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Gentoo's Bugzilla – Attachment 702756 Details for
Bug 786204
[guru] sys-cluster/sionlib-1.7.6-r1 fails tests
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build.log
build.log (text/plain), 45.07 KB, created by
Agostino Sarubbo
on 2021-04-28 06:30:46 UTC
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hide
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Description:
build.log
Filename:
MIME Type:
Creator:
Agostino Sarubbo
Created:
2021-04-28 06:30:46 UTC
Size:
45.07 KB
patch
obsolete
> * Package: sys-cluster/sionlib-1.7.6-r1 > * Repository: guru > * Maintainer: lssndrbarbieri@gmail.com > * USE: abi_x86_64 amd64 cxx elibc_glibc fortran kernel_linux mpi ompi openmp parutils pthreads userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox test userpriv usersandbox > > >@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ >This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; >This ebuild was merged at the following commit: >https://github.com/gentoo/gentoo/commit/d32ad2ccd174f6d5df04d38e87e801545814e391 (Tue Apr 27 23:22:37 UTC 2021) >@@@@@ END @@@@@ > > > >@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ >This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; >This ebuild was merged at the following commit: >https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=c35a513312639f63de5a974afa2ceea7dd9890c4 (Tue Apr 27 23:22:43 UTC 2021) >@@@@@ END @@@@@ > > > >emerge --info: >Portage 3.0.18 (python 3.9.4-final-0, default/linux/amd64/17.1, gcc-11.1.0, glibc-2.33, 4.19.174-gentoo x86_64) >================================================================= >System uname: Linux-4.19.174-gentoo-x86_64-Intel-R-_Xeon-R-_CPU_E5-2650_v4_@_2.20GHz-with-glibc2.33 >KiB Mem: 264031012 total, 209022932 free >KiB Swap: 0 total, 0 free >sh bash 5.1_p4 >ld GNU ld (Gentoo 2.36.1 p3) 2.36.1 >app-shells/bash: 5.1_p4::gentoo >dev-lang/perl: 5.32.1::gentoo >dev-lang/python: 2.7.18_p8::gentoo, 3.7.10_p1::gentoo, 3.8.9::gentoo, 3.9.4::gentoo >dev-lang/rust: 1.51.0-r2::gentoo >dev-util/cmake: 3.20.1::gentoo >sys-apps/baselayout: 2.7-r2::gentoo >sys-apps/openrc: 0.42.1-r1::gentoo >sys-apps/sandbox: 2.23::gentoo >sys-devel/autoconf: 2.13-r1::gentoo, 2.69-r5::gentoo >sys-devel/automake: 1.16.3-r1::gentoo >sys-devel/binutils: 2.36.1-r1::gentoo >sys-devel/gcc: 11.1.0::gentoo >sys-devel/gcc-config: 2.4::gentoo >sys-devel/libtool: 2.4.6-r6::gentoo >sys-devel/make: 4.3::gentoo >sys-kernel/linux-headers: 5.12::gentoo (virtual/os-headers) >sys-libs/glibc: 2.33::gentoo >Repositories: > >gentoo > location: /usr/portage > sync-type: rsync > sync-uri: rsync://rsync.gentoo.org/gentoo-portage > priority: -1000 > sync-rsync-extra-opts: > sync-rsync-verify-jobs: 1 > sync-rsync-verify-metamanifest: yes > sync-rsync-verify-max-age: 24 > >guru > location: /opt/guru > masters: gentoo > priority: 0 > >ACCEPT_KEYWORDS="amd64 ~amd64" >ACCEPT_LICENSE="* BSD" >CBUILD="x86_64-pc-linux-gnu" >CFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches" >CHOST="x86_64-pc-linux-gnu" >CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" >CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" >CXXFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches" >DISTDIR="/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/distdir" >EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -k -b" >ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" >FCFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches" >FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" >FFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches" >GENTOO_MIRRORS="http://distfiles.gentoo.org" >LANG="C.UTF8" >LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" >MAKEOPTS="-j48" >PKGDIR="/root/.packages" >PORTAGE_CONFIGROOT="/" >PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" >PORTAGE_TMPDIR="/var/tmp" >USE="acl amd64 berkdb bzip2 cli crypt cxx dri elogind fortran gdbm iconv ipv6 jumbo-build libglvnd libtirpc mpi multilib native-symlinks ncurses nls nptl ompi openmp pam parutils pcre pthreads readline seccomp split-usr ssl tcpd test unicode xattr zlib" ABI_X86="64" ELIBC="glibc" KERNEL="linux" USERLAND="GNU" >Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RUSTFLAGS > > > > > >emerge history: >2021-04-28T01:40:14 >>> x11-misc/util-macros-1.19.3 >2021-04-28T01:40:15 >>> virtual/fortran-0 >2021-04-28T01:40:15 >>> sys-apps/pciutils-3.7.0 >2021-04-28T01:40:15 >>> sys-libs/libomp-12.0.0 >2021-04-28T01:40:15 >>> media-fonts/font-util-1.3.2-r1 >2021-04-28T01:40:37 >>> x11-libs/libpciaccess-0.16 >2021-04-28T01:40:42 >>> sys-apps/hwloc-2.3.0 >2021-04-28T01:40:47 >>> sys-cluster/openmpi-4.0.5 >2021-04-28T01:40:54 >>> virtual/mpi-2.0-r5 >2021-04-28T01:40:59 >>> sys-cluster/sionlib-1.7.6-r1 > > > * Using following Fortran compiler: > * F77: x86_64-pc-linux-gnu-gfortran > * FC: x86_64-pc-linux-gnu-gfortran > * x86_64-pc-linux-gnu-gfortran has OPENMP support >>>> Unpacking source... >>>> Unpacking sionlib-1.7.6.tar.gz to /var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work >>>> Source unpacked in /var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work >>>> Preparing source in /var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib ... > * Applying respect-flags.patch ... > [ ok ] >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib ... >WARNING: Installation directory /var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/temp/prefix/usr not writable. > >INFO: Found x86_64-pc-linux-gnu-gcc > >Cannot open configuration file /usr/share/openmpi/opal_wrapper-wrapper-data.txt >Error parsing data file opal_wrapper: Not found >INFO: Found Open MPI /usr/bin/opal_wrapper > >Configuration for Linux cluster with GNU compilers and openmpi MPI >- Setting up build configuration (build-linux-gomp-openmpi) >- Generating GNUmakefile (using Makefile.basic) >- Generating Makefile.defs (using Makefile.defs.linux-gomp + optional.defs + lock.defs) >Configuring Makefile.defs >- Setting PREFIX=/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/temp/prefix/usr >- Configuring for gnu v11.1.0 compilers >- Using gfortran instead of g77 >- Configuring openmpi MPI library >- Using default 64-bit compilation mode >NOTE: Configured for PTHREADS support (using mutex_lock/unlock) > >#################################################################### >CONFIGURATION COMPLETE > >Next steps: > - cd build-linux-gomp-openmpi > - [optional] Edit Makefile.defs for further configuration > - make > - make install >#################################################################### >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib ... >make -j48 >make[1]: Entering directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi' >make[2]: Entering directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi' > >++++++++++ SETUP ++++++++++++++++++++++++++++++ >mkdir build >x86_64-pc-linux-gnu-gcc ../config/lndir.c -o build/lndir >cd build; ./lndir ../../src >../../src/cppinterface: >../../src/parlib: >../../src/utils: >../../src/fortraninterface: >../../src/parutils: >../../src/lib: >mkdir build/mf >cd build/mf; ../lndir ../../../mf >cd build; rm -f RealMakefile; ln -s ../../mf/RealMakefile . >cd build; rm -f GNUmakefile; ln -s RealMakefile GNUmakefile >cd build; rm -f Makefile; \ > ln -s ../../mf/Makefile.redirect Makefile >cd build; rm -f Makefile.defs; ln -s ../Makefile.defs Makefile.defs >mkdir build/examples >cd build/examples; ../lndir ../../../examples >../../../examples/par_mandel_fortran: >../../../examples/simple: >../../../examples/mp2c: >../../../examples/pepc: >../../../examples/par_mandel: >mkdir build/test >cd build/test; ../lndir ../../../test >../../../test/parallel: >../../../test/serial: >cd build/test; rm -f RealMakefile; ln -s ../../../mf/RealMakefile . >make[2]: Leaving directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi' >cd build; make -f RealMakefile all >make[2]: Entering directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build' >++++++++++ LIBS +++++++++++++++++++++++++++++++ >make[3]: Entering directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/lib' >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c -o sion_common.o sion_common.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c sion_fd.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c sion_filedesc.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c sion_file.