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Gentoo's Bugzilla – Attachment 687669 Details for
Bug 721060
sci-mathematics/petsc-3.13.0 with "sparse" flag failed in configure phase
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petsc-3.13.1:20210219-195522.log
petsc-3.13.1:20210219-195522.log (text/plain), 77.37 KB, created by
Bernd
on 2021-02-19 20:14:13 UTC
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hide
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Description:
petsc-3.13.1:20210219-195522.log
Filename:
MIME Type:
Creator:
Bernd
Created:
2021-02-19 20:14:13 UTC
Size:
77.37 KB
patch
obsolete
>[32;01m * [39;49;00mPackage: sci-mathematics/petsc-3.13.1 >[32;01m * [39;49;00mRepository: gentoo >[32;01m * [39;49;00mMaintainer: tamiko@gentoo.org sci-mathematics@gentoo.org >[32;01m * [39;49;00mUSE: X abi_x86_64 afterimage amd64 cxx doc elibc_glibc fftw fortran hdf5 hypre kernel_linux metis mpi mumps scotch sparse threads userland_GNU >[32;01m * [39;49;00mFEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox > [32;01m*[0m Using python3.8 to build >>>> Unpacking source... >>>> Unpacking petsc-3.13.1.tar.gz to /var/tmp/portage/sci-mathematics/petsc-3.13.1/work >>>> Source unpacked in /var/tmp/portage/sci-mathematics/petsc-3.13.1/work >>>> Preparing source in /var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1 ... > [32;01m*[0m Applying petsc-3.7.0-disable-rpath.patch ... >[A[122C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying petsc-3.13.0-fix_sandbox_violation.patch ... >[A[122C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying petsc-3.13.0-make_hypre_configure.patch ... >[A[122C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying petsc-3.13.0-do_not_run_mpiexec.patch ... >[A[122C [34;01m[ [32;01mok[34;01m ][0m >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1 ... >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64/petsc/lib64 scrollOutput=1 FFLAGS=-O2 -pipe -march=bdver2 -frecord-gcc-switches -fstack-protector-strong -fstack-check -fPIC CFLAGS=-O2 -pipe -march=bdver2 -frecord-gcc-switches -fstack-protector-strong -fstack-check -fPIC CXXFLAGS=-O2 -pipe -march=bdver2 -frecord-gcc-switches -fstack-protector-strong -fstack-check -fPIC LDFLAGS=-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 --prefix=/usr/lib64/petsc --with-shared-libraries --with-single-library --with-clanguage=cxx with-c-support=1 --with-petsc-arch=linux-gnu-cxx-opt --with-precision=double --with-gnu-compilers --with-blas-lapack-lib=-lblas -llapack --with-debugging=0 --with-mpi=1 --with-cc=mpicc --with-cxx=mpicxx --with-fortran=1 --with-fc=mpif77 --with-mpi-compilers=1 --with-scalar-type=real --with-windows-graphics=0 --with-matlab=0 --with-cmake:BOOL=1 --with-pthread=1 --with-afterimage=1 --with-afterimage-include=/usr/include/libAfterImage --with-afterimage-lib=-lAfterImage --with-hdf5 --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-suitesparse --with-superlu=0 --with-x --with-x11 --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib=[-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr] --with-scalapack=1 --with-scalapack-include=/usr/include/scalapack --with-scalapack-lib=-lscalapack --with-mumps=/usr/include --with-imagemagick=0 --with-python=0 --without-boost --with-fftw >=============================================================================== > Configuring PETSc to compile on your system >=============================================================================== >Bool >----------------------------------------------------------------------- >Warning! Incorrect argument type specified: -with-mumps=/usr/include - expecting type Bool. >----------------------------------------------------------------------- >TESTING: configureExternalPackagesDir from config.framework(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/framework.py:911) >TESTING: configureDebuggers from config.utilities.debuggers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/debuggers.py:21) >TESTING: configureDirectories from PETSc.options.petscdir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/petscdir.py:23) >TESTING: getDatafilespath from PETSc.options.dataFilesPath(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/dataFilesPath.py:29) >TESTING: configureGit from config.sourceControl(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/sourceControl.py:24) >TESTING: configureInstallationMethod from PETSc.options.petscclone(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/petscclone.py:20) >TESTING: setNativeArchitecture from PETSc.options.arch(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/arch.py:31) >TESTING: configureArchitecture from PETSc.options.arch(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/arch.py:43) >TESTING: setInstallDir from PETSc.options.installDir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/installDir.py:35) >TESTING: saveReconfigure from PETSc.options.installDir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/installDir.py:73) >TESTING: cleanConfDir from PETSc.options.installDir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/installDir.py:66) >TESTING: configureInstallDir from PETSc.options.installDir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/installDir.py:50) >TESTING: restoreReconfigure from PETSc.options.installDir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/installDir.py:86) >TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/externalpackagesdir.py:15) >TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/externalpackagesdir.py:22) >TESTING: configureCLanguage from PETSc.options.languages(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/languages.py:27) > =============================================================================== > WARNING -with-clanguage=C++ is a developer feature and is *not* required for regular usage of PETSc either from C or C++ > =============================================================================== > >TESTING: printEnvVariables from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1715) >TESTING: resetEnvCompilers from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1722) > =============================================================================== > ***** WARNING: FCFLAGS (set to -O2 -pipe -march=bdver2 -frecord-gcc-switches -fstack-protector-strong -fstack-check) found in environment variables - ignoring > use ./configure FCFLAGS=$FCFLAGS if you really want to use that value ****** > =============================================================================== > >TESTING: checkEnvCompilers from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1752) >TESTING: checkMPICompilerOverride from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1685) >TESTING: requireMpiLdPath from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1706) >TESTING: checkInitialFlags from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:460) >TESTING: checkCCompiler from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:630) >TESTING: checkCPreprocessor from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:669) >TESTING: checkCUDACompiler from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:705) >TESTING: checkCUDAPreprocessor from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:745) >TESTING: checkCxxCompiler from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:844) >TESTING: checkCxxPreprocessor from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:885) >TESTING: checkFortranCompiler from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:986) >TESTING: checkFortranPreprocessor from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1023) >TESTING: checkFortranComments from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1045) >TESTING: checkLargeFileIO from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1176) >TESTING: checkArchiver from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1275) >TESTING: checkSharedLinker from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1389) >TESTING: checkPIC from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1123) >TESTING: checkSharedLinkerPaths from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1501) >TESTING: checkLibC from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1531) >TESTING: checkDynamicLinker from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1577) >TESTING: output from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1626) >TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/sharedLibraries.py:36) >TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/sharedLibraries.py:52) >TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/sharedLibraries.py:97) >TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/sharedLibraries.py:103) >TESTING: configureIndexSize from PETSc.options.indexTypes(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/indexTypes.py:39) >TESTING: configureCompilerFlags from config.compilerFlags(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilerFlags.py:72) > =============================================================================== > ***** WARNING: Using default optimization CUDA flags -O > You might consider manually setting optimal optimization flags for your system with > CUDAOPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples > =============================================================================== > >TESTING: checkRestrict from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:150) >TESTING: checkCFormatting from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:405) >TESTING: checkCInline from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:120) >TESTING: checkDynamicLoadFlag from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:416) >TESTING: checkCLibraries from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:214) >TESTING: checkDependencyGenerationFlag from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:1363) >TESTING: checkC99Flag from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:1408) >TESTING: checkRestrict from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:150) >TESTING: checkCxxOptionalExtensions from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:435) >TESTING: checkCxxInline from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:135) >TESTING: checkCxxLibraries from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:547) >TESTING: checkCxxDialect from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:463) >TESTING: checkFortranNameMangling from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:854) >TESTING: checkFortranNameManglingDouble from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:892) >TESTING: checkFortranLibraries from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:902) >TESTING: checkFortranLinkingCxx from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:1328) >TESTING: setupFrameworkCompilers from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:1473) >TESTING: configureClosure from config.utilities.closure(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/closure.py:17) >TESTING: checkFortranTypeSizes from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:56) >TESTING: checkFortranPreprocessor from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:73) >TESTING: checkFortranDefineCompilerOption from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:96) >TESTING: checkFortran90 from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:146) >TESTING: checkFortran90FreeForm from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:162) >TESTING: checkFortran2003 from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:176) >TESTING: checkFortran90Array from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:211) >TESTING: checkFortran90AssumedType from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:298) >TESTING: checkFortranModuleInclude from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:303) >TESTING: checkFortranModuleOutput from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:369) >TESTING: checkFortranTypeStar from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:135) >TESTING: checkFortranTypeInitialize from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:125) >TESTING: configureFortranFlush from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:116) >TESTING: checkDependencyGenerationFlag from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:414) >TESTING: checkStdC from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:105) >TESTING: checkStat from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:138) >TESTING: checkSysWait from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:173) >TESTING: checkTime from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:195) >TESTING: checkMath from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:201) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: checkRecursiveMacros from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:216) >TESTING: configureCacheDetails from config.utilities.cacheDetails(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/cacheDetails.py:78) >TESTING: check_struct_sigaction from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:43) >TESTING: check__int64 from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:49) >TESTING: checkSizeTypes from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:55) >TESTING: checkFileTypes from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:65) >TESTING: checkIntegerTypes from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:60) >TESTING: checkPID from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:71) >TESTING: checkUID from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:75) >TESTING: checkC99Complex from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:82) >TESTING: checkCxxComplex from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:93) >TESTING: checkConst from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:104) >TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160) >TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160) >TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160) >TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160) >TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160) >TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160) >TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160) >TESTING: checkVisibility from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:194) >TESTING: configureMemAlign from PETSc.options.memAlign(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/memAlign.py:29) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: checkMath from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:264) >TESTING: checkMathErf from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:283) >TESTING: checkMathTgamma from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:292) >TESTING: checkMathLgamma from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:301) >TESTING: checkMathFenv from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:314) >TESTING: checkMathLog2 from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:322) >TESTING: checkRealtime from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:331) >TESTING: checkDynamic from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:347) >TESTING: configureLibraryOptions from PETSc.options.libraryOptions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/libraryOptions.py:37) >TESTING: configureISColorValueType from PETSc.options.libraryOptions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/libraryOptions.py:95) >TESTING: checkSysinfo from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:106) >TESTING: checkVPrintf from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:125) >TESTING: checkVFPrintf from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:131) >TESTING: checkVSNPrintf from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:137) >TESTING: checkNanosleep from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:167) >TESTING: checkMemmove from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:173) >TESTING: checkSignalHandlerType from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:143) >TESTING: checkFreeReturnType from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:153) >TESTING: checkVariableArgumentLists from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:159) >TESTING: checkClassify from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:85) >TESTING: checkMmap from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:179) >TESTING: configureMemorySize from config.utilities.getResidentSetSize(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/getResidentSetSize.py:31) >TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/fortranCommandLine.py:27) >TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/featureTestMacros.py:13) >TESTING: configureMissingUtypeTypedefs from config.utilities.missing(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/missing.py:55) >TESTING: configureMissingFunctions from config.utilities.missing(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/missing.py:61) >TESTING: configureMissingSignals from config.utilities.missing(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/missing.py:79) >TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/missing.py:96) >TESTING: configureMissingSrandPrototype from config.utilities.missing(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/missing.py:121) >TESTING: configureFPTrap from config.utilities.FPTrap(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/FPTrap.py:27) >TESTING: configureScalarType from PETSc.options.scalarTypes(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/scalarTypes.py:40) >TESTING: configurePrecision from PETSc.options.scalarTypes(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/scalarTypes.py:81) >TESTING: configureMkdir from config.programs(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/programs.py:22) >TESTING: configureAutoreconf from config.programs(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/programs.py:44) >TESTING: configurePrograms from config.programs(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/programs.py:71) >TESTING: configureMake from config.packages.make(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/make.py:87) >TESTING: setupGNUMake from config.packages.make(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/make.py:121) >TESTING: configureMakeNP from config.packages.make(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/make.py:168) >TESTING: alternateConfigureLibrary from config.packages.OpenMPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.MPICH(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: checkDependencies from config.packages.MPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843) >TESTING: configureLibrary from config.packages.MPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/MPI.py:600) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: checkMPIDistro from config.packages.MPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/MPI.py:461) >TESTING: configureMPI2 from config.packages.MPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/MPI.py:236) >TESTING: configureMPI3 from config.packages.MPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/MPI.py:281) >TESTING: configureMPIEXEC from config.packages.MPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/MPI.py:175) > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl >TESTING: configureMPITypes from config.packages.MPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/MPI.py:328) > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl > [31;01m*[0m [31;01mACCESS DENIED[0m: open_wr: /dev/nvidiactl >TESTING: SGIMPICheck from config.packages.MPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/MPI.py:389) >TESTING: CxxMPICheck from config.packages.MPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/MPI.py:399) >TESTING: FortranMPICheck from config.packages.MPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/MPI.py:415) >TESTING: configureIO from config.packages.MPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/MPI.py:437) >TESTING: findMPIInc from config.packages.MPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/MPI.py:541) >TESTING: PetscArchMPICheck from config.packages.MPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/MPI.py:575) >TESTING: checkVersion from config.packages.MPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:992) >TESTING: checkSharedLibrary from config.packages.MPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:926) >TESTING: alternateConfigureLibrary from config.packages.zstd(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.yaml(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: configureLibrary from config.packages.valgrind(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:868) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: alternateConfigureLibrary from config.packages.ssl(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.sprng(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.revolve(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.radau5(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.pami(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.opengles(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.opencl(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.muparser(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.petsc4py(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/petsc4py.py:97) >TESTING: alternateConfigureLibrary from config.packages.mpi4py(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/mpi4py.py:74) >TESTING: alternateConfigureLibrary from config.packages.mpe(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.memkind(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.libmesh(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/libmesh.py:76) >TESTING: alternateConfigureLibrary from config.packages.moose(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.libjpeg(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.libceed(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.slepc(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/slepc.py:88) >TESTING: alternateConfigureLibrary from config.packages.gmp(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.mpfr(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.giflib(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.egads(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.ctetgen(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.concurrencykit(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: locateC2html from config.packages.c2html(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/c2html.py:33) >TESTING: alternateConfigureLibrary from config.packages.boost(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.silo(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.Random123(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.PARTY(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.Matlab(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.Mathematica(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: checkDependencies from config.packages.regex(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843) >TESTING: configureLibrary from config.packages.regex(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:868) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: checkVersion from config.packages.regex(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:992) >TESTING: checkSharedLibrary from config.packages.regex(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:926) >TESTING: alternateConfigureLibrary from config.packages.opengl(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.glut(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.CoDiPack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.adblaslapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.cuda(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.ADOLC(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: locateCMake from config.packages.cmake(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/cmake.py:42) >TESTING: alternateConfigureLibrary from config.packages.googletest(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.unittestcpp(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.eigen(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.szlib(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.zlib(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.tetgen(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.tchem(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.saws(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.libpng(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.combblas(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.metis(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.pragmatic(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.parmetis(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.Chaco(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: checkDependencies from config.packages.hdf5(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843) >TESTING: configureLibrary from config.packages.hdf5(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/hdf5.py:83) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: checkVersion from config.packages.hdf5(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:992) >TESTING: checkSharedLibrary from config.packages.hdf5(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:926) >TESTING: alternateConfigureLibrary from config.packages.med(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.cgns(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.ascem-io(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.pflotran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.alquimia(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.SAMRAI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.ADIOS2(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.pnetcdf(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.netcdf(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.exodusii(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.fblaslapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: checkDependencies from config.packages.X(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843) >TESTING: configureLibrary from config.packages.X(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:868) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: checkVersion from config.packages.X(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:992) >TESTING: checkSharedLibrary from config.packages.X(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:926) >TESTING: alternateConfigureLibrary from config.packages.Triangle(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.GLVis(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.hwloc(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: checkDependencies from config.packages.pthread(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843) >TESTING: configureLibrary from config.packages.pthread(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/pthread.py:20) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: checkVersion from config.packages.pthread(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:992) >TESTING: checkSharedLibrary from config.packages.pthread(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:926) >TESTING: checkDependencies from config.packages.PTScotch(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843) >TESTING: configureLibrary from config.packages.PTScotch(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:868) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: checkVersion from config.packages.PTScotch(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:992) >TESTING: checkSharedLibrary from config.packages.PTScotch(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:926) >TESTING: alternateConfigureLibrary from config.packages.Zoltan(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.ADIOS(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.openmp(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.viennacl(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.ColPack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.openblas(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.blis(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: checkDependencies from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843) >TESTING: configureLibrary from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:447) >TESTING: checkLib