build.log on gcc machine

build.log (text/plain), 27.35 KB, created by Uwe Scholz on 2020-11-05 20:43:45 UTC

 * Package:    sci-geosciences/gmt-5.4.4
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
 * FEATURES:   distcc preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking gmt-5.4.4-src.tar.xz to /dev/shm/portage/sci-geosciences/gmt-5.4.4/work
>>> Source unpacked in /dev/shm/portage/sci-geosciences/gmt-5.4.4/work
>>> Preparing source in /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4 ...
 * Working in BUILD_DIR: "/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4_build"
/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/man_release /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4
/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4
>>> Source prepared.
>>> Configuring source in /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4 ...
 * Working in BUILD_DIR: "/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4_build"
cmake -C /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DGMT_DATADIR=share/gmt-5.4.4 -DGMT_DOCDIR=share/doc/gmt-5.4.4 -DGMT_MANDIR=share/man -DLICENSE_RESTRICTED=yes -DGMT_OPENMP=no -DGMT_USE_THREADS=no -DGMT_INSTALL_TRADITIONAL_FOLDERNAMES=OFF -DGMT_INSTALL_MODULE_LINKS=OFF -DBASH_COMPLETION_DIR=/usr/share/bash-completion/completions -DCMAKE_DISABLE_FIND_PACKAGE_GDAL=ON -DCMAKE_DISABLE_FIND_PACKAGE_FFTW3=ON -DCMAKE_DISABLE_FIND_PACKAGE_LAPACK=ON -DCMAKE_DISABLE_FIND_PACKAGE_PCRE=ON -DCMAKE_DISABLE_FIND_PACKAGE_PCRE2=ON -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_TOOLCHAIN_FILE=/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4_build/gentoo_toolchain.cmake  /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4
loading initial cache file /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4_build/gentoo_common_config.cmake
CMake Deprecation Warning at CMakeLists.txt:63 (cmake_policy):
  The OLD behavior for policy CMP0026 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


-- The C compiler identification is GNU 9.3.0
-- Check for working C compiler: /usr/lib/distcc/bin/x86_64-pc-linux-gnu-gcc
-- Check for working C compiler: /usr/lib/distcc/bin/x86_64-pc-linux-gnu-gcc - works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
CMake Warning at cmake/modules/ConfigCMake.cmake:119 (message):
  unknown license: yes
Call Stack (most recent call first):
  CMakeLists.txt:75 (include)


-- Found UnixCommands: /bin/bash  
-- Searching dependent libraries. This may take a few minutes...
-- Looking for nc_def_var_deflate
-- Looking for nc_def_var_deflate - found
-- Found NETCDF: /usr/lib64/libnetcdf.so  
-- Found CURL: /usr/lib64/libcurl.so (found version "7.72.0")  
-- Performing Test REGCOMP_IN_LIBC
-- Performing Test REGCOMP_IN_LIBC - Success
-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.11") 
-- Found OpenMP_C: -fopenmp (found version "4.5") 
-- Found OpenMP: TRUE (found version "4.5")  
-- User variable GMT_OPENMP not set: disabling OpenMP.
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Found PkgConfig: x86_64-pc-linux-gnu-pkg-config (found version "1.6.3") 
-- Found GLIB: /usr/include/glib-2.0;/usr/lib64/glib-2.0/include (found version "2.64.5") 
-- User variable GMT_USE_THREADS not set: disabling GThread.
