sci-biology:ncbi-blast+-2.8.1:20201120-065405.log

sci-biology:ncbi-blast+-2.8.1:20201120-065405.log (text/plain), 4.53 KB, created by Toralf Förster on 2020-11-20 15:54:45 UTC

 * Package:    sci-biology/ncbi-blast+-2.8.1
 * Repository: science
 * Maintainer: [e-mail] [e-mail]
 * USE:        abi_x86_64 amd64 berkdb bzip2 elibc_glibc icu kernel_linux pcre python_single_target_python2_7 userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
 * Using python2.7 to build
>>> Unpacking source...
>>> Unpacking ncbi-blast-2.8.1+-src.tar.gz to /var/tmp/portage/sci-biology/ncbi-blast+-2.8.1/work
>>> Source unpacked in /var/tmp/portage/sci-biology/ncbi-blast+-2.8.1/work
>>> Preparing source in /var/tmp/portage/sci-biology/ncbi-blast+-2.8.1/work/ncbi-blast-2.8.1+-src/c++ ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/ncbi-blast+-2.8.1/work/ncbi-blast-2.8.1+-src/c++ ...
 * bash ./src/build-system/configure --srcdir=/var/tmp/portage/sci-biology/ncbi-blast+-2.8.1/work/ncbi-blast-2.8.1+-src/c++ --prefix=/usr --libdir=/usr/lib64 --with-dll --with-lfs --with-build-root=/var/tmp/portage/sci-biology/ncbi-blast+-2.8.1/work/ncbi-blast-2.8.1+-src/c++_build --without-suffix --without-hostspec --without-version --with-bincopy --without-strip --without-ccache --without-distcc --without-ctools --with-z=/usr --with-bz2=/usr --without-sybase --with-autodep --without-debug --without-max-debug --without-symbols --without-static --without-static-exe --without-mt --without-runpath --without-check --without-pch --without-lzo --with-pcre=/usr --without-gnutls --without-mysql --without-muparser --without-opengl --without-mesa --without-glut --without-glew --without-wxwidgets --without-wxwidgets-ucs --without-freetype --without-python --without-boost --without-sqlite3 --with-icu=/usr --without-expat --without-libxml --without-libxslt --without-xerces --without-hdf5 --without-xalan --without-gif --without-jpeg --without-tiff --without-png --without-xpm --without-curl --without-vdb --with-projects=/var/tmp/portage/sci-biology/ncbi-blast+-2.8.1/files/disable-testsuite-compilation.txt
configure: loading site script ./src/build-system/config.site

configure: creating cache config.cache
checking TeamCity build number... none
checking Subversion revision... unknown
checking NCBI stable components' version... unknown
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/lib/portage/python3.7/ebuild-helpers/xattr/install -c
checking for gcc... x86_64-pc-linux-gnu-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for gcc... gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
configure: error: Do not know how to parse GCC version number 10.2.0
 * ERROR: sci-biology/ncbi-blast+-2.8.1::science failed (configure phase):
 *   Maybe try new src/build-system/cmake/cmake-configure instead?
 * 
 * Call stack:
 *     ebuild.sh, line 125:  Called src_configure
 *   environment, line 2683:  Called die
 * The specific snippet of code:
 *       bash ./src/build-system/configure --srcdir="${S}" --prefix="${EPREFIX}/usr" --libdir=/usr/lib64 --with-flat-makefile ${myconf[@]} || die "Maybe try new src/build-system/cmake/cmake-configure instead?"
 * 
 * If you need support, post the output of `emerge --info '=sci-biology/ncbi-blast+-2.8.1::science'`,
 * the complete build log and the output of `emerge -pqv '=sci-biology/ncbi-blast+-2.8.1::science'`.
 * The complete build log is located at '/var/log/portage/sci-biology:ncbi-blast+-2.8.1:20201120-065405.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/ncbi-blast+-2.8.1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-biology/ncbi-blast+-2.8.1/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-biology/ncbi-blast+-2.8.1/work/ncbi-blast-2.8.1+-src/c++'
 * S: '/var/tmp/portage/sci-biology/ncbi-blast+-2.8.1/work/ncbi-blast-2.8.1+-src/c++'