dev-perl:go-db-perl-0.04-r1:20201126-185511.log

dev-perl:go-db-perl-0.04-r1:20201126-185511.log (text/plain), 20.05 KB, created by Toralf Förster on 2020-11-26 19:04:34 UTC

 * Package:    dev-perl/go-db-perl-0.04-r1
 * Repository: science
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking go-db-perl-0.04.tar.gz to /var/tmp/portage/dev-perl/go-db-perl-0.04-r1/work
>>> Source unpacked in /var/tmp/portage/dev-perl/go-db-perl-0.04-r1/work
>>> Preparing source in /var/tmp/portage/dev-perl/go-db-perl-0.04-r1/work/go-db-perl-0.04 ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/dev-perl/go-db-perl-0.04-r1/work/go-db-perl-0.04 ...
 * Using ExtUtils::MakeMaker
 * perl Makefile.PL PREFIX=/usr INSTALLDIRS=vendor INSTALLMAN3DIR=none DESTDIR=/var/tmp/portage/dev-perl/go-db-perl-0.04-r1/image

 ** WARNING **

You do not have the environment variable GO_ROOT set. This is required
for building the database, so that the system known where the XSL
files live.

You should set this to wherever your go-dev distribution lives; eg

  setenv GO_ROOT /go-dev/

If you are having problems installing XML::LibXSLT, please consult

  http://www.godatabase.org/dev/xml/doc/xml-doc.html


go-db-perl: Gene Ontology Database API

Online documentation - http://www.godatabase.org/dev

Local documentation  - see 
                         go-dev/go-db-perl/doc/go-db-perl-doc.html

In order to test and install the API, you need database creation
privileges on a mysql database server. this is so that I can build a
few test databases to check everything is working. if you dont have
network access to any nearby servers, consider installing mysql
locally - see www.mysql.org

you will also need read access to a fully populated GO database. You can use
the main GO one or populate your own from the exports here:

http://www.godatabase.org/dev/database


mysql server address [localhost]:
name of readonly populated GO database[go]:
name of dbuser (optional)[]:
db password (optional)[]:
 ** WARNING **

You do not have the environment variable GO_ROOT set; you should
set this to wherever you have the go-dev repository checked out
(this should be the directory one above this one)

Unparsable version '0.0/Carp' for prerequisite Carp treated as 0 at /usr/lib64/perl5/5.30.3/CPAN/Meta/Requirements.pm line 140.
Unparsable version '0.0/Stag' for prerequisite Data::Stag treated as 0 at /usr/lib64/perl5/5.30.3/CPAN/Meta/Requirements.pm line 140.
Unparsable version '0.0/bioperl' for prerequisite Bio::Seq treated as 0 at /usr/lib64/perl5/5.30.3/CPAN/Meta/Requirements.pm line 140.
Unparsable version '0.0/Scalar' for prerequisite Set::Scalar treated as 0 at /usr/lib64/perl5/5.30.3/CPAN/Meta/Requirements.pm line 140.
Unparsable version '0.0/DBI for DbUtils::SqlWrapper' for prerequisite DBI treated as 0 at /usr/lib64/perl5/5.30.3/CPAN/Meta/Requirements.pm line 140.
Unparsable version '0.0/MD5' for prerequisite Digest::MD5 treated as 0 at /usr/lib64/perl5/5.30.3/CPAN/Meta/Requirements.pm line 140.
Checking if your kit is complete...
Warning: the following files are missing in your kit:
	META.yml
Please inform the author.
Warning: prerequisite Bio::Seq 0 not found.
Generating a Unix-style Makefile
Writing Makefile for GO
Writing MYMETA.yml and MYMETA.json
>>> Source configured.
>>> Compiling source in /var/tmp/portage/dev-perl/go-db-perl-0.04-r1/work/go-db-perl-0.04 ...
 * emake OTHERLDFLAGS=-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0
make -j1 'OTHERLDFLAGS=-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0' 
cp GO/Handlers/genericdb.pm blib/lib/GO/Handlers/genericdb.pm
cp GO/AppHandles/AppHandleChadoSqlImpl.pm blib/lib/GO/AppHandles/AppHandleChadoSqlImpl.pm
cp GO/Reasoner.pm blib/lib/GO/Reasoner.pm
cp GO/TestHarness.pm blib/lib/GO/TestHarness.pm
cp GO/AppHandles/AppHandleAbstractSqlImpl.pm blib/lib/GO/AppHandles/AppHandleAbstractSqlImpl.pm
cp GO/Handlers/db.pm blib/lib/GO/Handlers/db.pm
cp GO/Admin.pm blib/lib/GO/Admin.pm
cp GO/DebugUtils.pm blib/lib/GO/DebugUtils.pm
cp GO/AppHandles/AppHandleSqlImpl.pm blib/lib/GO/AppHandles/AppHandleSqlImpl.pm
cp GO.pm blib/lib/GO.pm
cp GO/SqlWrapper.pm blib/lib/GO/SqlWrapper.pm
cp GO/AppHandles/AppHandleCachingImpl.pm blib/lib/GO/AppHandles/AppHandleCachingImpl.pm
cp GO/AppHandle.pm blib/lib/GO/AppHandle.pm
cp GO/AppHandles/AppHandleCWrapper.pm blib/lib/GO/AppHandles/AppHandleCWrapper.pm
cp GO/Tango.pm blib/lib/GO/Tango.pm
cp GO/AppHandles/AppHandlePgImpl.pm blib/lib/GO/AppHandles/AppHandlePgImpl.pm
cp GO/Handlers/godb.pm blib/lib/GO/Handlers/godb.pm
>>> Source compiled.
>>> Test phase [not enabled]: dev-perl/go-db-perl-0.04-r1