-- Performing Test HAVE_TRADITIONAL_CPP
-- Performing Test HAVE_TRADITIONAL_CPP - Failed
-- Performing Test HAVE___FUNC__
-- Performing Test HAVE___FUNC__ - Success
-- Performing Test HAVE___FUNCTION__
-- Performing Test HAVE___FUNCTION__ - Success
-- Performing Test HAVE_C_inline
-- Performing Test HAVE_C_inline - Success
-- Looking for io.h
-- Looking for io.h - not found
-- Looking for direct.h
-- Looking for direct.h - not found
-- Looking for process.h
-- Looking for process.h - not found
-- Looking for assert.h
-- Looking for assert.h - found
-- Looking for dirent.h
-- Looking for dirent.h - found
-- Looking for errno.h
-- Looking for errno.h - found
-- Looking for execinfo.h
-- Looking for execinfo.h - found
-- Looking for fcntl.h
-- Looking for fcntl.h - found
-- Looking for signal.h
-- Looking for signal.h - found
-- Looking for stdbool.h
-- Looking for stdbool.h - found
-- Looking for sys/dir.h
-- Looking for sys/dir.h - found
-- Looking for sys/resource.h
-- Looking for sys/resource.h - found
-- Looking for sys/stat.h
-- Looking for sys/stat.h - found
-- Looking for sys/time.h
-- Looking for sys/time.h - found
-- Looking for sys/ucontext.h
-- Looking for sys/ucontext.h - found
-- Looking for unistd.h
-- Looking for unistd.h - found
-- Looking for fcntl
-- Looking for fcntl - found
-- Looking for fopen64
-- Looking for fopen64 - found
-- Looking for fseeko
-- Looking for fseeko - found
-- Looking for ftello
-- Looking for ftello - found
-- Looking for getopt
-- Looking for getopt - found
-- Looking for getpwuid
-- Looking for getpwuid - found
-- Looking for abs
-- Looking for abs - found
-- Looking for llabs
-- Looking for llabs - found
-- Looking for pclose
-- Looking for pclose - found
-- Looking for popen
-- Looking for popen - found
-- Looking for qsort_r
-- Looking for qsort_r - found
-- Performing Test HAVE_QSORT_R_GLIBC
-- Performing Test HAVE_QSORT_R_GLIBC - Success
-- Looking for strcasecmp
-- Looking for strcasecmp - found
-- Looking for strncasecmp
-- Looking for strncasecmp - found
-- Looking for stricmp
-- Looking for stricmp - not found
-- Looking for strnicmp
-- Looking for strnicmp - not found
-- Looking for strdup
-- Looking for strdup - found
-- Looking for strndup
-- Looking for strndup - found
-- Looking for strsep
-- Looking for strsep - found
-- Looking for strtod
-- Looking for strtod - found
-- Looking for strtof
-- Looking for strtof - found
-- Looking for strtok_r
-- Looking for strtok_r - found
-- Looking for strdup
-- Looking for strdup - found
-- Looking for strsep
-- Looking for strsep - found
-- Looking for basename
-- Looking for basename - found
-- Looking for fileno
-- Looking for fileno - found
-- Looking for setlocale
-- Looking for setlocale - found
-- Looking for snprintf
-- Looking for snprintf - found
-- Looking for vsnprintf
-- Looking for vsnprintf - found
-- Looking for access
-- Looking for access - found
-- Looking for getpid
-- Looking for getpid - found
-- Looking for dlopen
-- Looking for dlopen - not found
-- Looking for dlopen in dl
-- Looking for dlopen in dl - found
-- Looking for dladdr
-- Looking for dladdr - found
-- Looking for memalign
-- Looking for memalign - found
-- Looking for posix_memalign
-- Looking for posix_memalign - found
-- Performing Test HAVE_SC_NPROCESSORS_ONLN
-- Performing Test HAVE_SC_NPROCESSORS_ONLN - Success
-- Performing Test HAVE_SC_NPROC_ONLN
-- Performing Test HAVE_SC_NPROC_ONLN - Failed
-- Performing Test HAVE_SYSCTL_HW_NCPU
-- Performing Test HAVE_SYSCTL_HW_NCPU - Failed
-- Looking for ctype.h
-- Looking for ctype.h - found
-- Looking for inttypes.h
-- Looking for inttypes.h - found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of _Bool
