* Package:    sci-biology/snap-20131129
 * Repository: science
 * Maintainer: mmokrejs@fold.natur.cuni.cz sci-biology@gentoo.org
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking snap-2013-11-29.tar.gz to /var/tmp/portage/sci-biology/snap-20131129/work
>>> Source unpacked in /var/tmp/portage/sci-biology/snap-20131129/work
>>> Preparing source in /var/tmp/portage/sci-biology/snap-20131129/work/snap ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/snap-20131129/work/snap ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/snap-20131129/work/snap ...
make -j1 
make gcc
make[1]: Entering directory '/var/tmp/portage/sci-biology/snap-20131129/work/snap'
cd Zoe; make;
make[2]: Entering directory '/var/tmp/portage/sci-biology/snap-20131129/work/snap/Zoe'
make gcc
make[3]: Entering directory '/var/tmp/portage/sci-biology/snap-20131129/work/snap/Zoe'
make zoe-loop  CC=x86_64-pc-linux-gnu-gcc
make[4]: Entering directory '/var/tmp/portage/sci-biology/snap-20131129/work/snap/Zoe'
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color  -c -o zoe-loop.o zoe-loop.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color  -c -o zoeAlignment.o zoeAlignment.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color  -c -o zoeCDS.o zoeCDS.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color  -c -o zoeCounter.o zoeCounter.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color  -c -o zoeDNA.o zoeDNA.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color  -c -o zoeDistribution.o zoeDistribution.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color  -c -o zoeDuration.o zoeDuration.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color  -c -o zoeFastaFile.o zoeFastaFile.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color  -c -o zoeFeature.o zoeFeature.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color  -c -o zoeFeatureFactory.o zoeFeatureFactory.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color  -c -o zoeFeatureTable.o zoeFeatureTable.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color  -c -o zoeHMM.o zoeHMM.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color  -c -o zoeIsochore.o zoeIsochore.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color  -c -o zoeMath.o zoeMath.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color  -c -o zoeModel.o zoeModel.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color  -c -o zoePhasePref.o zoePhasePref.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color  -c -o zoeProtein.o zoeProtein.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color  -c -o zoeScanner.o zoeScanner.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color  -c -o zoeState.o zoeState.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color  -c -o zoeTools.o zoeTools.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color  -c -o zoeTransition.o zoeTransition.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color  -c -o zoeTrellis.o zoeTrellis.c
x86_64-pc-linux-gnu-gcc -o zoe-loop -O2 -pipe -march=native -fno-diagnostics-color  zoe-loop.o zoeAlignment.o zoeCDS.o zoeCounter.o zoeDNA.o zoeDistribution.o zoeDuration.o zoeFastaFile.o zoeFeature.o zoeFeatureFactory.o zoeFeatureTable.o zoeHMM.o zoeIsochore.o zoeMath.o zoeModel.o zoePhasePref.o zoeProtein.o zoeScanner.o zoeState.o zoeTools.o zoeTransition.o zoeTrellis.o  -lm
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeAlignment.o:(.bss+0x0): multiple definition of `zoeMethod'; zoe-loop.o:(.bss+0x0): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeAlignment.o:(.bss+0x8): multiple definition of `zoeConstructor'; zoe-loop.o:(.bss+0x8): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeAlignment.o:(.bss+0x10): multiple definition of `zoeFunction'; zoe-loop.o:(.bss+0x10): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeCDS.o:(.bss+0x0): multiple definition of `zoeMethod'; zoe-loop.o:(.bss+0x0): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeCDS.o:(.bss+0x8): multiple definition of `zoeConstructor'; zoe-loop.o:(.bss+0x8): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeCDS.o:(.bss+0x10): multiple definition of `zoeFunction'; zoe-loop.o:(.bss+0x10): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeCounter.o:(.bss+0x0): multiple definition of `zoeMethod'; zoe-loop.o:(.bss+0x0): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeCounter.o:(.bss+0x8): multiple definition of `zoeConstructor'; zoe-loop.o:(.bss+0x8): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeCounter.o:(.bss+0x10): multiple definition of `zoeFunction'; zoe-loop.o:(.bss+0x10): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeDNA.o:(.bss+0x0): multiple definition of `zoeMethod'; zoe-loop.o:(.bss+0x0): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeDNA.o:(.bss+0x8): multiple definition of `zoeConstructor'; zoe-loop.o:(.bss+0x8): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeDNA.o:(.bss+0x10): multiple definition of `zoeFunction'; zoe-loop.o:(.bss+0x10): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeDistribution.o:(.bss+0x0): multiple definition of `zoeMethod'; zoe-loop.o:(.bss+0x0): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeDistribution.o:(.bss+0x8): multiple definition of `zoeConstructor'; zoe-loop.o:(.bss+0x8): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeDistribution.o:(.bss+0x10): multiple definition of `zoeFunction'; zoe-loop.o:(.bss+0x10): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeDuration.o:(.bss+0x0): multiple definition of `zoeMethod'; zoe-loop.o:(.bss+0x0): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeDuration.o:(.bss+0x8): multiple definition of `zoeConstructor'; zoe-loop.o:(.bss+0x8): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeDuration.o:(.bss+0x10): multiple definition of `zoeFunction'; zoe-loop.o:(.bss+0x10): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeFastaFile.o:(.bss+0x0): multiple definition of `zoeMethod'; zoe-loop.o:(.bss+0x0): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeFastaFile.o:(.bss+0x8): multiple definition of `zoeConstructor'; zoe-loop.o:(.bss+0x8): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeFastaFile.o:(.bss+0x10): multiple definition of `zoeFunction'; zoe-loop.o:(.bss+0x10): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeFeature.o:(.bss+0x0): multiple definition of `zoeMethod'; zoe-loop.o:(.bss+0x0): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeFeature.o:(.bss+0x8): multiple definition of `zoeConstructor'; zoe-loop.o:(.bss+0x8): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeFeature.o:(.bss+0x10): multiple definition of `zoeFunction'; zoe-loop.o:(.bss+0x10): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeFeatureFactory.o:(.bss+0x0): multiple definition of `zoeMethod'; zoe-loop.o:(.bss+0x0): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeFeatureFactory.o:(.bss+0x8): multiple definition of `zoeConstructor'; zoe-loop.o:(.bss+0x8): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeFeatureFactory.o:(.bss+0x10): multiple definition of `zoeFunction'; zoe-loop.o:(.bss+0x10): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeFeatureTable.o:(.bss+0x0): multiple definition of `zoeMethod'; zoe-loop.o:(.bss+0x0): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeFeatureTable.o:(.bss+0x8): multiple definition of `zoeConstructor'; zoe-loop.o:(.bss+0x8): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeFeatureTable.o:(.bss+0x10): multiple definition of `zoeFunction'; zoe-loop.o:(.bss+0x10): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeHMM.o:(.bss+0x0): multiple definition of `zoeMethod'; zoe-loop.o:(.bss+0x0): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeHMM.o:(.bss+0x8): multiple definition of `zoeConstructor'; zoe-loop.o:(.bss+0x8): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeHMM.o:(.bss+0x10): multiple definition of `zoeFunction'; zoe-loop.o:(.bss+0x10): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeIsochore.o:(.bss+0x0): multiple definition of `zoeMethod'; zoe-loop.o:(.bss+0x0): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeIsochore.o:(.bss+0x8): multiple definition of `zoeConstructor'; zoe-loop.o:(.bss+0x8): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeIsochore.o:(.bss+0x10): multiple definition of `zoeFunction'; zoe-loop.o:(.bss+0x10): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeMath.o:(.bss+0x0): multiple definition of `zoeMethod'; zoe-loop.o:(.bss+0x0): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeMath.o:(.bss+0x8): multiple definition of `zoeConstructor'; zoe-loop.o:(.bss+0x8): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeMath.o:(.bss+0x10): multiple definition of `zoeFunction'; zoe-loop.o:(.bss+0x10): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeModel.o:(.bss+0x0): multiple definition of `zoeMethod'; zoe-loop.o:(.bss+0x0): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeModel.o:(.bss+0x8): multiple definition of `zoeConstructor'; zoe-loop.o:(.bss+0x8): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeModel.o:(.bss+0x10): multiple definition of `zoeFunction'; zoe-loop.o:(.bss+0x10): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoePhasePref.o:(.bss+0x0): multiple definition of `zoeMethod'; zoe-loop.o:(.bss+0x0): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoePhasePref.o:(.bss+0x8): multiple definition of `zoeConstructor'; zoe-loop.o:(.bss+0x8): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoePhasePref.o:(.bss+0x10): multiple definition of `zoeFunction'; zoe-loop.o:(.bss+0x10): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeProtein.o:(.bss+0x0): multiple definition of `zoeMethod'; zoe-loop.o:(.bss+0x0): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeProtein.o:(.bss+0x8): multiple definition of `zoeConstructor'; zoe-loop.o:(.bss+0x8): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeProtein.o:(.bss+0x10): multiple definition of `zoeFunction'; zoe-loop.o:(.bss+0x10): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeScanner.o:(.bss+0x0): multiple definition of `zoeMethod'; zoe-loop.o:(.bss+0x0): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeScanner.o:(.bss+0x8): multiple definition of `zoeConstructor'; zoe-loop.o:(.bss+0x8): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeScanner.o:(.bss+0x10): multiple definition of `zoeFunction'; zoe-loop.o:(.bss+0x10): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeState.o:(.bss+0x0): multiple definition of `zoeMethod'; zoe-loop.o:(.bss+0x0): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeState.o:(.bss+0x8): multiple definition of `zoeConstructor'; zoe-loop.o:(.bss+0x8): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeState.o:(.bss+0x10): multiple definition of `zoeFunction'; zoe-loop.o:(.bss+0x10): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeTools.o:(.bss+0x0): multiple definition of `zoeMethod'; zoe-loop.o:(.bss+0x0): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeTools.o:(.bss+0x8): multiple definition of `zoeConstructor'; zoe-loop.o:(.bss+0x8): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeTools.o:(.bss+0x10): multiple definition of `zoeFunction'; zoe-loop.o:(.bss+0x10): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeTransition.o:(.bss+0x0): multiple definition of `zoeMethod'; zoe-loop.o:(.bss+0x0): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeTransition.o:(.bss+0x8): multiple definition of `zoeConstructor'; zoe-loop.o:(.bss+0x8): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeTransition.o:(.bss+0x10): multiple definition of `zoeFunction'; zoe-loop.o:(.bss+0x10): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeTrellis.o:(.bss+0x0): multiple definition of `zoeMethod'; zoe-loop.o:(.bss+0x0): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeTrellis.o:(.bss+0x8): multiple definition of `zoeConstructor'; zoe-loop.o:(.bss+0x8): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: zoeTrellis.o:(.bss+0x10): multiple definition of `zoeFunction'; zoe-loop.o:(.bss+0x10): first defined here
collect2: error: ld returned 1 exit status
make[4]: *** [Makefile:61: zoe-loop] Error 1
make[4]: Leaving directory '/var/tmp/portage/sci-biology/snap-20131129/work/snap/Zoe'
make[3]: *** [Makefile:95: gcc] Error 2
make[3]: Leaving directory '/var/tmp/portage/sci-biology/snap-20131129/work/snap/Zoe'
make[2]: *** [Makefile:58: default] Error 2
make[2]: Leaving directory '/var/tmp/portage/sci-biology/snap-20131129/work/snap/Zoe'
make[1]: *** [Makefile:96: gcc] Error 2
make[1]: Leaving directory '/var/tmp/portage/sci-biology/snap-20131129/work/snap'
make: *** [Makefile:58: default] Error 2
 * ERROR: sci-biology/snap-20131129::science failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-biology/snap-20131129::science'`,
 * the complete build log and the output of `emerge -pqv '=sci-biology/snap-20131129::science'`.
 * The complete build log is located at '/var/log/portage/sci-biology:snap-20131129:20201120-062726.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/snap-20131129/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-biology/snap-20131129/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-biology/snap-20131129/work/snap'
 * S: '/var/tmp/portage/sci-biology/snap-20131129/work/snap'