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c sion_metadata.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c sion_tools.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c sion_debug.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c -o sion_error_handler.o sion_error_handler.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c sion_printts.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c sion_internal.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c sion_internal_seek.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c sion_internal_collstat.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c sion_internal_startptr.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c sion_convert.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c -o sion_buffer.o sion_buffer.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c sion_hints.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c sion_hints_linux.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c sion_hints_gpfs.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c sion_cache.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c sion_dup.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c sion_keyvalue.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c sion_keyvalue_inline.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c sion_keyvalue_table.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c sion_keyvalue_keymngr.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c -o sion_buddy_common.o sion_buddy_common.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c -o sion_flags.o sion_flags.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c sion_serial.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -DSION_USE_PTHREADS -c sion_lock.c -o sion_lock_pthreads.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -D_SION_LINUX -DSION_PTHREADS -I. -I../parlib -I../cppinterface -c sion_lock.c -o sion_lock_none.o >ar -rcs libsionser_64.a sion_serial.o >*** libsionser_64.a built >ar -rcs libsioncom_64_lock_none.a sion_lock_none.o >*** libsioncom_64_lock_none.a built >ar -rcs libsioncom_64_lock_pthreads.a sion_lock_pthreads.o >*** libsioncom_64_lock_pthreads.a built >ar -rcs libsioncom_64.a sion_common.o sion_fd.o sion_filedesc.o sion_file.o sion_metadata.o sion_tools.o sion_debug.o sion_error_handler.o sion_printts.o sion_internal.o sion_internal_seek.o sion_internal_collstat.o sion_internal_startptr.o sion_convert.o sion_buffer.o sion_hints.o sion_hints_linux.o sion_hints_gpfs.o sion_cache.o sion_dup.o sion_keyvalue.o sion_keyvalue_inline.o sion_keyvalue_table.o sion_keyvalue_keymngr.o sion_buddy_common.o sion_flags.o >*** libsioncom_64.a built >make[3]: Leaving directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/lib' >++++++++++ PARLIBS ++++++++++++++++++++++++++++ >make[3]: Entering directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/parlib' >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -D_SION_LINUX -c sion_generic.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -D_SION_LINUX -c sion_generic_internal.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -D_SION_LINUX -c sion_generic_mapped.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -D_SION_LINUX -c sion_generic_collective.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -D_SION_LINUX -c sion_generic_collective_merge.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -D_SION_LINUX -c sion_generic_buddy.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -D_SION_LINUX -c sion_generic_apidesc.c >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -DSION_OMPI -fopenmp -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -D_SION_LINUX -c sion_lock.c >x86_64-pc-linux-gnu-gcc -DSION_OMP -fopenmp -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -D_SION_LINUX -c sion_omp_gen.c >x86_64-pc-linux-gnu-gcc -DSION_OMP -fopenmp -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -D_SION_LINUX -c sion_omp_cb_gen.c >x86_64-pc-linux-gnu-gcc -DSION_OMP -fopenmp -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -D_SION_LINUX -c sion_omp_internal_gen.c >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -DSION_MPI -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -D_SION_LINUX -c sion_mpi_gen.c >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -DSION_MPI -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -D_SION_LINUX -c sion_mpi_deprecated.c >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -DSION_MPI -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -D_SION_LINUX -c sion_mpi_cb_gen.c >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -DSION_MPI -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -D_SION_LINUX -c sion_mpi_coll_cb_gen.c >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -DSION_MPI -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -D_SION_LINUX -c sion_mpi_internal_gen.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -D_SION_LINUX -c -o sion_mpi_util.o sion_mpi_util.c >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -DSION_MPI -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -D_SION_LINUX -c sion_mpi_file_check.c >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -DSION_OMPI -fopenmp -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -D_SION_LINUX -c sion_ompi_gen.c >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -DSION_OMPI -fopenmp -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -D_SION_LINUX -c sion_ompi_cb_gen.c >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -DSION_OMPI -fopenmp -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -D_SION_LINUX -c sion_ompi_coll_cb_gen.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -D_SION_LINUX -c -o sion_ompi_util.o sion_ompi_util.c >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -DSION_OMPI -fopenmp -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -D_SION_LINUX -c sion_ompi_internal_gen.c >ar -rcs libsionomp_64.a sion_omp_gen.o sion_omp_cb_gen.o sion_omp_internal_gen.o sion_lock.o >*** libsionomp_64.a built >ar -rcs libsionmpi_64.a sion_mpi_gen.o sion_mpi_deprecated.o sion_mpi_cb_gen.o sion_mpi_coll_cb_gen.o sion_mpi_internal_gen.o sion_mpi_util.o sion_mpi_file_check.o sion_lock.o >*** libsionmpi_64.a built >ar -rcs libsionompi_64.a sion_ompi_gen.o sion_ompi_cb_gen.o sion_ompi_coll_cb_gen.o sion_ompi_util.o sion_ompi_internal_gen.o sion_lock.o >*** libsionompi_64.a built >ar -rcs libsiongen_64.a sion_generic.o sion_generic_internal.o sion_generic_mapped.o sion_generic_collective.o sion_generic_collective_merge.o sion_generic_buddy.o sion_generic_apidesc.o sion_lock.o >*** libsiongen_64.a built >make[3]: Leaving directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/parlib' >++++++++++ UTILS ++++++++++++++++++++++++++++++ >make[3]: Entering directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/utils' >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -I../parlib -I../cppinterface -D_SION_LINUX -DGIT_REV='"e7c4192"' -c siondump.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -I../parlib -I../cppinterface -D_SION_LINUX -DGIT_REV='"e7c4192"' -c siondefrag.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -I../parlib -I../cppinterface -D_SION_LINUX -DGIT_REV='"e7c4192"' -c sionsplit.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -I../parlib -I../cppinterface -D_SION_LINUX -DGIT_REV='"e7c4192"' -c sioncat.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -I../parlib -I../cppinterface -D_SION_LINUX -DGIT_REV='"e7c4192"' -c sionversion.c >x86_64-pc-linux-gnu-gcc -o sionversion sionversion.o -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -m64 -m64 -m64 -L../lib -lsionser_64 -lsioncom_64 -lsioncom_64_lock_none >x86_64-pc-linux-gnu-gcc -o sionsplit sionsplit.o -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -m64 -m64 -m64 -L../lib -lsionser_64 -lsioncom_64 -lsioncom_64_lock_none >x86_64-pc-linux-gnu-gcc -o sioncat sioncat.o -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -m64 -m64 -m64 -L../lib -lsionser_64 -lsioncom_64 -lsioncom_64_lock_none >x86_64-pc-linux-gnu-gcc -o siondump siondump.o -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -m64 -m64 -m64 -L../lib -lsionser_64 -lsioncom_64 -lsioncom_64_lock_none >x86_64-pc-linux-gnu-gcc -o siondefrag siondefrag.o -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -m64 -m64 -m64 -L../lib -lsionser_64 -lsioncom_64 -lsioncom_64_lock_none >cp siondump ../.. >make[3]: Leaving directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/utils' >++++++++++ CPPINTERFACE +++++++++++++++++++++++ >make[3]: Entering directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/cppinterface' >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -m64 -fPIC -m64 -fPIC -m64 -fPIC -DSION_PTHREADS -I. -I../lib -I../parlib -D_SION_LINUX -c sion_cxx_base.cpp >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -m64 -fPIC -m64 -fPIC -m64 -fPIC -DSION_PTHREADS -I. -I../lib -I../parlib -D_SION_LINUX -c sion_cxx_serial.cpp >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -m64 -fPIC -m64 -fPIC -m64 -fPIC -DSION_PTHREADS -I. -I../lib -I../parlib -D_SION_LINUX -c sion_cxx_common.cpp >OMPI_CXX="x86_64-pc-linux-gnu-g++" mpicxx -DSION_MPI -O2 -pipe -march=x86-64 -frecord-gcc-switches -m64 -fPIC -m64 -fPIC -m64 -fPIC -DSION_PTHREADS -I. -I../lib -I../parlib -D_SION_LINUX -c sion_cxx_mpi.cpp >ar -rcs libsionser_cxx_64.a sion_cxx_base.o sion_cxx_serial.o sion_cxx_common.o >*** libsionser_cxx_64.a built >ar -rcs libsionmpi_cxx_64.a sion_cxx_mpi.o >*** libsionmpi_cxx_64.a built >make[3]: Leaving directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/cppinterface' >++++++++++ FORTRANINTERFACE +++++++++++++++++++ >make[3]: Entering directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/fortraninterface' >x86_64-pc-linux-gnu-gcc -E -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -m64 -fPIC -m64 -fPIC -m64 -fPIC -DSION_PTHREADS -I. -I../lib -I../parlib -D_SION_LINUX -P -E -I ../lib sion_f77.H > sion_f77.h >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -I. -I../lib -I../parlib -D_FORTRANUNDERSCORE -c sion_fortran.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -I. -I../lib -I../parlib -D_FORTRANUNDERSCORE -c sion_fortran_writeread_f77.c >x86_64-pc-linux-gnu-gfortran -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -m64 -fPIC -m64 -fPIC -m64 -fPIC -c sion_f77_omp.f >x86_64-pc-linux-gnu-gcc -DSION_OMP -fopenmp -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -I. -I../lib -I../parlib -D_FORTRANUNDERSCORE -c sion_fortran_omp.c >OMPI_FC="x86_64-pc-linux-gnu-gfortran" mpif77 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -m64 -fPIC -m64 -fPIC -m64 -fPIC -c sion_f77_mpi.f >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -DSION_MPI -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -I. -I../lib -I../parlib -D_FORTRANUNDERSCORE -c sion_fortran_mpi.c >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -DSION_MPI -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -I. -I../lib -I../parlib -D_FORTRANUNDERSCORE -c sion_fortran_writeread_mpi_f77.c >OMPI_FC="x86_64-pc-linux-gnu-gfortran" mpif77 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -m64 -fPIC -m64 -fPIC -m64 -fPIC -c sion_f77_ompi.f >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -DSION_OMPI -fopenmp -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -I. -I../lib -I../parlib -D_FORTRANUNDERSCORE -c sion_fortran_ompi.c >x86_64-pc-linux-gnu-gcc -E -m64 -ffree-form -fPIC -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -DSION_PTHREADS -I. -I../lib -I../parlib -D_SION_LINUX -P -E -I ../lib sion_f90.F90 > sion_f90.f90 >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -I. -I../lib -I../parlib -D_FORTRANUNDERSCORE -c sion_fortran_writeread_f90.c >x86_64-pc-linux-gnu-gcc -E -m64 -ffree-form -fPIC -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -DSION_PTHREADS -I. -I../lib -I../parlib -D_SION_LINUX -P -E -I ../lib sion_f90_omp.F90 > sion_f90_omp.f90 >x86_64-pc-linux-gnu-gcc -E -m64 -ffree-form -fPIC -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -DSION_PTHREADS -I. -I../lib -I../parlib -D_SION_LINUX -P -E -I ../lib sion_f90_mpi.F90 > sion_f90_mpi.f90 >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -DSION_MPI -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -I. -I../lib -I../parlib -D_FORTRANUNDERSCORE -c sion_fortran_writeread_mpi_f90.c >x86_64-pc-linux-gnu-gcc -E -m64 -ffree-form -fPIC -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -DSION_PTHREADS -I. -I../lib -I../parlib -D_SION_LINUX -P -E -I ../lib sion_f90_ompi.F90 > sion_f90_ompi.f90 >cc1plus: warning: command-line option