Attachment 668924 Details for Bug 751550 – sci-libs:cifparse-obj-7.105:20201028-060947.log

sci-libs:cifparse-obj-7.105:20201028-060947.log

sci-libs:cifparse-obj-7.105:20201028-060947.log (text/plain), 24.01 KB, created by Toralf Förster on 2020-10-28 08:32:23 UTC

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Creator: Toralf Förster

Created: 2020-10-28 08:32:23 UTC

Size: 24.01 KB

patch

obsolete

> * Package:    sci-libs/cifparse-obj-7.105
> * Repository: gentoo
> * Maintainer: sci-chemistry@gentoo.org
> * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
> * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
>>>> Unpacking source...
>>>> Unpacking cifparse-obj-v7.105-prod-src.tar.gz to /var/tmp/portage/sci-libs/cifparse-obj-7.105/work
>>>> Source unpacked in /var/tmp/portage/sci-libs/cifparse-obj-7.105/work
>>>> Preparing source in /var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src ...
> * Applying cifparse-obj-7.105-makefile.patch ...
> [ ok ]
> * Applying cifparse-obj-7.025-gcc5_6.patch ...
> [ ok ]
>>>> Source prepared.
>>>> Configuring source in /var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src ...
>>>> Source configured.
>>>> Compiling source in /var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src ...
>make -j1 -j1 'C_OPT=-O2 -pipe -march=native -fno-diagnostics-color  -falign-functions=32:25:16' 'CXX_OPT=-O2 -pipe -march=native -fno-diagnostics-color  -falign-functions=32:25:16' 
>
>------------------------------------------------------------
>**** Making etc ****
>------------------------------------------------------------
>Using platform specific configuration for system: gnu2
>Platform configuration done.
>
>------------------------------------------------------------
>**** Making common ****
>------------------------------------------------------------
>make[1]: Entering directory '/var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src/common'
>g++ -O -ansi  -DINCL_TEMPLATE_SRC -Wall  -I./include -I../include  -c src/RcsbPlatform.C -o ./obj/RcsbPlatform.o
>g++ -O -ansi  -DINCL_TEMPLATE_SRC -Wall  -I./include -I../include  -c src/RcsbFile.C -o ./obj/RcsbFile.o
>g++ -O -ansi  -DINCL_TEMPLATE_SRC -Wall  -I./include -I../include  -c src/BlockIO.C -o ./obj/BlockIO.o
>g++ -O -ansi  -DINCL_TEMPLATE_SRC -Wall  -I./include -I../include  -c src/Serializer.C -o ./obj/Serializer.o
>g++ -O -ansi  -DINCL_TEMPLATE_SRC -Wall  -I./include -I../include  -c src/GenString.C -o ./obj/GenString.o
>src/GenString.C: In static member function âstatic bool String::IsNumber(const string&)â:
>src/GenString.C:674:12: warning: catching polymorphic type âclass std::exceptionâ by value [-Wcatch-value=]
>  674 |     catch (exception)
>      |            ^~~~~~~~~
>g++ -O -ansi  -DINCL_TEMPLATE_SRC -Wall  -I./include -I../include  -c src/CifString.C -o ./obj/CifString.o
>g++ -O -ansi  -DINCL_TEMPLATE_SRC -Wall  -I./include -I../include  -c src/GenCont.C -o ./obj/GenCont.o
>g++ -O -ansi  -DINCL_TEMPLATE_SRC -Wall  -I./include -I../include  -c src/Exceptions.C -o ./obj/Exceptions.o
>g++ -O -ansi  -DINCL_TEMPLATE_SRC -Wall  -I./include -I../include  -c src/DataInfo.C -o ./obj/DataInfo.o
>g++ -O -ansi  -DINCL_TEMPLATE_SRC -Wall  -I./include -I../include  -c src/mapped_vector.C -o ./obj/mapped_vector.o
>g++ -O -ansi  -DINCL_TEMPLATE_SRC -Wall  -I./include -I../include  -c src/mapped_ptr_vector.C -o ./obj/mapped_ptr_vector.o
>a - RcsbPlatform.o
>a - RcsbFile.o
