build.log

build.log (text/plain), 6.27 KB, created by Agostino Sarubbo on 2021-03-15 07:47:47 UTC

 * Package:    sci-chemistry/autodock-4.2.6
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux openmp userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox test userpriv usersandbox


@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@
This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix;
This ebuild was merged at the following commit:
https://github.com/gentoo-mirror/gentoo/commit/7ae02a3a4446e69fe01160bab5cd68a8b575383f  (Sun Mar 14 23:51:17 UTC 2021)
@@@@@ END @@@@@



emerge --info:
Portage 3.0.17 (python 3.9.2-final-0, default/linux/amd64/17.1, gcc-10.2.0, glibc-2.32-r8, 5.4.0-1029-aws x86_64)
=================================================================
System uname: Linux-5.4.0-1029-aws-x86_64-Intel-R-_Xeon-R-_Platinum_8175M_CPU_@_2.50GHz-with-glibc2.32
KiB Mem:    64359964 total,  24355396 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Sun, 14 Mar 2021 23:51:16 +0000
sh bash 5.1_p4
ld GNU ld (Gentoo 2.35.2 p1) 2.35.2
app-shells/bash:          5.1_p4::gentoo
dev-lang/perl:            5.32.1::gentoo
dev-lang/python:          3.7.10::gentoo, 3.8.8::gentoo, 3.9.2::gentoo
dev-util/cmake:           3.19.6::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.7-r1::gentoo
sys-apps/openrc:          0.42.1-r1::gentoo
sys-apps/sandbox:         2.21::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.71::gentoo
sys-devel/automake:       1.16.3-r1::gentoo
sys-devel/binutils:       2.35.2::gentoo
sys-devel/gcc:            10.2.0-r5::gentoo
sys-devel/gcc-config:     2.4::gentoo
sys-devel/libtool:        2.4.6-r6::gentoo
sys-devel/make:           4.3::gentoo
sys-kernel/linux-headers: 5.11::gentoo (virtual/os-headers)
sys-libs/glibc:           2.32-r8::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-verify-metamanifest: yes
    sync-rsync-extra-opts: 
    sync-rsync-verify-jobs: 1
    sync-rsync-verify-max-age: 24

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* GPL-2"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color"
DISTDIR="/var/tmp/portage/sci-chemistry/autodock-4.2.6/distdir"
EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -k -b"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="C.UTF8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0"
MAKEOPTS="-j16"
PKGDIR="/root/.packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="acl amd64 berkdb bzip2 cli crypt dri elogind fortran gdbm iconv ipv6 jumbo-build libglvnd libtirpc multilib native-symlinks ncurses nls nptl openmp pam pcre readline seccomp split-usr ssl tcpd test unicode xattr zlib" ABI_X86="64" ELIBC="glibc" KERNEL="linux" USERLAND="GNU"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS





emerge history:



>>> Unpacking source...
>>> Unpacking autodocksuite-4.2.6-src.tar.gz to /var/tmp/portage/sci-chemistry/autodock-4.2.6/work
>>> Source unpacked in /var/tmp/portage/sci-chemistry/autodock-4.2.6/work
>>> Preparing source in /var/tmp/portage/sci-chemistry/autodock-4.2.6/work/src ...
 * Applying autodock-4.2.6-buildsystem.patch ...
 [ ok ]
 * Running eautoreconf in '/var/tmp/portage/sci-chemistry/autodock-4.2.6/work/src/autodock' ...
 * Running aclocal ...
 [ ok ]
 * Running autoconf --force ...
 [ ok ]
 * Running automake --add-missing --copy --foreign --force-missing ...
 [ !! ]

 * Failed Running automake !
 * 
 * Include in your bugreport the contents of:
 * 
 *   /var/tmp/portage/sci-chemistry/autodock-4.2.6/temp/automake.out

 * ERROR: sci-chemistry/autodock-4.2.6::gentoo failed (prepare phase):
 *   Failed Running automake !
 * 
 * Call stack:
 *     ebuild.sh, line  125:  Called src_prepare
 *   environment, line 1650:  Called eautoreconf
 *   environment, line  899:  Called eautomake
 *   environment, line  853:  Called autotools_run_tool 'automake' '--add-missing' '--copy' '--foreign' '--force-missing'
 *   environment, line  610:  Called die
 * The specific snippet of code:
 *           die "Failed Running $1 !";
 * 
 * If you need support, post the output of `emerge --info '=sci-chemistry/autodock-4.2.6::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-chemistry/autodock-4.2.6::gentoo'`.
 * The complete build log is located at '/var/log/emerge-log/build/sci-chemistry/autodock-4.2.6:20210315-005723.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/autodock-4.2.6/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/autodock-4.2.6/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-chemistry/autodock-4.2.6/work/src/autodock'
 * S: '/var/tmp/portage/sci-chemistry/autodock-4.2.6/work/src'