â-fallow-argument-mismatchâ is valid for Fortran but not for C++ >x86_64-pc-linux-gnu-gfortran -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -m64 -fPIC -m64 -fPIC -m64 -fPIC -c sion_f77.f >gfortran -m64 -ffree-form -fPIC -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -DSION_PTHREADS -c sion_f90.f90 >sion_f77_mpi.f:111:35: > > 79 | CALL FSION_COLL_FWRITE_MPI(DATA,SIZE,NITEMS,SID,RC) > | 2 >...... > 111 | CALL FSION_COLL_FWRITE_MPI(DATA,SIZE,NITEMS,SID,RC) > | 1 >Warning: Type mismatch between actual argument at (1) and actual argument at (2) (CHARACTER(1)/INTEGER(4)). >sion_f77_mpi.f:127:34: > > 94 | CALL FSION_COLL_FREAD_MPI(DATA,SIZE,NITEMS,SID,RC) > | 2 >...... > 127 | CALL FSION_COLL_FREAD_MPI(DATA,SIZE,NITEMS,SID,RC) > | 1 >Warning: Type mismatch between actual argument at (1) and actual argument at (2) (CHARACTER(1)/INTEGER(4)). >sion_f90.f90:866:23: > > 866 | call fsion_fread_c(data,size,nitems,sid,rc) > | 1 >...... > 878 | call fsion_fread_c(data,size,nitems,sid,rc) > | 2 >Warning: Type mismatch between actual argument at (1) and actual argument at (2) (LOGICAL(4)/CHARACTER(*)). >sion_f90.f90:780:22: > > 780 | call fsion_read_c(data,size,nitems,sid,rc) > | 1 >...... > 792 | call fsion_read_c(data,size,nitems,sid,rc) > | 2 >Warning: Type mismatch between actual argument at (1) and actual argument at (2) (LOGICAL(4)/CHARACTER(*)). >sion_f90.f90:694:24: > > 694 | call fsion_fwrite_c(data,size,nitems,sid,rc) > | 1 >...... > 706 | call fsion_fwrite_c(data,size,nitems,sid,rc) > | 2 >Warning: Type mismatch between actual argument at (1) and actual argument at (2) (LOGICAL(4)/CHARACTER(*)). >sion_f90.f90:608:23: > > 608 | call fsion_write_c(data,size,nitems,sid,rc) > | 1 >...... > 620 | call fsion_write_c(data,size,nitems,sid,rc) > | 2 >Warning: Type mismatch between actual argument at (1) and actual argument at (2) (LOGICAL(4)/CHARACTER(*)). >sion_f90.f90:521:22: > > 521 | call fsion_swap_c(target,source,size,n,do_swap,rc) > | 1 >...... > 534 | call fsion_swap_c(target,source,size,n,do_swap,rc) > | 2 >Warning: Type mismatch between actual argument at (1) and actual argument at (2) (LOGICAL(4)/CHARACTER(*)). >sion_f77.f:416:25: > > 354 | CALL FSION_WRITE(DATA,SIZE,NITEMS,SID,RC) > | 2 >...... > 416 | CALL FSION_WRITE(DATA,SIZE,NITEMS,SID,RC) > | 1 >Warning: Type mismatch between actual argument at (1) and actual argument at (2) (CHARACTER(1)/INTEGER(4)). >sion_f77.f:431:26: > > 369 | CALL FSION_FWRITE(DATA,SIZE,NITEMS,SID,RC) > | 2 >...... > 431 | CALL FSION_FWRITE(DATA,SIZE,NITEMS,SID,RC) > | 1 >Warning: Type mismatch between actual argument at (1) and actual argument at (2) (CHARACTER(1)/INTEGER(4)). >sion_f77.f:446:24: > > 384 | CALL FSION_READ(DATA,SIZE,NITEMS,SID,RC) > | 2 >...... > 446 | CALL FSION_READ(DATA,SIZE,NITEMS,SID,RC) > | 1 >Warning: Type mismatch between actual argument at (1) and actual argument at (2) (CHARACTER(1)/INTEGER(4)). >sion_f77.f:461:25: > > 399 | CALL FSION_FREAD(DATA,SIZE,NITEMS,SID,RC) > | 2 >...... > 461 | CALL FSION_FREAD(DATA,SIZE,NITEMS,SID,RC) > | 1 >Warning: Type mismatch between actual argument at (1) and actual argument at (2) (CHARACTER(1)/INTEGER(4)). >ar -rcs libsionmpi_f77_64.a sion_f77_mpi.o sion_fortran_mpi.o sion_fortran_writeread_mpi_f77.o sion_f77_ompi.o sion_fortran_ompi.o >*** libsionmpi_f77_64.a built >ar -rcs libsionser_f77_64.a sion_f77.o sion_fortran.o sion_fortran_writeread_f77.o sion_f77_omp.o sion_fortran_omp.o >gfortran -m64 -ffree-form -fPIC -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -DSION_PTHREADS -c sion_f90_omp.f90 >OMPI_FC="gfortran" mpif90 -m64 -ffree-form -fPIC -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -DSION_PTHREADS -c sion_f90_mpi.f90 >OMPI_FC="gfortran" mpif90 -m64 -ffree-form -fPIC -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -DSION_PTHREADS -c sion_f90_ompi.f90 >*** libsionser_f77_64.a built >sion_f90_mpi.f90:257:32: > > 257 | call fsion_coll_fread_mpi_c(data,size,nitems,sid,rc) > | 1 >...... > 270 | call fsion_coll_fread_mpi_c(data,size,nitems,sid,rc) > | 2 >Warning: Type mismatch between actual argument at (1) and actual argument at (2) (LOGICAL(4)/CHARACTER(*)). >sion_f90_mpi.f90:164:33: > > 164 | call fsion_coll_fwrite_mpi_c(data,size,nitems,sid,rc) > | 