sci-biology:bamtools-2.5.1:20210430-190733.log

sci-biology:bamtools-2.5.1:20210430-190733.log (text/plain), 26.35 KB, created by Toralf Förster on 2021-04-30 19:10:30 UTC

 * Package:    sci-biology/bamtools-2.5.1
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox splitdebug userpriv usersandbox

>>> Unpacking source...
>>> Unpacking bamtools-2.5.1.tar.gz to /var/tmp/portage/sci-biology/bamtools-2.5.1/work
>>> Source unpacked in /var/tmp/portage/sci-biology/bamtools-2.5.1/work
>>> Preparing source in /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1 ...
 * Working in BUILD_DIR: "/var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build"
 * Hardcoded definition(s) removed in CMakeLists.txt:
 *      set( CMAKE_BUILD_TYPE "Release" )
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1 ...
 * Working in BUILD_DIR: "/var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build"
cmake -C /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/gentoo_toolchain.cmake  /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1
loading initial cache file /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/gentoo_common_config.cmake
-- The CXX compiler identification is GNU 11.1.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Deprecation Warning at CMakeLists.txt:20 (cmake_policy):
  The OLD behavior for policy CMP0042 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


-- Found PkgConfig: x86_64-pc-linux-gnu-pkg-config (found version "1.7.4") 
-- Checking for one of the modules 'jsoncpp>=1'
Found system JsonCpp, not using bundled version
-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.11") 
-- <<< Gentoo configuration >>>
Build type      Gentoo
Install path    /usr
Compiler flags:
C               
C++             -pipe -march=native -fno-diagnostics-color  -Og -g
Linker flags:
Executable      -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0
Module          -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0
Shared          -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0

-- Configuring done
-- Generating done
-- Build files have been written to: /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1 ...
 * Working in BUILD_DIR: "/var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build"
ninja -v -j1 -l0
[1/63] cd /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src && /usr/bin/cmake -E copy_if_different /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/shared/bamtools_global.h /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/include/shared/bamtools_global.h
[2/63] cd /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api && /usr/bin/cmake -E copy_if_different /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/algorithms/Sort.h /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api/include/api/algorithms/Sort.h
[3/63] /usr/bin/x86_64-pc-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src  -pipe -march=native -fno-diagnostics-color  -Og -g -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o -MF src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o.d -o src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o -c /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/SamProgram.cpp
[4/63] /usr/bin/x86_64-pc-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src  -pipe -march=native -fno-diagnostics-color  -Og -g -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -MF src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o.d -o src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -c /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/SamProgramChain.cpp
[5/63] cd /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api && /usr/bin/cmake -E copy_if_different /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/api_global.h /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api/include/api/api_global.h && cd /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api && /usr/bin/cmake -E copy_if_different /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/BamAlgorithms.h /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api/include/api/BamAlgorithms.h && cd /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api && /usr/bin/cmake -E copy_if_different /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/BamAlignment.h /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api/include/api/BamAlignment.h && cd /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api && /usr/bin/cmake -E copy_if_different /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/BamAux.h /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api/include/api/BamAux.h && cd /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api && /usr/bin/cmake -E copy_if_different /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/BamConstants.h /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api/include/api/BamConstants.h && cd /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api && /usr/bin/cmake -E copy_if_different /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/BamIndex.h /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api/include/api/BamIndex.h && cd /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api && /usr/bin/cmake -E copy_if_different /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/BamMultiReader.h /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api/include/api/BamMultiReader.h && cd /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api && /usr/bin/cmake -E copy_if_different /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/BamReader.h /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api/include/api/BamReader.h && cd /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api && /usr/bin/cmake -E copy_if_different /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/BamWriter.h /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api/include/api/BamWriter.h && cd /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api && /usr/bin/cmake -E copy_if_different /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/IBamIODevice.h /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api/include/api/IBamIODevice.h && cd /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api && /usr/bin/cmake -E copy_if_different /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/SamConstants.h /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api/include/api/SamConstants.h && cd /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api && /usr/bin/cmake -E copy_if_different /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/SamHeader.h /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api/include/api/SamHeader.h && cd /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api && /usr/bin/cmake -E copy_if_different /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/SamProgram.h /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api/include/api/SamProgram.h && cd /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api && /usr/bin/cmake -E copy_if_different /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/SamProgramChain.h /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api/include/api/SamProgramChain.h && cd /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api && /usr/bin/cmake -E copy_if_different /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/SamReadGroup.h /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api/include/api/SamReadGroup.h && cd /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api && /usr/bin/cmake -E copy_if_different /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/SamReadGroupDictionary.h /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api/include/api/SamReadGroupDictionary.h && cd /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api && /usr/bin/cmake -E copy_if_different /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/SamSequence.h /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api/include/api/SamSequence.h && cd /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api && /usr/bin/cmake -E copy_if_different /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/SamSequenceDictionary.h /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build/src/api/include/api/SamSequenceDictionary.h
[6/63] /usr/bin/x86_64-pc-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src  -pipe -march=native -fno-diagnostics-color  -Og -g -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o -MF src/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o.d -o src/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o -c /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/BamAlignment.cpp
[7/63] /usr/bin/x86_64-pc-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src  -pipe -march=native -fno-diagnostics-color  -Og -g -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -MF src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o.d -o src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -c /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/BamMultiReader.cpp
[8/63] /usr/bin/x86_64-pc-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src  -pipe -march=native -fno-diagnostics-color  -Og -g -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/BamReader.cpp.o -MF src/api/CMakeFiles/BamTools.dir/BamReader.cpp.o.d -o src/api/CMakeFiles/BamTools.dir/BamReader.cpp.o -c /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/BamReader.cpp
[9/63] /usr/bin/x86_64-pc-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src  -pipe -march=native -fno-diagnostics-color  -Og -g -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o -MF src/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o.d -o src/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o -c /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/BamWriter.cpp
[10/63] /usr/bin/x86_64-pc-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src  -pipe -march=native -fno-diagnostics-color  -Og -g -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o -MF src/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o.d -o src/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o -c /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/SamHeader.cpp
[11/63] /usr/bin/x86_64-pc-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src  -pipe -march=native -fno-diagnostics-color  -Og -g -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -MF src/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o.d -o src/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -c /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/SamReadGroup.cpp
[12/63] /usr/bin/x86_64-pc-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src  -pipe -march=native -fno-diagnostics-color  -Og -g -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -MF src/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o.d -o src/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -c /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/SamReadGroupDictionary.cpp