-- Check size of _Bool - done
-- Check size of bool
-- Check size of bool - failed
-- Check size of int
-- Check size of int - done
-- Check size of greg_t
-- Check size of greg_t - done
-- Check size of long
-- Check size of long - done
-- Check size of long long
-- Check size of long long - done
-- Check size of long double
-- Check size of long double - done
-- Check size of mode_t
-- Check size of mode_t - done
-- Check size of off_t
-- Check size of off_t - done
-- Check size of size_t
-- Check size of size_t - done
-- Check size of wchar_t
-- Check size of wchar_t - done
-- Check size of void*
-- Check size of void* - done
-- Check if the system is big endian
-- Searching 16 bit integer
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Searching 16 bit integer - Using unsigned short
-- Check if the system is big endian - little endian
-- Performing Test HAVE___BUILTIN_BSWAP16
-- Performing Test HAVE___BUILTIN_BSWAP16 - Success
-- Performing Test HAVE___BUILTIN_BSWAP32
-- Performing Test HAVE___BUILTIN_BSWAP32 - Success
-- Performing Test HAVE___BUILTIN_BSWAP64
-- Performing Test HAVE___BUILTIN_BSWAP64 - Success
-- Looking for floatingpoint.h
-- Looking for floatingpoint.h - not found
-- Looking for ieeefp.h
-- Looking for ieeefp.h - not found
-- Looking for cos
-- Looking for cos - not found
-- Looking for cos in m
-- Looking for cos in m - found
-- Looking for acosh
-- Looking for acosh - found
-- Looking for asinh
-- Looking for asinh - found
-- Looking for atanh
-- Looking for atanh - found
-- Looking for copysign
-- Looking for copysign - found
-- Looking for erf
-- Looking for erf - found
-- Looking for erfc
-- Looking for erfc - found
-- Looking for hypot
-- Looking for hypot - found
-- Looking for isfinite
-- Looking for isfinite - found
-- Looking for isinf
-- Looking for isinf - found
-- Looking for isnan
-- Looking for isnan - found
-- Looking for isnand
-- Looking for isnand - not found
-- Looking for isnanf
-- Looking for isnanf - found
-- Looking for isnormal
-- Looking for isnormal - found
-- Looking for j0
-- Looking for j0 - found
-- Looking for j1
-- Looking for j1 - found
-- Looking for jn
-- Looking for jn - found
-- Looking for lrint
-- Looking for lrint - found
-- Looking for llrint
-- Looking for llrint - found
-- Looking for log1p
-- Looking for log1p - found
-- Looking for log2
-- Looking for log2 - found
-- Looking for rint
-- Looking for rint - found
-- Looking for sincos
-- Looking for sincos - found
-- Looking for y0
-- Looking for y0 - found
-- Looking for y1
-- Looking for y1 - found
-- Looking for yn
-- Looking for yn - found
-- Looking for acosf
-- Looking for acosf - found
-- Looking for acoshf
-- Looking for acoshf - found
-- Looking for asinf
-- Looking for asinf - found
-- Looking for asinhf
-- Looking for asinhf - found
-- Looking for atanf
-- Looking for atanf - found
-- Looking for atanhf
-- Looking for atanhf - found
-- Looking for atan2f
-- Looking for atan2f - found
-- Looking for erff
-- Looking for erff - found
-- Looking for ceilf
-- Looking for ceilf - found
-- Looking for cosf
-- Looking for cosf - found
-- Looking for coshf
-- Looking for coshf - found
-- Looking for erfcf
-- Looking for erfcf - found
-- Looking for expf
-- Looking for expf - found
-- Looking for fabsf
-- Looking for fabsf - found
-- Looking for floorf
-- Looking for floorf - found
-- Looking for fmodf
-- Looking for fmodf - found
-- Looking for hypotf
-- Looking for hypotf - found
-- Looking for logf
-- Looking for logf - found
-- Looking for log2f
-- Looking for log2f - found
-- Looking for log10f
-- Looking for log10f - found
-- Looking for log1pf
-- Looking for log1pf - found
-- Looking for lrintf