1 >...... > 177 | call fsion_coll_fwrite_mpi_c(data,size,nitems,sid,rc) > | 2 >Warning: Type mismatch between actual argument at (1) and actual argument at (2) (LOGICAL(4)/CHARACTER(*)). >ar -rcs libsionser_f90_64.a sion_f90.o sion_fortran.o sion_fortran_writeread_f90.o sion_f90_omp.o sion_fortran_omp.o >*** libsionser_f90_64.a built >ar -rcs libsionmpi_f90_64.a sion_f90_mpi.o sion_fortran_mpi.o sion_fortran_writeread_mpi_f90.o sion_f90_ompi.o sion_fortran_ompi.o >*** libsionmpi_f90_64.a built >make[3]: Leaving directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/fortraninterface' >++++++++++ PARUTILS +++++++++++++++++++++++++++ >make[3]: Entering directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/parutils' >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -DSION_MPI -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -I../parlib -D_SION_LINUX -DGIT_REV='"e7c4192"' -c partest.c >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -m64 -DSION_MPI -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -I../parlib -D_SION_LINUX -DGIT_REV='"e7c4192"' -c partest_split_comm.c >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -DSION_MPI -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -I../parlib -D_SION_LINUX -DGIT_REV='"e7c4192"' -c partest_sionfile.c >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -DSION_MPI -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -I../parlib -D_SION_LINUX -DGIT_REV='"e7c4192"' -c partest_mpiio.c >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -DSION_MPI -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -I../parlib -D_SION_LINUX -DGIT_REV='"e7c4192"' -c partest_tasklocalfile.c >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -DSION_MPI -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -I../parlib -D_SION_LINUX -DGIT_REV='"e7c4192"' -c partest_util.c >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -DSION_MPI -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -I../parlib -D_SION_LINUX -DGIT_REV='"e7c4192"' -c partest_opts.c >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -DSION_OMPI -fopenmp -DSION_OMP -fopenmp -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -I../parlib -D_SION_LINUX -DGIT_REV='"e7c4192"' -c ompi_partest.c >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -DSION_OMPI -fopenmp -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -I../parlib -D_SION_LINUX -DGIT_REV='"e7c4192"' -c ompi_partest_sionfile.c >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -DSION_OMP -fopenmp -DSION_OMPI -fopenmp -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -DSION_PTHREADS -I. -I../lib -I../parlib -D_SION_LINUX -DGIT_REV='"e7c4192"' -c omp_partest_sionfile.c >OMPI_FC="gfortran" mpif90 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -m64 -fPIC -m64 -fPIC -m64 -fPIC -c fpartest.F90 >fpartest.F90:151:23: > > 150 | call MPI_Bcast(filename,MAXCHARLEN,MPI_CHARACTER,0,MPI_COMM_WORLD, ierr) > | 2 > 151 | call MPI_Bcast(bufsize,1,MPI_INTEGER4,0,MPI_COMM_WORLD, ierr) > | 1 >Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(8)/CHARACTER(*)). >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -o partest partest.o partest_split_comm.o partest_sionfile.o partest_mpiio.o partest_tasklocalfile.o partest_util.o partest_opts.o -L../lib -lsionser_64 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -m64 -m64 -m64 -L../parlib -lsionmpi_64 -L../lib -lsiongen_64 -L../lib -lsioncom_64 -lsioncom_64_lock_pthreads >OMPI_CC="x86_64-pc-linux-gnu-gcc" mpicc -o ompi_partest ompi_partest.o ompi_partest_sionfile.o omp_partest_sionfile.o partest_opts.o -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -m64 -m64 -m64 -L../parlib -lsionompi_64 -L../lib -lsiongen_64 -L../lib -lsioncom_64 -lsioncom_64_lock_pthreads -fopenmp -L../parlib -lsionomp_64 -L../lib -lsionser_64 >OMPI_FC="gfortran" mpif90 -o fpartest fpartest.o -L../fortraninterface -lsionmpi_f77_64 -lsionser_f77_64 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -m64 -m64 -m64 -L../parlib -lsionmpi_64 -L../lib -lsiongen_64 -L../lib -lsionser_64 -lsioncom_64 -lsioncom_64_lock_pthreads >make[3]: Leaving directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/parutils' >make[2]: Leaving directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build' >make[1]: Leaving directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi' >>>> Source compiled. >>>> Test phase: sys-cluster/sionlib-1.7.6-r1 >make -j48 test >make[1]: Entering directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi' >cd build; make -f RealMakefile all >make[2]: Entering directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build' >++++++++++ LIBS +++++++++++++++++++++++++++++++ >make[3]: Entering directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/lib' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/lib' >++++++++++ PARLIBS ++++++++++++++++++++++++++++ >make[3]: Entering directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/parlib' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/parlib' >++++++++++ UTILS ++++++++++++++++++++++++++++++ >make[3]: Entering directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/utils' >make[3]: Leaving directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/utils' >++++++++++ CPPINTERFACE +++++++++++++++++++++++ >make[3]: Entering directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/cppinterface' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/cppinterface' >++++++++++ FORTRANINTERFACE +++++++++++++++++++ >make[3]: Entering directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/fortraninterface' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/fortraninterface' >++++++++++ PARUTILS +++++++++++++++++++++++++++ >make[3]: Entering directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/parutils' >make[3]: Leaving directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/parutils' >make[2]: Leaving directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build' > >++++++++++++++++++++++++++++++++++++++++++++++++++++++ >+ run Tests + >++++++++++++++++++++++++++++++++++++++++++++++++++++++ > >cd build; make -f RealMakefile test >make[2]: Entering directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build' >++++++++++ LIBS +++++++++++++++++++++++++++++++ >make[3]: Entering directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/lib' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/lib' >++++++++++ Test Serial ++++++++++++++++++++++++ >make[3]: Entering directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/test/serial' >x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=x86-64 -frecord-gcc-switches -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -std=c99 -m64 -fPIC -g -I. -I../../lib -I../../parlib -D_SION_LINUX test_seropn_1.c >Makefile:16: *** Recursive variable 'CXXFLAGS' references itself (eventually). Stop. >make[3]: Leaving directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build/test/serial' >make[2]: *** [RealMakefile:93: all-test-ser] Error 2 >make[2]: Leaving directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi/build' >make[1]: *** [GNUmakefile:21: test] Error 2 >make[1]: Leaving directory '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib/build-linux-gomp-openmpi' >make: *** [Makefile:9: test] Error 2 > * ERROR: sys-cluster/sionlib-1.7.6-r1::guru failed (test phase): > * Make test failed. See above for details. > * > * Call stack: > * ebuild.sh, line 125: Called src_test > * environment, line 2819: Called default > * phase-functions.sh, line 855: Called default_src_test > * phase-functions.sh, line 884: Called __eapi0_src_test > * phase-helpers.sh, line 782: Called die > * The specific snippet of code: > * $emake_cmd ${internal_opts} test || \ > * die "Make test failed. See above for details." > * > * If you need support, post the output of `emerge --info '=sys-cluster/sionlib-1.7.6-r1::guru'`, > * the complete build log and the output of `emerge -pqv '=sys-cluster/sionlib-1.7.6-r1::guru'`. > * The complete build log is located at '/var/log/emerge-log/build/sys-cluster/sionlib-1.7.6-r1:20210427-234126.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/temp/environment'. > * Working directory: '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib' > * S: '/var/tmp/portage/sys-cluster/sionlib-1.7.6-r1/work/sionlib' >
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