from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:107) >TESTING: checkMKL from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:518) >TESTING: checkESSL from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:556) >TESTING: checkPESSL from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:564) >TESTING: checkMissing from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:589) >TESTING: checklsame from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:605) >TESTING: checkRuntimeIssues from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:664) >TESTING: checkVersion from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:992) >TESTING: checkSharedLibrary from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:926) >TESTING: alternateConfigureLibrary from config.packages.sundials(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.spai(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.pARMS(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.p4est(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: checkDependencies from config.packages.mkl_sparse_optimize(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843) >TESTING: configureLibrary from config.packages.mkl_sparse_optimize(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/mkl_sparse_optimize.py:48) >TESTING: checkVersion from config.packages.mkl_sparse_optimize(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:992) >TESTING: checkSharedLibrary from config.packages.mkl_sparse_optimize(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:926) >TESTING: checkDependencies from config.packages.mkl_sparse(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843) >TESTING: configureLibrary from config.packages.mkl_sparse(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/mkl_sparse.py:21) >TESTING: checkVersion from config.packages.mkl_sparse(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:992) >TESTING: checkSharedLibrary from config.packages.mkl_sparse(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:926) >TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.hpddm(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/hpddm.py:120) >TESTING: checkDependencies from config.packages.fftw(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843) >TESTING: configureLibrary from config.packages.fftw(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:868) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: checkVersion from config.packages.fftw(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:992) >TESTING: checkSharedLibrary from config.packages.fftw(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:926) >TESTING: alternateConfigureLibrary from config.packages.elemental(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.ml(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.mkl_pardiso(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.SuperLU_DIST(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.SuperLU(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: checkDependencies from config.packages.SuiteSparse(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843) >TESTING: configureLibrary from config.packages.SuiteSparse(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:868) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: checkVersion from config.packages.SuiteSparse(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:992) >******************************************************************************* > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): >------------------------------------------------------------------------------- >suitesparse version is 5.4.0 this version of PETSc needs at least 5.6.0 >Suggest using --download-suitesparse for a compatible SuiteSparse >******************************************************************************* > > [31;01m*[0m ERROR: sci-mathematics/petsc-3.13.1::gentoo failed (configure phase): > [31;01m*[0m econf failed > [31;01m*[0m > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 125: Called src_configure > [31;01m*[0m environment, line 2845: Called econf 'scrollOutput=1' 'FFLAGS=-O2 -pipe -march=bdver2 -frecord-gcc-switches -fstack-protector-strong -fstack-check -fPIC' 'CFLAGS=-O2 -pipe -march=bdver2 -frecord-gcc-switches -fstack-protector-strong -fstack-check -fPIC' 'CXXFLAGS=-O2 -pipe -march=bdver2 -frecord-gcc-switches -fstack-protector-strong -fstack-check -fPIC' 'LDFLAGS=-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0' '--prefix=/usr/lib64/petsc' '--with-shared-libraries' '--with-single-library' '--with-clanguage=cxx' 'with-c-support=1' '--with-petsc-arch=linux-gnu-cxx-opt' '--with-precision=double' '--with-gnu-compilers' '--with-blas-lapack-lib=-lblas -llapack' '--with-debugging=0' '--with-mpi=1' '--with-cc=mpicc' '--with-cxx=mpicxx' '--with-fortran=1' '--with-fc=mpif77' '--with-mpi-compilers=1' '--with-scalar-type=real' '--with-windows-graphics=0' '--with-matlab=0' '--with-cmake:BOOL=1' '--with-pthread=1' '--with-afterimage=1' '--with-afterimage-include=/usr/include/libAfterImage' '--with-afterimage-lib=-lAfterImage' '--with-hdf5' '--with-hypre=1' '--with-hypre-include=/usr/include/hypre' '--with-hypre-lib=-lHYPRE' '--with-suitesparse' '--with-superlu=0' '--with-x' '--with-x11' '--with-ptscotch=1' '--with-ptscotch-include=/usr/include/scotch' '--with-ptscotch-lib=[-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]' '--with-scalapack=1' '--with-scalapack-include=/usr/include/scalapack' '--with-scalapack-lib=-lscalapack' '--with-mumps=/usr/include' '--with-imagemagick=0' '--with-python=0' '--without-boost' '--with-fftw' > [31;01m*[0m phase-helpers.sh, line 680: Called __helpers_die 'econf failed' > [31;01m*[0m isolated-functions.sh, line 112: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m die "$@" > [31;01m*[0m > [31;01m*[0m If you need support, post the output of `emerge --info '=sci-mathematics/petsc-3.13.1::gentoo'`, > [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-mathematics/petsc-3.13.1::gentoo'`. > [31;01m*[0m The complete build log is located at '/var/log/portage/build/sci-mathematics/petsc-3.13.1:20210219-195522.log'. > [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/environment'. > [31;01m*[0m Working directory: '/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1' > [31;01m*[0m S: '/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1' > [31;01m*[0m --------------------------- ACCESS VIOLATION SUMMARY --------------------------- > [31;01m*[0m LOG FILE: "/var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/sandbox.log" > [31;01m*[0m >VERSION 1.0 >FORMAT: F - Function called >FORMAT: S - Access Status >FORMAT: P - Path as passed to function >FORMAT: A - Absolute Path (not canonical) >FORMAT: R - Canonical Path >FORMAT: C - Command Line > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > >F: open_wr >S: deny >P: /dev/nvidiactl >A: /dev/nvidiactl >R: /dev/nvidiactl >C: mpiexec --oversubscribe -n 1 /var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/petsc-etts8i1v/config.packages.MPI/conftest > [31;01m*[0m --------------------------------------------------------------------------------
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