>>> Install dev-perl/go-db-perl-0.04-r1 into /var/tmp/portage/dev-perl/go-db-perl-0.04-r1/image
make -j1 pure_install 
Installing /var/tmp/portage/dev-perl/go-db-perl-0.04-r1/image/usr/lib64/perl5/vendor_perl/5.30.3/GO.pm
Installing /var/tmp/portage/dev-perl/go-db-perl-0.04-r1/image/usr/lib64/perl5/vendor_perl/5.30.3/GO/Tango.pm
Installing /var/tmp/portage/dev-perl/go-db-perl-0.04-r1/image/usr/lib64/perl5/vendor_perl/5.30.3/GO/AppHandle.pm
Installing /var/tmp/portage/dev-perl/go-db-perl-0.04-r1/image/usr/lib64/perl5/vendor_perl/5.30.3/GO/SqlWrapper.pm
Installing /var/tmp/portage/dev-perl/go-db-perl-0.04-r1/image/usr/lib64/perl5/vendor_perl/5.30.3/GO/DebugUtils.pm
Installing /var/tmp/portage/dev-perl/go-db-perl-0.04-r1/image/usr/lib64/perl5/vendor_perl/5.30.3/GO/Admin.pm
Installing /var/tmp/portage/dev-perl/go-db-perl-0.04-r1/image/usr/lib64/perl5/vendor_perl/5.30.3/GO/TestHarness.pm
Installing /var/tmp/portage/dev-perl/go-db-perl-0.04-r1/image/usr/lib64/perl5/vendor_perl/5.30.3/GO/Reasoner.pm
Installing /var/tmp/portage/dev-perl/go-db-perl-0.04-r1/image/usr/lib64/perl5/vendor_perl/5.30.3/GO/AppHandles/AppHandlePgImpl.pm
Installing /var/tmp/portage/dev-perl/go-db-perl-0.04-r1/image/usr/lib64/perl5/vendor_perl/5.30.3/GO/AppHandles/AppHandleCWrapper.pm
Installing /var/tmp/portage/dev-perl/go-db-perl-0.04-r1/image/usr/lib64/perl5/vendor_perl/5.30.3/GO/AppHandles/AppHandleCachingImpl.pm
Installing /var/tmp/portage/dev-perl/go-db-perl-0.04-r1/image/usr/lib64/perl5/vendor_perl/5.30.3/GO/AppHandles/AppHandleSqlImpl.pm
Installing /var/tmp/portage/dev-perl/go-db-perl-0.04-r1/image/usr/lib64/perl5/vendor_perl/5.30.3/GO/AppHandles/AppHandleAbstractSqlImpl.pm
Installing /var/tmp/portage/dev-perl/go-db-perl-0.04-r1/image/usr/lib64/perl5/vendor_perl/5.30.3/GO/AppHandles/AppHandleChadoSqlImpl.pm
Installing /var/tmp/portage/dev-perl/go-db-perl-0.04-r1/image/usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/godb.pm
Installing /var/tmp/portage/dev-perl/go-db-perl-0.04-r1/image/usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/db.pm
Installing /var/tmp/portage/dev-perl/go-db-perl-0.04-r1/image/usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/genericdb.pm
 * Fixing packlist file //usr/lib64/perl5/vendor_perl/5.30.3/x86_64-linux/auto/GO/.packlist
 * Pruning surplus packlist entry /usr/bin/go-apply-xslt
 * Pruning surplus packlist entry /usr/bin/go-dag-summary.pl
 * Pruning surplus packlist entry /usr/bin/go-export-graph.pl
 * Pruning surplus packlist entry /usr/bin/go-export-prolog.pl
 * Pruning surplus packlist entry /usr/bin/go-filter-subset.pl
 * Pruning surplus packlist entry /usr/bin/go-show-assocs-by-node.pl
 * Pruning surplus packlist entry /usr/bin/go-show-paths-to-root.pl
 * Pruning surplus packlist entry /usr/bin/go2chadoxml
 * Pruning surplus packlist entry /usr/bin/go2error_report
 * Pruning surplus packlist entry /usr/bin/go2fmt.pl
 * Pruning surplus packlist entry /usr/bin/go2godb_prestore
 * Pruning surplus packlist entry /usr/bin/go2obo
 * Pruning surplus packlist entry /usr/bin/go2obo_html
 * Pruning surplus packlist entry /usr/bin/go2obo_text
 * Pruning surplus packlist entry /usr/bin/go2obo_xml
 * Pruning surplus packlist entry /usr/bin/go2owl
 * Pruning surplus packlist entry /usr/bin/go2pathlist
 * Pruning surplus packlist entry /usr/bin/go2prolog
 * Pruning surplus packlist entry /usr/bin/go2rdf
 * Pruning surplus packlist entry /usr/bin/go2rdfxml
 * Pruning surplus packlist entry /usr/bin/go2summary
 * Pruning surplus packlist entry /usr/bin/go2sxpr
 * Pruning surplus packlist entry /usr/bin/go2tbl
 * Pruning surplus packlist entry /usr/bin/go2text_html
 * Pruning surplus packlist entry /usr/bin/go2xml
 * Pruning surplus packlist entry /usr/bin/map2slim
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Basic.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/abstract_prolog_writer.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/abstract_sql_writer.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/base.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/go_def.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/go_ont.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/go_xref.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/godb_prestore.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/lexanalysis.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/lexanalysis2sql.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/obj.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/obj_storable.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/obj_yaml.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/obo.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/obo_godb_flat.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/obo_html.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/obo_sxpr.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/obo_text.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/obo_xml.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/owl.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/owl_to_obo_text.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/pathlist.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/prolog.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/rdf.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/summary.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/sxpr.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/tbl.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/text_html.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/xml.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Handlers/xsl_base.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/IO/Analysis.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/IO/Blast.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/IO/Dotty.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/IO/OBDXML.