>a - BlockIO.o
>a - Serializer.o
>a - GenString.o
>a - CifString.o
>a - GenCont.o
>a - Exceptions.o
>a - DataInfo.o
>a - mapped_vector.o
>a - mapped_ptr_vector.o
>true lib/common.a
>lib/common.a  is up to date.
>../etc/cifinstall -m 0444  ./lib/common.a ../lib
>x - RcsbPlatform.o
>x - RcsbFile.o
>x - BlockIO.o
>x - Serializer.o
>x - GenString.o
>x - CifString.o
>x - GenCont.o
>x - Exceptions.o
>x - DataInfo.o
>x - mapped_vector.o
>x - mapped_ptr_vector.o
>x - RcsbPlatform.o
>x - RcsbFile.o
>x - BlockIO.o
>x - Serializer.o
>x - GenString.o
>x - CifString.o
>x - GenCont.o
>x - Exceptions.o
>x - DataInfo.o
>x - mapped_vector.o
>x - mapped_ptr_vector.o
>a - BlockIO.o
>a - CifString.o
>a - DataInfo.o
>a - Exceptions.o
>a - GenCont.o
>a - GenString.o
>a - RcsbFile.o
>a - RcsbPlatform.o
>a - Serializer.o
>a - mapped_ptr_vector.o
>a - mapped_vector.o
>../etc/cifinstall -m 0444  ./lib/all.a ../lib
>make[1]: Leaving directory '/var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src/common'
>
>------------------------------------------------------------
>**** Making tables ****
>------------------------------------------------------------
>make[1]: Entering directory '/var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src/tables'
>g++ -O -ansi  -DINCL_TEMPLATE_SRC -Wall  -I./include -I../include  -c src/TTable.C -o ./obj/TTable.o
>g++ -O -ansi  -DINCL_TEMPLATE_SRC -Wall  -I./include -I../include  -c src/ITTable.C -o ./obj/ITTable.o
>src/ITTable.C: In member function âvoid ITTable::AppendToColumn(unsigned int, const string&)â:
>src/ITTable.C:304:16: warning: catching polymorphic type âclass AlreadyExistsExceptionâ by value [-Wcatch-value=]
>  304 |         catch (AlreadyExistsException)
>      |                ^~~~~~~~~~~~~~~~~~~~~~
>src/ITTable.C: In member function âvoid ITTable::ClearColumn(unsigned int)â:
>src/ITTable.C:379:12: warning: catching polymorphic type âclass AlreadyExistsExceptionâ by value [-Wcatch-value=]
>  379 |     catch (AlreadyExistsException)
>      |            ^~~~~~~~~~~~~~~~~~~~~~
>src/ITTable.C: In member function âunsigned int ITTable::InsertRow(unsigned int, const std::vector<std::__cxx11::basic_string<char> >&)â:
>src/ITTable.C:461:16: warning: catching polymorphic type âclass AlreadyExistsExceptionâ by value [-Wcatch-value=]
>  461 |         catch (AlreadyExistsException)
>      |                ^~~~~~~~~~~~~~~~~~~~~~
>src/ITTable.C: In member function âvoid ITTable::FillRow(unsigned int, const std::vector<std::__cxx11::basic_string<char> >&)â:
>src/ITTable.C:497:12: warning: catching polymorphic type âclass AlreadyExistsExceptionâ by value [-Wcatch-value=]
>  497 |     catch (AlreadyExistsException)
>      |            ^~~~~~~~~~~~~~~~~~~~~~
>src/ITTable.C: In member function âvoid ITTable::ClearRow(unsigned int)â:
>src/ITTable.C:574:12: warning: catching polymorphic type âclass AlreadyExistsExceptionâ by value [-Wcatch-value=]
>  574 |     catch (AlreadyExistsException)
>      |            ^~~~~~~~~~~~~~~~~~~~~~
>src/ITTable.C: In member function âvoid ITTable::FillColumn(unsigned int, std::vector<std::__cxx11::basic_string<char> >::const_iterator, std::vector<std::__cxx11::basic_string<char> >::const_iterator)â:
>src/ITTable.C:1780:12: warning: catching polymorphic type âclass AlreadyExistsExceptionâ by value [-Wcatch-value=]
> 1780 |     catch (AlreadyExistsException)
>      |            ^~~~~~~~~~~~~~~~~~~~~~