-- Looking for lrintf - found
-- Looking for llrintf
-- Looking for llrintf - found
-- Looking for powf
-- Looking for powf - found
-- Looking for rintf
-- Looking for rintf - found
-- Looking for sinf
-- Looking for sinf - found
-- Looking for sinhf
-- Looking for sinhf - found
-- Looking for sqrtf
-- Looking for sqrtf - found
-- Looking for tanf
-- Looking for tanf - found
-- Looking for tanhf
-- Looking for tanhf - found
-- Checking whether system has ANSI C header files
-- Looking for 4 include files stdlib.h, ..., float.h
-- Looking for 4 include files stdlib.h, ..., float.h - found
-- Performing Test memchrExists
-- Performing Test memchrExists - Success
-- Performing Test freeExists
-- Performing Test freeExists - Success
-- ANSI C header files - found
-- Found GSHHG: /usr/share/gshhg  
-- Found DCW: /usr/share/dcw-gmt  
-- Using CFLAGS = '-std=gnu99 -march=ivybridge -O2 -pipe '
-- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE) 
*  Options:
*  Found GSHHG database       : /usr/share/gshhg (2.3.7)
*  Found DCW-GMT database     : /usr/share/dcw-gmt
*  NetCDF library             : /usr/lib64/libnetcdf.so
*  NetCDF include dir         : /usr/include
*  Curl library               : 
*  Curl include dir           : /usr/include
*  GDAL library               : 
*  GDAL include dir           : 
*  FFTW library               : 
*  FFTW include dir           : 
*  Accelerate Framework       : 
*  Regex support              : POSIX Regex (/usr/include/regex.h)
*  ZLIB library               : 
*  ZLIB include dir           : /usr/include
*  LAPACK library             : no
*  License restriction        : yes
*  Triangulation method       : Watson
*  OpenMP support             : disabled (GMT_OPENMP not set)
*  GLIB GTHREAD support       : disabled
*  PTHREAD support            : enabled
*  Build mode                 : shared
*  Build GMT core             : always [libgmt.so]
*  Build PSL library          : always [libpostscriptlight.so]
*  Build GMT supplements      : yes [supplements.so]
*  Build GMT for developers   : yes
*  Build proto supplements    : none
*
*  Locations:
*  Installing GMT in          : /usr
*  GMT_DATADIR                : /usr/share/gmt-5.4.4
*  GMT_DOCDIR                 : /usr/share/doc/gmt-5.4.4
*  GMT_MANDIR                 : /usr/share/man
-- <<< Gentoo configuration >>>
Build type      Gentoo
Install path    /usr
Compiler flags:
C               -std=gnu99 -march=ivybridge -O2 -pipe
C++             
Linker flags:
Executable      -Wl,-O1 -Wl,--as-needed
Module          -Wl,-O1 -Wl,--as-needed
Shared          -Wl,-O1 -Wl,--as-needed

-- Configuring done
-- Generating done
CMake Warning (dev):
  Policy CMP0058 is not set: Ninja requires custom command byproducts to be
  explicit.  Run "cmake --help-policy CMP0058" for policy details.  Use the
  cmake_policy command to set the policy and suppress this warning.

  This project specifies custom command DEPENDS on files in the build tree
  that are not specified as the OUTPUT or BYPRODUCTS of any
  add_custom_command or add_custom_target:

   doc/examples/_docs_rst_mkdir_verbatim
   doc/scripts/_docs_rst_mkdir_verbatim

  For compatibility with versions of CMake that did not have the BYPRODUCTS
  option, CMake is generating phony rules for such files to convince 'ninja'
  to build.

  Project authors should add the missing BYPRODUCTS or OUTPUT options to the
  custom commands that produce these files.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Build files have been written to: /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4_build
>>> Source configured.
>>> Compiling source in /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4 ...
