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Gentoo's Bugzilla – Attachment 688569 Details for
Bug 773262
sci-astronomy/cpl-7.0 - configure: error: Building with thread support requires a thread-safe libcfitsio! Please update your cfits
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sci-astronomy:cpl-7.0:20210227-005911.log
sci-astronomy:cpl-7.0:20210227-005911.log (text/plain), 13.48 KB, created by
Toralf Förster
on 2021-02-27 10:18:48 UTC
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Description:
sci-astronomy:cpl-7.0:20210227-005911.log
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Creator:
Toralf Förster
Created:
2021-02-27 10:18:48 UTC
Size:
13.48 KB
patch
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> * Package: sci-astronomy/cpl-7.0 > * Repository: gentoo > * Maintainer: sci-astronomy@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux threads userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox splitdebug userpriv usersandbox >>>> Unpacking source... >>>> Unpacking cpl-7.0.tar.gz to /var/tmp/portage/sci-astronomy/cpl-7.0/work >>>> Source unpacked in /var/tmp/portage/sci-astronomy/cpl-7.0/work >>>> Preparing source in /var/tmp/portage/sci-astronomy/cpl-7.0/work/cpl-7.0 ... > * Applying cpl-6.6.1-use-system-ltdl.patch ... >patching file configure.ac >Hunk #1 succeeded at 58 (offset -2 lines). >Hunk #2 succeeded at 130 (offset -2 lines). >patching file Makefile.am >Hunk #1 succeeded at 25 with fuzz 2. > [ ok ] > * Running eautoreconf in '/var/tmp/portage/sci-astronomy/cpl-7.0/work/cpl-7.0/libltdl' ... > * Running libtoolize --install --copy --force --ltdl --automake ... > [ ok ] > * Running aclocal -I ../m4 ... > [ ok ] > * Running autoconf --force ... > [ ok ] > * Running autoheader ... > [ ok ] > * Running automake --add-missing --copy --foreign --force-missing ... > [ ok ] > * Running eautoreconf in '/var/tmp/portage/sci-astronomy/cpl-7.0/work/cpl-7.0/libcext' ... > * Running libtoolize --install --copy --force --automake ... > [ ok ] > * Running aclocal -I m4 ... > [ ok ] > * Running autoconf --force ... > [ ok ] > * Running autoheader ... > [ ok ] > * Running automake --add-missing --copy --force-missing ... > [ ok ] > * Running eautoreconf in '/var/tmp/portage/sci-astronomy/cpl-7.0/work/cpl-7.0' ... > * Running libtoolize --install --copy --force --ltdl --automake ... > [ ok ] > * Running aclocal -I m4 ... > [ ok ] > * Running autoconf --force ... > [ ok ] > * Running autoheader ... > [ ok ] > * Running automake --add-missing --copy --force-missing ... > [ ok ] > * Running elibtoolize in: cpl-7.0/ > * Applying ppc64le/2.4.4 patch ... > * Running elibtoolize in: cpl-7.0/admin/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... > * Running elibtoolize in: cpl-7.0/libcext/ > * Applying ppc64le/2.4.4 patch ... > * Running elibtoolize in: cpl-7.0/libcext/admin/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... > * Running elibtoolize in: cpl-7.0/libltdl/ > * Applying ppc64le/2.4.4 patch ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-astronomy/cpl-7.0/work/cpl-7.0 ... > * econf: updating cpl-7.0/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating cpl-7.0/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating cpl-7.0/admin/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating cpl-7.0/admin/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating cpl-7.0/libcext/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating cpl-7.0/libcext/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating cpl-7.0/libcext/admin/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating cpl-7.0/libcext/admin/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating cpl-7.0/libltdl/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating cpl-7.0/libltdl/config.guess with /usr/share/gnuconfig/config.guess >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/cpl-7.0 --htmldir=/usr/share/doc/cpl-7.0/html --libdir=/usr/lib64 --disable-ltdl-install --without-included-ltdl --with-cfitsio=/usr --with-wcs=/usr --with-fftw=/usr --disable-maintainer-mode --disable-static --enable-threads --disable-gasgano >checking build system type... x86_64-pc-linux-gnu >checking for a BSD-compatible install... /usr/lib/portage/python3.8/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make supports nested variables... yes >checking whether to enable maintainer-specific portions of Makefiles... no >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes >checking whether make supports the include directive... yes (GNU style) >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking whether x86_64-pc-linux-gnu-gcc and cc understand -c and -o together... yes >checking for purify... no >checking whether x86_64-pc-linux-gnu-gcc supports -std=c99... yes >checking whether x86_64-pc-linux-gnu-gcc supports -fno-common... yes >checking whether debugging code should be created... no >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking whether strict compiler options should be used... no >checking whether profiling compiler options should be used... no >checking for doxygen... no >checking for latex... /usr/bin/latex >checking host system type... x86_64-pc-linux-gnu >checking how to print strings... printf >checking for a sed that does not truncate output... /bin/sed >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B >checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... no >checking