[13/63] /usr/bin/x86_64-pc-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src  -pipe -march=native -fno-diagnostics-color  -Og -g -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o -MF src/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o.d -o src/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o -c /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/SamSequence.cpp
[14/63] /usr/bin/x86_64-pc-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src  -pipe -march=native -fno-diagnostics-color  -Og -g -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -MF src/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o.d -o src/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -c /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/SamSequenceDictionary.cpp
[15/63] /usr/bin/x86_64-pc-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src  -pipe -march=native -fno-diagnostics-color  -Og -g -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -MF src/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o.d -o src/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -c /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/internal/bam/BamHeader_p.cpp
[16/63] /usr/bin/x86_64-pc-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src  -pipe -march=native -fno-diagnostics-color  -Og -g -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -MF src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o.d -o src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -c /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/internal/bam/BamMultiReader_p.cpp
FAILED: src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o 
/usr/bin/x86_64-pc-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src  -pipe -march=native -fno-diagnostics-color  -Og -g -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -MF src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o.d -o src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -c /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/internal/bam/BamMultiReader_p.cpp
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/include/g++-v11/map:60,
                 from /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/BamMultiReader.h:13,
                 from /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/internal/bam/BamMultiReader_p.h:25,
                 from /var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/internal/bam/BamMultiReader_p.cpp:10:
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/include/g++-v11/bits/stl_tree.h: In instantiation of ‘static const _Key& std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_S_key(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_Const_Link_type) [with _Key = BamTools::Internal::MergeItem; _Val = BamTools::Internal::MergeItem; _KeyOfValue = std::_Identity<BamTools::Internal::MergeItem>; _Compare = BamTools::Internal::MergeItemSorter<BamTools::Algorithms::Sort::ByName>; _Alloc = std::allocator<BamTools::Internal::MergeItem>; std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_Const_Link_type = const std::_Rb_tree_node<BamTools::Internal::MergeItem>*]’:
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/include/g++-v11/bits/stl_tree.h:2100:44:   required from ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_equal_pos(const key_type&) [with _Key = BamTools::Internal::MergeItem; _Val = BamTools::Internal::MergeItem; _KeyOfValue = std::_Identity<BamTools::Internal::MergeItem>; _Compare = BamTools::Internal::MergeItemSorter<BamTools::Algorithms::Sort::ByName>; _Alloc = std::allocator<BamTools::Internal::MergeItem>; std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::key_type = BamTools::Internal::MergeItem]’
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/include/g++-v11/bits/stl_tree.h:2149:4:   required from ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_equal(_Arg&&) [with _Arg = const BamTools::Internal::MergeItem&; _Key = BamTools::Internal::MergeItem; _Val = BamTools::Internal::MergeItem; _KeyOfValue = std::_Identity<BamTools::Internal::MergeItem>; _Compare = BamTools::Internal::MergeItemSorter<BamTools::Algorithms::Sort::ByName>; _Alloc = std::allocator<BamTools::Internal::MergeItem>; std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator = std::_Rb_tree<BamTools::Internal::MergeItem, BamTools::Internal::MergeItem, std::_Identity<BamTools::Internal::MergeItem>, BamTools::Internal::MergeItemSorter<BamTools::Algorithms::Sort::ByName>, std::allocator<BamTools::Internal::MergeItem> >::iterator]’
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/include/g++-v11/bits/stl_multiset.h:503:36:   required from ‘std::multiset<_Key, _Compare, _Alloc>::iterator std::multiset<_Key, _Compare, _Alloc>::insert(const value_type&) [with _Key = BamTools::Internal::MergeItem; _Compare = BamTools::Internal::MergeItemSorter<BamTools::Algorithms::Sort::ByName>; _Alloc = std::allocator<BamTools::Internal::MergeItem>; std::multiset<_Key, _Compare, _Alloc>::iterator = std::_Rb_tree<BamTools::Internal::MergeItem, BamTools::Internal::MergeItem, std::_Identity<BamTools::Internal::MergeItem>, BamTools::Internal::MergeItemSorter<BamTools::Algorithms::Sort::ByName>, std::allocator<BamTools::Internal::MergeItem> >::const_iterator; std::multiset<_Key, _Compare, _Alloc>::value_type = BamTools::Internal::MergeItem]’
/var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/internal/bam/BamMultiMerger_p.h:135:18:   required from ‘void BamTools::Internal::MultiMerger<Compare>::Add(BamTools::Internal::MergeItem) [with Compare = BamTools::Algorithms::Sort::ByName]’