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/IO/ObanOwl.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/IO/RDFXML.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/IO/XML.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/IO/go_assoc.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Metadata/Panther.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Model/Association.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Model/CrossProduct.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Model/DB.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Model/Evidence.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Model/GeneProduct.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Model/Graph.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Model/GraphIterator.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Model/GraphNodeInstance.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Model/LogicalDefinition.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Model/Modification.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Model/Ontology.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Model/Path.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Model/Property.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Model/Relationship.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Model/Restriction.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Model/Root.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Model/Seq.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Model/Species.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Model/Term.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Model/TreeIterator.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Model/Xref.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/ObjCache.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/ObjFactory.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parser.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parsers/ParserEventNames.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parsers/base_parser.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parsers/generic_tagval_parser.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parsers/go_assoc_parser.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parsers/go_def_parser.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parsers/go_ids_parser.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parsers/go_ont_parser.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parsers/go_xref_parser.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parsers/locuslink_parser.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parsers/mesh_parser.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parsers/mgi_assoc_parser.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parsers/ncbi_taxon_names_parser.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parsers/ncbi_taxonomy_parser.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parsers/obj_emitter.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parsers/obj_storable_parser.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parsers/obj_yaml_parser.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parsers/obo_parser.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parsers/obo_text_parser.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parsers/obo_xml_parser.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parsers/owl_parser.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parsers/references_parser.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parsers/refgenomes_parser.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parsers/unknown_format_parser.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Parsers/xrf_abbs_parser.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/Utils.pm
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/xsl/chadoxml_to_oboxml.xsl
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/xsl/ipr_to_oboxml.xsl
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/xsl/oboxml_filter.xsl
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/xsl/oboxml_to_chadoxml.xsl
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/xsl/oboxml_to_dig.xsl
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/xsl/oboxml_to_godb_prestore.xsl
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/xsl/oboxml_to_obd_prestore.xsl
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/xsl/oboxml_to_obotext.xsl
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/xsl/oboxml_to_owl.xsl
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/xsl/oboxml_to_racer.xsl
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/xsl/oboxml_to_simple_owl.xsl
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/xsl/oboxml_to_summary_table.xsl
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/xsl/owl_to_oboxml.xsl
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/GO/xsl/text_html.xsl
 * Pruning surplus packlist entry /usr/lib64/perl5/vendor_perl/5.30.3/go-perl.pod
 * Pruning surplus packlist entry /usr/share/man/man1/go-apply-xslt.1
 * Pruning surplus packlist entry /usr/share/man/man1/go-dag-summary.pl.1
 * Pruning surplus packlist entry /usr/share/man/man1/go-export-graph.pl.1
 * Pruning surplus packlist entry /usr/share/man/man1/go-export-prolog.pl.1
 * Pruning surplus packlist entry /usr/share/man/man1/go-filter-subset.pl.1
 * Pruning surplus packlist entry /usr/share/man/man1/go-show-assocs-by-node.pl.1
 * Pruning surplus packlist entry /usr/share/man/man1/go-show-paths-to-root.pl.1
 * Pruning surplus packlist entry /usr/share/man/man1/go2error_report.1
 * Pruning surplus packlist entry /usr/share/man/man1/go2fmt.pl.1
 * Pruning surplus packlist entry /usr/share/man/man1/map2slim.1
>>> Completed installing dev-perl/go-db-perl-0.04-r1 into /var/tmp/portage/dev-perl/go-db-perl-0.04-r1/image