for a working dd... /bin/dd >checking how to truncate binary pipes... /bin/dd bs=4096 count=1 >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... mt >checking if mt is a manifest tool... no >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking for shl_load... no >checking for shl_load in -ldld... no >checking for dlopen... no >checking for dlopen in -ldl... yes >checking whether a program can dlopen itself... yes >checking whether a statically linked program can dlopen itself... no >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking what extension is used for runtime loadable modules... .so >checking what variable specifies run-time module search path... LD_LIBRARY_PATH >checking for the default library search path... /lib /usr/lib /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0 /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/32 /usr/lib/gcc/x86_64-pc-linux-gnu/7.3.1 /usr/lib/gcc/x86_64-pc-linux-gnu/7.3.1/32 /usr/lib64/oprofile /usr/lib64/itcl4.2.0/ /usr/lib64/itk4.1.0/ /lib64 /usr/lib64 /usr/local/lib64 /lib /usr/lib /usr/local/lib /usr/lib64/oracle/client/lib64 /usr/lib/rust/lib /usr/lib64/ThePEG /usr/lib/llvm/11/lib64 /usr/lib/llvm/10/lib64 /usr/lib64/sidplay/builders /usr/lib/sidplay/builders /usr/games/lib64 /usr/games/lib /usr/lib64/fltk /usr/lib64/opencollada >checking for library containing dlopen... -ldl >checking for dlerror... yes >checking for shl_load... (cached) no >checking for shl_load in -ldld... (cached) no >checking for dld_link in -ldld... no >checking for _ prefix in compiled symbols... no >checking whether deplibs are loaded by dlopen... yes >checking for argz.h... yes >checking for error_t... yes >checking for argz_add... yes >checking for argz_append... yes >checking for argz_count... yes >checking for argz_create_sep... yes >checking for argz_insert... yes >checking for argz_next... yes >checking for argz_stringify... yes >checking if argz actually works... yes >checking whether libtool supports -dlopen/-dlpreopen... yes >checking for ltdl.h... yes >checking whether lt_dlinterface_register is declared... yes >checking for lt_dladvise_preload in -lltdl... yes >checking where to find libltdl headers... >checking where to find libltdl library... -lltdl >checking for unistd.h... (cached) yes >checking for dl.h... no >checking for sys/dl.h... no >checking for dld.h... no >checking for mach-o/dyld.h... no >checking for dirent.h... yes >checking for closedir... yes >checking for opendir... yes >checking for readdir... yes >checking for strlcat... no >checking for strlcpy... no >checking for Java Development Kit... /etc/java-config-2/current-system-vm, headers /etc/java-config-2/current-system-vm/include, /etc/java-config-2/current-system-vm/include/linux >checking for gasgano... no >checking for gasgano jar files... no >checking whether x86_64-pc-linux-gnu-gcc supports -pthread... yes >checking for pthread_create in -lpthread... yes >checking pthread.h usability... yes >checking pthread.h presence... yes >checking for pthread.h... yes >checking for the compiler option to support OpenMP... -fopenmp >checking whether thread support is available... yes >checking for library containing omp_get_num_threads... -lgomp >checking for socket in -lsocket... no >checking for inet_ntoa in -lnsl... yes >checking for special C compiler options needed for large files... no >checking for _FILE_OFFSET_BITS value needed for large files... no >checking for cfitsio... libraries /usr/lib64, headers /usr/include >checking whether cfitsio can be used... yes >checking for a cfitsio version >= 3.310... 3.490 >checking whether cfitsio provides fits_hdu_getoff()... yes >checking whether cfitsio provides fits_get_hduaddrll()... yes >checking whether cfitsio was compiled with thread support... no >configure: error: Building with thread support requires a thread-safe libcfitsio! Please update your cfitsio installation > >!!! Please attach the following file when seeking support: >!!! /var/tmp/portage/sci-astronomy/cpl-7.0/work/cpl-7.0/config.log > * ERROR: sci-astronomy/cpl-7.0::gentoo failed (configure phase): > * econf failed > * > * Call stack: > * ebuild.sh, line 125: Called src_configure > * environment, line 4276: Called econf '--disable-ltdl-install' '--without-included-ltdl' '--with-cfitsio=/usr' '--with-wcs=/usr' '--with-fftw=/usr' '--disable-maintainer-mode' '--disable-static' '--enable-threads' '--disable-gasgano' > * phase-helpers.sh, line 680: Called __helpers_die 'econf failed' > * isolated-functions.sh, line 112: Called die > * The specific snippet of code: > * die "$@" > * > * If you need support, post the output of `emerge --info '=sci-astronomy/cpl-7.0::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-astronomy/cpl-7.0::gentoo'`. >!!! When you file a bug report, please include the following information: >GENTOO_VM= CLASSPATH="" JAVA_HOME="/etc/java-config-2/current-system-vm" >JAVACFLAGS="" COMPILER="" >and of course, the output of emerge --info =cpl-7.0 > * The complete build log is located at '/var/log/portage/sci-astronomy:cpl-7.0:20210227-005911.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-astronomy/cpl-7.0/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-astronomy/cpl-7.0/temp/environment'. > * Working directory: '/var/tmp/portage/sci-astronomy/cpl-7.0/work/cpl-7.0' > * S: '/var/tmp/portage/sci-astronomy/cpl-7.0/work/cpl-7.0'
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