 * Working in BUILD_DIR: "/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4_build"
ninja -v -j7 -l4
[1/202] cd /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4_build/src && /usr/bin/cmake -D GENERATE_COMMAND=gen_gmt_ellipsoids -D CMAKE_MODULE_PATH=/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/cmake/modules/ -D GMT_SRC=/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4 -P /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/cmake/modules//GmtGenExtraHeaders.cmake
[2/202] cd /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4_build/src && /usr/bin/cmake -D GENERATE_COMMAND=gen_gmt_datums_h -D CMAKE_MODULE_PATH=/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/cmake/modules/ -D GMT_SRC=/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4 -P /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/cmake/modules//GmtGenExtraHeaders.cmake
[3/202] /usr/lib/distcc/bin/x86_64-pc-linux-gnu-gcc  -Isrc -I/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src -Isrc/gshhg -Isrc/img -Isrc/meca -Isrc/mgd77 -Isrc/misc -Isrc/potential -Isrc/segy -Isrc/spotter -Isrc/x2sys  -std=gnu99 -march=ivybridge -O2 -pipe -MD -MT src/CMakeFiles/script2verbatim.dir/script2verbatim.c.o -MF src/CMakeFiles/script2verbatim.dir/script2verbatim.c.o.d -o src/CMakeFiles/script2verbatim.dir/script2verbatim.c.o -c /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src/script2verbatim.c
[4/202] /usr/lib/distcc/bin/x86_64-pc-linux-gnu-gcc  -Isrc -I/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src -Isrc/gshhg -Isrc/img -Isrc/meca -Isrc/mgd77 -Isrc/misc -Isrc/potential -Isrc/segy -Isrc/spotter -Isrc/x2sys  -std=gnu99 -march=ivybridge -O2 -pipe -MD -MT src/CMakeFiles/pthreads_example.dir/pthreads_example.c.o -MF src/CMakeFiles/pthreads_example.dir/pthreads_example.c.o.d -o src/CMakeFiles/pthreads_example.dir/pthreads_example.c.o -c /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src/pthreads_example.c
[5/202] cd /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4_build/src && /usr/bin/cmake -D GENERATE_COMMAND=gen_gmt_colors_h -D CMAKE_MODULE_PATH=/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/cmake/modules/ -D GMT_SRC=/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4 -P /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/cmake/modules//GmtGenExtraHeaders.cmake
[6/202] : && /usr/lib/distcc/bin/x86_64-pc-linux-gnu-gcc -std=gnu99 -march=ivybridge -O2 -pipe  -Wl,-O1 -Wl,--as-needed    -rdynamic src/CMakeFiles/script2verbatim.dir/script2verbatim.c.o  -o src/script2verbatim   && :
[7/202] : && /usr/lib/distcc/bin/x86_64-pc-linux-gnu-gcc -std=gnu99 -march=ivybridge -O2 -pipe  -Wl,-O1 -Wl,--as-needed    -rdynamic src/CMakeFiles/pthreads_example.dir/pthreads_example.c.o  -o src/pthreads_example  -lpthread && :
[8/202] cd /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4_build/src && /usr/bin/cmake -D GENERATE_COMMAND=gen_gmt_keywords_h -D CMAKE_MODULE_PATH=/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/cmake/modules/ -D GMT_SRC=/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4 -P /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/cmake/modules//GmtGenExtraHeaders.cmake
[9/202] cd /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4_build/src && /usr/bin/cmake -D GENERATE_COMMAND=gen_gmt_dimensions_h -D CMAKE_MODULE_PATH=/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/cmake/modules/ -D GMT_SRC=/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4 -P /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/cmake/modules//GmtGenExtraHeaders.cmake
[10/202] cd /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4_build/src && /usr/bin/cmake -D GENERATE_COMMAND=gen_gmt_math_h -D GMT=GMT -D gmt=gmt -D CMAKE_MODULE_PATH=/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/cmake/modules/ -D GMT_SRC=/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4 -P /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/cmake/modules//GmtGenExtraHeaders.cmake
