amber.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bond_mmff.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bonds.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/brick.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/cc1.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/charge.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/cif.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/cpv.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/dictdb.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/gamess1.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/gms.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/hetatm.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/io.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/lst.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/mae.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/map.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/mass.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/mmd.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/models.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/mol.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/mol2.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/neighbor.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/pdb.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/pkl.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/place.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/protein.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/protein_amber.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/protein_amber99.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/protein_mmff.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/protein_residues.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/sdf.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/solvate.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/water_amber.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/water_residues.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/chempy/xyz.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/forms
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms/askpartial.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/forms
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms/change_confirm.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/forms
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms/colors.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/forms
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms/create_shortcut.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/forms
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms/fetch.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/forms
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms/help_shortcut.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/forms
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms/load_aln.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/forms
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms/load_mae.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/forms
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms/load_map.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/forms
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms/load_mtz.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/forms
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms/load_traj.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/forms
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms/movieexport.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/forms
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms/pluginitem.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/forms
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms/pluginmanager.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/forms
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms/png.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/forms
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms/props.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/forms
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms/render.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/forms
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms/save_molecule.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/forms
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms/save_object.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/forms
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms/shortcut_menu.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/forms
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/forms
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/syntax
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/syntax/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/syntax
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/syntax/pml.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/syntax
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/syntax/pmlparser.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/syntax
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/syntax/python.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt/syntax
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/TextEditor.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/advanced_settings_gui.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/builder.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/file_dialogs.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/keymapping.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/mimic_pmg_tk.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/mimic_tk.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/properties_dialog.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/pymol_gl_widget.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/pymol_qt_gui.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/shortcut_menu_gui.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/volume.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_qt
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_tk
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_tk/skins
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_tk/skins/demo
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creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_tk/skins/normal
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copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins/normal/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_tk/skins/normal
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins/normal/builder.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_tk/skins/normal
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_tk/skins
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_tk/startup
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copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/ColorEditor.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_tk
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/Demo.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_tk
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/PMGApp.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_tk
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/PyMOLMapLoad.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_tk
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/SetEditor.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_tk
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/Setting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_tk
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/TextEditor.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_tk
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_tk
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/volume.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pmg_tk
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
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creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/Qt
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copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/Qt/utils.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/Qt
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/plugins
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copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins/installation.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/plugins
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins/legacysupport.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/plugins
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins/managergui.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/plugins
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins/managergui_qt.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/plugins
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins/repository.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/plugins
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copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard/measurement.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/wizard
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard/message.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/wizard
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard/mutagenesis.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/wizard
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard/nucmutagenesis.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/wizard
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard/openvr.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/wizard
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard/pair_fit.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/wizard
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard/pseudoatom.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/wizard
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard/renaming.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/wizard
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard/sculpting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/wizard
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard/security.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/wizard
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard/stereodemo.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/wizard
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard/toggle.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/wizard