/var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/internal/bam/BamMultiMerger_p.h:128:13:   required from here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/include/g++-v11/bits/stl_tree.h:770:15: error: static assertion failed: comparison object must be invocable as const
  770 |               is_invocable_v<const _Compare&, const _Key&, const _Key&>,
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/include/g++-v11/bits/stl_tree.h:770:15: note: ‘std::is_invocable_v<const BamTools::Internal::MergeItemSorter<BamTools::Algorithms::Sort::ByName>&, const BamTools::Internal::MergeItem&, const BamTools::Internal::MergeItem&>’ evaluates to false
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/include/g++-v11/bits/stl_tree.h: In instantiation of ‘static const _Key& std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_S_key(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_Const_Link_type) [with _Key = BamTools::Internal::MergeItem; _Val = BamTools::Internal::MergeItem; _KeyOfValue = std::_Identity<BamTools::Internal::MergeItem>; _Compare = BamTools::Internal::MergeItemSorter<BamTools::Algorithms::Sort::ByPosition>; _Alloc = std::allocator<BamTools::Internal::MergeItem>; std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_Const_Link_type = const std::_Rb_tree_node<BamTools::Internal::MergeItem>*]’:
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/include/g++-v11/bits/stl_tree.h:2100:44:   required from ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_equal_pos(const key_type&) [with _Key = BamTools::Internal::MergeItem; _Val = BamTools::Internal::MergeItem; _KeyOfValue = std::_Identity<BamTools::Internal::MergeItem>; _Compare = BamTools::Internal::MergeItemSorter<BamTools::Algorithms::Sort::ByPosition>; _Alloc = std::allocator<BamTools::Internal::MergeItem>; std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::key_type = BamTools::Internal::MergeItem]’
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/include/g++-v11/bits/stl_tree.h:2149:4:   required from ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_equal(_Arg&&) [with _Arg = const BamTools::Internal::MergeItem&; _Key = BamTools::Internal::MergeItem; _Val = BamTools::Internal::MergeItem; _KeyOfValue = std::_Identity<BamTools::Internal::MergeItem>; _Compare = BamTools::Internal::MergeItemSorter<BamTools::Algorithms::Sort::ByPosition>; _Alloc = std::allocator<BamTools::Internal::MergeItem>; std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator = std::_Rb_tree<BamTools::Internal::MergeItem, BamTools::Internal::MergeItem, std::_Identity<BamTools::Internal::MergeItem>, BamTools::Internal::MergeItemSorter<BamTools::Algorithms::Sort::ByPosition>, std::allocator<BamTools::Internal::MergeItem> >::iterator]’
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/include/g++-v11/bits/stl_multiset.h:503:36:   required from ‘std::multiset<_Key, _Compare, _Alloc>::iterator std::multiset<_Key, _Compare, _Alloc>::insert(const value_type&) [with _Key = BamTools::Internal::MergeItem; _Compare = BamTools::Internal::MergeItemSorter<BamTools::Algorithms::Sort::ByPosition>; _Alloc = std::allocator<BamTools::Internal::MergeItem>; std::multiset<_Key, _Compare, _Alloc>::iterator = std::_Rb_tree<BamTools::Internal::MergeItem, BamTools::Internal::MergeItem, std::_Identity<BamTools::Internal::MergeItem>, BamTools::Internal::MergeItemSorter<BamTools::Algorithms::Sort::ByPosition>, std::allocator<BamTools::Internal::MergeItem> >::const_iterator; std::multiset<_Key, _Compare, _Alloc>::value_type = BamTools::Internal::MergeItem]’
/var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/internal/bam/BamMultiMerger_p.h:135:18:   required from ‘void BamTools::Internal::MultiMerger<Compare>::Add(BamTools::Internal::MergeItem) [with Compare = BamTools::Algorithms::Sort::ByPosition]’
/var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1/src/api/internal/bam/BamMultiMerger_p.h:128:13:   required from here
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/include/g++-v11/bits/stl_tree.h:770:15: error: static assertion failed: comparison object must be invocable as const
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/include/g++-v11/bits/stl_tree.h:770:15: note: ‘std::is_invocable_v<const BamTools::Internal::MergeItemSorter<BamTools::Algorithms::Sort::ByPosition>&, const BamTools::Internal::MergeItem&, const BamTools::Internal::MergeItem&>’ evaluates to false
ninja: build stopped: subcommand failed.
 * ERROR: sci-biology/bamtools-2.5.1::gentoo failed (compile phase):
 *   ninja -v -j1 -l0 failed
 * 
 * Call stack:
 *     ebuild.sh, line  125:  Called src_compile
 *   environment, line 2090:  Called cmake_src_compile
 *   environment, line  786:  Called cmake_build
 *   environment, line  755:  Called eninja
 *   environment, line 1207:  Called die
 * The specific snippet of code:
 *       "$@" || die "${nonfatal_args[@]}" "${*} failed"
 * 
 * If you need support, post the output of `emerge --info '=sci-biology/bamtools-2.5.1::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-biology/bamtools-2.5.1::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-biology:bamtools-2.5.1:20210430-190733.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/bamtools-2.5.1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-biology/bamtools-2.5.1/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1_build'
 * S: '/var/tmp/portage/sci-biology/bamtools-2.5.1/work/bamtools-2.5.1'