[11/202] cd /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4_build/src && /usr/bin/cmake -D GENERATE_COMMAND=gen_grd_math_h -D GMT=GRD -D gmt=grd -D CMAKE_MODULE_PATH=/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/cmake/modules/ -D GMT_SRC=/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4 -P /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/cmake/modules//GmtGenExtraHeaders.cmake
[12/202] /usr/lib/distcc/bin/x86_64-pc-linux-gnu-gcc -DLIBRARY_EXPORTS -Isrc -I/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src -Isrc/gshhg -Isrc/img -Isrc/meca -Isrc/mgd77 -Isrc/misc -Isrc/potential -Isrc/segy -Isrc/spotter -Isrc/x2sys  -std=gnu99 -march=ivybridge -O2 -pipe -fPIC -MD -MT src/CMakeFiles/gmtlib.dir/gmt_bcr.c.o -MF src/CMakeFiles/gmtlib.dir/gmt_bcr.c.o.d -o src/CMakeFiles/gmtlib.dir/gmt_bcr.c.o -c /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src/gmt_bcr.c
[13/202] /usr/lib/distcc/bin/x86_64-pc-linux-gnu-gcc -DLIBRARY_EXPORTS -Isrc -I/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src -Isrc/gshhg -Isrc/img -Isrc/meca -Isrc/mgd77 -Isrc/misc -Isrc/potential -Isrc/segy -Isrc/spotter -Isrc/x2sys  -std=gnu99 -march=ivybridge -O2 -pipe -fPIC -MD -MT src/CMakeFiles/gmtlib.dir/common_sighandler.c.o -MF src/CMakeFiles/gmtlib.dir/common_sighandler.c.o.d -o src/CMakeFiles/gmtlib.dir/common_sighandler.c.o -c /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src/common_sighandler.c
[31mFAILED: [0msrc/CMakeFiles/gmtlib.dir/common_sighandler.c.o 
/usr/lib/distcc/bin/x86_64-pc-linux-gnu-gcc -DLIBRARY_EXPORTS -Isrc -I/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src -Isrc/gshhg -Isrc/img -Isrc/meca -Isrc/mgd77 -Isrc/misc -Isrc/potential -Isrc/segy -Isrc/spotter -Isrc/x2sys  -std=gnu99 -march=ivybridge -O2 -pipe -fPIC -MD -MT src/CMakeFiles/gmtlib.dir/common_sighandler.c.o -MF src/CMakeFiles/gmtlib.dir/common_sighandler.c.o.d -o src/CMakeFiles/gmtlib.dir/common_sighandler.c.o -c /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src/common_sighandler.c
distcc[69] ERROR: compile /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src/common_sighandler.c on 192.168.178.4/1 failed
distcc[69] (dcc_build_somewhere) Warning: remote compilation of '/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src/common_sighandler.c' failed, retrying locally
distcc[69] Warning: failed to distribute /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src/common_sighandler.c to 192.168.178.4/1, running locally instead
/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src/common_sighandler.c: In function ‘sig_handler’:
/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src/common_sighandler.c:190:73: error: ‘sys_siglist’ undeclared (first use in this function)
  190 |   fprintf (stderr, "ERROR: Caught signal number %d (%s) at\n", sig_num, sys_siglist[sig_num]);
      |                                                                         ^~~~~~~~~~~
/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src/common_sighandler.c:190:73: note: each undeclared identifier is reported only once for each function it appears in
distcc[69] ERROR: compile /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src/common_sighandler.c on localhost failed
[14/202] /usr/lib/distcc/bin/x86_64-pc-linux-gnu-gcc -DLIBRARY_EXPORTS -Isrc -I/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src -Isrc/gshhg -Isrc/img -Isrc/meca -Isrc/mgd77 -Isrc/misc -Isrc/potential -Isrc/segy -Isrc/spotter -Isrc/x2sys  -std=gnu99 -march=ivybridge -O2 -pipe -fPIC -MD -MT src/CMakeFiles/gmtlib.dir/gmt_customio.c.o -MF src/CMakeFiles/gmtlib.dir/gmt_customio.c.o.d -o src/CMakeFiles/gmtlib.dir/gmt_customio.c.o -c /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src/gmt_customio.c
[15/202] /usr/lib/distcc/bin/x86_64-pc-linux-gnu-gcc -DLIBRARY_EXPORTS -Isrc -I/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src -Isrc/gshhg -Isrc/img -Isrc/meca -Isrc/mgd77 -Isrc/misc -Isrc/potential -Isrc/segy -Isrc/spotter -Isrc/x2sys  -std=gnu99 -march=ivybridge -O2 -pipe -fPIC -MD -MT src/CMakeFiles/gmtlib.dir/gmt_calclock.c.o -MF src/CMakeFiles/gmtlib.dir/gmt_calclock.c.o.d -o src/CMakeFiles/gmtlib.dir/gmt_calclock.c.o -c /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src/gmt_calclock.c