 * Final size of build directory: 4048 KiB (3.9 MiB)
 * Final size of installed tree:   512 KiB

 * checking 20 files for package collisions
 * This package will overwrite one or more files that may belong to other
 * packages (see list below). You can use a command such as `portageq
 * owners / <filename>` to identify the installed package that owns a
 * file. If portageq reports that only one package owns a file then do
 * NOT file a bug report. A bug report is only useful if it identifies at
 * least two or more packages that are known to install the same file(s).
 * If a collision occurs and you can not explain where the file came from
 * then you should simply ignore the collision since there is not enough
 * information to determine if a real problem exists. Please do NOT file
 * a bug report at https://bugs.gentoo.org/ unless you report exactly
 * which two packages install the same file(s). See
 * https://wiki.gentoo.org/wiki/Knowledge_Base:Blockers for tips on how
 * to solve the problem. And once again, please do NOT file a bug report
 * unless you have completely understood the above message.
 * 
 * Detected file collision(s):
 * 
 * 	/usr/lib64/perl5/vendor_perl/5.30.3/x86_64-linux/auto/GO/.packlist
 * 
 * Searching all installed packages for file collisions...
 * 
 * Press Ctrl-C to Stop
 * 
 * dev-perl/go-perl-0.150.0:0::gentoo
 * 	/usr/lib64/perl5/vendor_perl/5.30.3/x86_64-linux/auto/GO/.packlist
 * 
 * Package 'dev-perl/go-db-perl-0.04-r1' NOT merged due to file
 * collisions. If necessary, refer to your elog messages for the whole
 * content of the above message.