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/__main__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/_gui.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/api.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/callback.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/cgo.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/checking.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/cmd.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/colorprinting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/colorramping.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/commanding.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/completing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/computing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/constants.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/constants_palette.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/controlling.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/creating.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/diagnosing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/editing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/editor.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/experimenting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/exporting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/externing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/feedingback.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/fitting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/gui.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/headering.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/helping.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/importing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/internal.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/invocation.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/keyboard.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/keywords.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/lazyio.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/locking.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/menu.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/monitoring.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/morphing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/movie.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/moving.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/mpeg_encode.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/parser.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/parsing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/povray.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/preset.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/pymolhttpd.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/querying.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/rpc.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/save_shortcut.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/selecting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/selector.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/seqalign.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/setting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/shortcut.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/shortcut_dict.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/shortcut_manager.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/util.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/vfont.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/viewing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizarding.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/xray.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol/xwin.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol2
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copying /var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0-python3_8/lib/pymol2/cmd2.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol2
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/bmin/__init__.py to __init__.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/bmin/commands.py to commands.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/bmin/realtime.py to realtime.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/bmin/state.py to state.cpython-38.pyc
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byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/champ/__init__.py to __init__.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/champ/amber99.py to amber99.cpython-38.pyc
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byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/champ/formal_charges.py to formal_charges.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/fast/__init__.py to __init__.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/fragments/__init__.py to __init__.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/mmtf/__init__.py to __init__.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/mmtf/io.py to io.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/tinker/__init__.py to __init__.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/tinker/amber.py to amber.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/tinker/keyword.py to keyword.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/tinker/realtime.py to realtime.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/tinker/state.py to state.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/chempy/__init__.py to __init__.cpython-38.pyc
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byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/headering.py to headering.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/helping.py to helping.cpython-38.pyc
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byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/invocation.py to invocation.cpython-38.pyc
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byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/keywords.py to keywords.cpython-38.pyc
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byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/monitoring.py to monitoring.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/morphing.py to morphing.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/movie.py to movie.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/moving.py to moving.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/mpeg_encode.py to mpeg_encode.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/parser.py to parser.cpython-38.pyc
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byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/povray.py to povray.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/preset.py to preset.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/pymolhttpd.py to pymolhttpd.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/querying.py to querying.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/rpc.py to rpc.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/save_shortcut.py to save_shortcut.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/selecting.py to selecting.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/selector.py to selector.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/seqalign.py to seqalign.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/setting.py to setting.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/shortcut.py to shortcut.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/shortcut_dict.py to shortcut_dict.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/shortcut_manager.py to shortcut_manager.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/util.py to util.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/vfont.py to vfont.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/viewing.py to viewing.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/wizarding.py to wizarding.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/xray.py to xray.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol/xwin.py to xwin.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol2/__init__.py to __init__.cpython-38.pyc
byte-compiling /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol2/cmd2.py to cmd2.cpython-38.pyc
writing byte-compilation script '/var/tmp/portage/sci-chemistry/pymol-2.5.0/temp/tmplrxy0_z5.py'
/usr/bin/python3.8 /var/tmp/portage/sci-chemistry/pymol-2.5.0/temp/tmplrxy0_z5.py
removing /var/tmp/portage/sci-chemistry/pymol-2.5.0/temp/tmplrxy0_z5.py
writing byte-compilation script '/var/tmp/portage/sci-chemistry/pymol-2.5.0/temp/tmp2o4icioc.py'
/usr/bin/python3.8 /var/tmp/portage/sci-chemistry/pymol-2.5.0/temp/tmp2o4icioc.py
removing /var/tmp/portage/sci-chemistry/pymol-2.5.0/temp/tmp2o4icioc.py
running install_egg_info
Writing /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python3.8/site-packages/pymol-2.5.0-py3.8.egg-info
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/share
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/share/pymol
copying LICENSE -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/share/pymol
copying data -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/share/pymol/data
copying test -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/share/pymol/test
copying examples -> /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/share/pymol/examples
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python-exec
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0/image/_python3.8/usr/lib/python-exec/python3.8
sed: can't read /var/tmp/portage/sci-chemistry/pymol-2.5.0/image//usr/lib/python3.8/site-packages/pmg_tk/startup/apbs_tools.py: No such file or directory
 [31;01m*[0m ERROR: sci-chemistry/pymol-2.5.0::gentoo failed (install phase):
 [31;01m*[0m   (no error message)
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m     ebuild.sh, line  125:  Called src_install
 [31;01m*[0m   environment, line 3812:  Called distutils-r1_src_install
 [31;01m*[0m   environment, line 1505:  Called _distutils-r1_run_foreach_impl 'python_install'
 [31;01m*[0m   environment, line  498:  Called python_foreach_impl 'distutils-r1_run_phase' 'python_install'
 [31;01m*[0m   environment, line 3387:  Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_install'
 [31;01m*[0m   environment, line 2832:  Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_install'
 [31;01m*[0m   environment, line 2830:  Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_install'
 [31;01m*[0m   environment, line  922:  Called distutils-r1_run_phase 'python_install'
 [31;01m*[0m   environment, line 1475:  Called python_install
 [31;01m*[0m   environment, line 3511:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m       sed -e '1d' -e "/APBS_BINARY_LOCATION/s:None:\"${EPREFIX}/usr/bin/apbs\":g" -e "/APBS_PSIZE_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/src/\":g" -e "/APBS_PDB2PQR_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/\":g" -i "${D}/$(python_get_sitedir)"/pmg_tk/startup/apbs_tools.py || die
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of `emerge --info '=sci-chemistry/pymol-2.5.0::gentoo'`,
 [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-chemistry/pymol-2.5.0::gentoo'`.
 [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-chemistry/pymol-2.5.0/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/pymol-2.5.0/temp/environment'.
 [31;01m*[0m Working directory: '/var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0'
 [31;01m*[0m S: '/var/tmp/portage/sci-chemistry/pymol-2.5.0/work/pymol-open-source-2.5.0'