[16/202] /usr/lib/distcc/bin/x86_64-pc-linux-gnu-gcc -DLIBRARY_EXPORTS -Isrc -I/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src -Isrc/gshhg -Isrc/img -Isrc/meca -Isrc/mgd77 -Isrc/misc -Isrc/potential -Isrc/segy -Isrc/spotter -Isrc/x2sys  -std=gnu99 -march=ivybridge -O2 -pipe -fPIC -MD -MT src/CMakeFiles/gmtlib.dir/gmt_compat.c.o -MF src/CMakeFiles/gmtlib.dir/gmt_compat.c.o.d -o src/CMakeFiles/gmtlib.dir/gmt_compat.c.o -c /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src/gmt_compat.c
[17/202] /usr/lib/distcc/bin/x86_64-pc-linux-gnu-gcc -DLIBRARY_EXPORTS -Isrc -I/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src -Isrc/gshhg -Isrc/img -Isrc/meca -Isrc/mgd77 -Isrc/misc -Isrc/potential -Isrc/segy -Isrc/spotter -Isrc/x2sys  -std=gnu99 -march=ivybridge -O2 -pipe -fPIC -MD -MT src/CMakeFiles/gmtlib.dir/gmt_cdf.c.o -MF src/CMakeFiles/gmtlib.dir/gmt_cdf.c.o.d -o src/CMakeFiles/gmtlib.dir/gmt_cdf.c.o -c /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src/gmt_cdf.c
[18/202] /usr/lib/distcc/bin/x86_64-pc-linux-gnu-gcc -DSTANDALONE -Isrc -I/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src -Isrc/gshhg -Isrc/img -Isrc/meca -Isrc/mgd77 -Isrc/misc -Isrc/potential -Isrc/segy -Isrc/spotter -Isrc/x2sys  -std=gnu99 -march=ivybridge -O2 -pipe -MD -MT src/CMakeFiles/gshhg_version.dir/gshhg_version.c.o -MF src/CMakeFiles/gshhg_version.dir/gshhg_version.c.o.d -o src/CMakeFiles/gshhg_version.dir/gshhg_version.c.o -c /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src/gshhg_version.c
[19/202] /usr/lib/distcc/bin/x86_64-pc-linux-gnu-gcc -DLIBRARY_EXPORTS -Isrc -I/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src -Isrc/gshhg -Isrc/img -Isrc/meca -Isrc/mgd77 -Isrc/misc -Isrc/potential -Isrc/segy -Isrc/spotter -Isrc/x2sys  -std=gnu99 -march=ivybridge -O2 -pipe -fPIC -MD -MT src/CMakeFiles/gmtlib.dir/gmt_api.c.o -MF src/CMakeFiles/gmtlib.dir/gmt_api.c.o.d -o src/CMakeFiles/gmtlib.dir/gmt_api.c.o -c /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src/gmt_api.c
In file included from /usr/include/string.h:519,
                 from /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src/gmt_dev.h:104,
                 from /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src/gmt_api.c:179:
In function ‘strncpy’,
    inlined from ‘api_get_moduleinfo’ at /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src/gmt_api.c:9599:4,
    inlined from ‘GMT_Encode_Options’ at /dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src/gmt_api.c:9770:14:
/usr/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src/gmt_api.c: In function ‘GMT_Encode_Options’:
/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4/src/gmt_api.c:9599:4: note: length computed here
 9599 |    strncpy(module, gmt_module, strlen(gmt_module)); /* Rewrite module name to contain prefix of gmt */
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ninja: build stopped: subcommand failed.
 * ERROR: sci-geosciences/gmt-5.4.4::gentoo failed (compile phase):
 *   ninja -v -j7 -l4 failed
 * 
 * Call stack:
 *     ebuild.sh, line  125:  Called src_compile
 *   environment, line 2065:  Called cmake_src_compile
 *   environment, line  736:  Called cmake_build
 *   environment, line  705:  Called eninja
 *   environment, line 1164:  Called die
 * The specific snippet of code:
 *       "$@" || die "${nonfatal_args[@]}" "${*} failed"
 * 
 * If you need support, post the output of `emerge --info '=sci-geosciences/gmt-5.4.4::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-geosciences/gmt-5.4.4::gentoo'`.
 * The complete build log is located at '/dev/shm/portage/sci-geosciences/gmt-5.4.4/temp/build.log'.
 * The ebuild environment file is located at '/dev/shm/portage/sci-geosciences/gmt-5.4.4/temp/environment'.
 * Working directory: '/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4_build'
 * S: '/dev/shm/portage/sci-geosciences/gmt-5.4.4/work/gmt-5.4.4'