>src/ITTable.C: In member function âvoid ITTable::AppendToColumn(unsigned int, const std::vector<std::__cxx11::basic_string<char> >&)â:
>src/ITTable.C:1849:16: warning: catching polymorphic type âclass AlreadyExistsExceptionâ by value [-Wcatch-value=]
> 1849 |         catch (AlreadyExistsException)
>      |                ^~~~~~~~~~~~~~~~~~~~~~
>src/ITTable.C: In member function âint ITTable::UpdateCell(const string&, unsigned int, unsigned int)â:
>src/ITTable.C:1894:12: warning: catching polymorphic type âclass AlreadyExistsExceptionâ by value [-Wcatch-value=]
> 1894 |     catch (AlreadyExistsException)
>      |            ^~~~~~~~~~~~~~~~~~~~~~
>g++ -O -ansi  -DINCL_TEMPLATE_SRC -Wall  -I./include -I../include  -c src/ISTable.C -o ./obj/ISTable.o
>src/ISTable.C: In member function âbool ISTable::IsColumnPresent(const string&)â:
>src/ISTable.C:363:12: warning: catching polymorphic type âclass NotFoundExceptionâ by value [-Wcatch-value=]
>  363 |     catch (NotFoundException)
>      |            ^~~~~~~~~~~~~~~~~
>src/ISTable.C: In member function âunsigned int ISTable::InsertRow(unsigned int, const std::vector<std::__cxx11::basic_string<char> >&)â:
>src/ISTable.C:784:20: warning: catching polymorphic type âclass AlreadyExistsExceptionâ by value [-Wcatch-value=]
>  784 |             catch (AlreadyExistsException)
>      |                    ^~~~~~~~~~~~~~~~~~~~~~
>src/ISTable.C: In function âstd::ostream& operator<<(std::ostream&, const ISTable&)â:
>src/ISTable.C:1961:20: warning: catching polymorphic type âclass std::out_of_rangeâ by value [-Wcatch-value=]
> 1961 |             catch (out_of_range)
>      |                    ^~~~~~~~~~~~
>g++ -O -ansi  -DINCL_TEMPLATE_SRC -Wall  -I./include -I../include  -c src/TableFile.C -o ./obj/TableFile.o
>src/TableFile.C: In member function âstd::string TableFile::GetFirstBlockName()â:
>src/TableFile.C:609:12: warning: catching polymorphic type âclass std::out_of_rangeâ by value [-Wcatch-value=]
>  609 |     catch (out_of_range)
>      |            ^~~~~~~~~~~~
>a - TTable.o
>a - ITTable.o
>a - ISTable.o
>a - TableFile.o
>true lib/tables.a
>lib/tables.a  is up to date.
>../etc/cifinstall -m 0444  ./lib/tables.a  ../lib
>x - BlockIO.o
>x - CifString.o
>x - DataInfo.o
>x - Exceptions.o
>x - GenCont.o
>x - GenString.o
>x - RcsbFile.o
>x - RcsbPlatform.o
>x - Serializer.o
>x - mapped_ptr_vector.o
>x - mapped_vector.o
>x - TTable.o
>x - ITTable.o
>x - ISTable.o
>x - TableFile.o
>a - BlockIO.o
>a - CifString.o
>a - DataInfo.o
>a - Exceptions.o
>a - GenCont.o
>a - GenString.o
>a - ISTable.o
>a - ITTable.o
>a - RcsbFile.o
>a - RcsbPlatform.o
>a - Serializer.o
>a - TTable.o
>a - TableFile.o
>a - mapped_ptr_vector.o
>a - mapped_vector.o
>../etc/cifinstall -m 0444  ./lib/all.a ../lib
>make[1]: Leaving directory '/var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src/tables'
>
>------------------------------------------------------------
>**** Making regex ****
>------------------------------------------------------------
>make[1]: Entering directory '/var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src/regex'
>gcc -O -Wall   -I./include -I../include   -DPOSIX_MISTAKE -c src/regcomp.c -o ./obj/regcomp.o
>src/regcomp.c: In function âp_ereâ:
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:205:3: note: in expansion of macro âREQUIREâ
>  205 |   REQUIRE(HERE() != conc, REG_EMPTY); /* require nonempty */
>      |   ^~~~~~~
>src/regcomp.c: In function âp_ere_expâ:
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:252:3: note: in expansion of macro âREQUIREâ
>  252 |   REQUIRE(MORE(), REG_EPAREN);
>      |   ^~~~~~~
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:56:24: note: in expansion of macro âREQUIREâ
>   56 | #define MUSTEAT(c, e) (REQUIRE(MORE() && GETNEXT() == (c), e))
>      |                        ^~~~~~~
>src/regcomp.c:265:3: note: in expansion of macro âMUSTEATâ
>  265 |   MUSTEAT(')', REG_EPAREN);
>      |   ^~~~~~~
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:308:3: note: in expansion of macro âREQUIREâ
>  308 |   REQUIRE(MORE(), REG_EESCAPE);
>      |   ^~~~~~~
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:313:3: note: in expansion of macro âREQUIREâ
>  313 |   REQUIRE(!MORE() || !isdigit(PEEK()), REG_BADRPT);
>      |   ^~~~~~~
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:329:2: note: in expansion of macro âREQUIREâ
>  329 |  REQUIRE(!wascaret, REG_BADRPT);
>      |  ^~~~~~~
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:356:5: note: in expansion of macro âREQUIREâ
>  356 |     REQUIRE(count <= count2, REG_BADBR);
>      |     ^~~~~~~
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:365:4: note: in expansion of macro âREQUIREâ
>  365 |    REQUIRE(MORE(), REG_EBRACE);
>      |    ^~~~~~~
>src/regcomp.c: In function âp_strâ:
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:388:2: note: in expansion of macro âREQUIREâ
>  388 |  REQUIRE(MORE(), REG_EMPTY);
>      |  ^~~~~~~
>src/regcomp.c: In function âp_breâ:
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:431:2: note: in expansion of macro âREQUIREâ
>  431 |  REQUIRE(HERE() != start, REG_EMPTY); /* require nonempty */
>      |  ^~~~~~~
>src/regcomp.c: In function âp_simp_reâ:
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:456:3: note: in expansion of macro âREQUIREâ
>  456 |   REQUIRE(MORE(), REG_EESCAPE);
>      |   ^~~~~~~
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:486:3: note: in expansion of macro âREQUIREâ
>  486 |   REQUIRE(EATTWO('\\', ')'), REG_EPAREN);
>      |   ^~~~~~~
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:516:3: note: in expansion of macro âREQUIREâ
>  516 |   REQUIRE(starordinary, REG_BADRPT);
>      |   ^~~~~~~
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:534:5: note: in expansion of macro âREQUIREâ
>  534 |     REQUIRE(count <= count2, REG_BADBR);
>      |     ^~~~~~~
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:543:4: note: in expansion of macro âREQUIREâ
>  543 |    REQUIRE(MORE(), REG_EBRACE);
>      |    ^~~~~~~
>src/regcomp.c: In function âp_countâ:
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:568:2: note: in expansion of macro âREQUIREâ
>  568 |  REQUIRE(ndigits > 0 && count <= DUPMAX, REG_BADBR);
>      |  ^~~~~~~
>src/regcomp.c: In function âp_bracketâ:
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:56:24: note: in expansion of macro âREQUIREâ
>   56 | #define MUSTEAT(c, e) (REQUIRE(MORE() && GETNEXT() == (c), e))
>      |                        ^~~~~~~
>src/regcomp.c:608:2: note: in expansion of macro âMUSTEATâ
>  608 |  MUSTEAT(']', REG_EBRACK);
>      |  ^~~~~~~
>src/regcomp.c: In function âp_b_termâ:
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:679:3: note: in expansion of macro âREQUIREâ
>  679 |   REQUIRE(MORE(), REG_EBRACK);
>      |   ^~~~~~~
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:681:3: note: in expansion of macro âREQUIREâ
>  681 |   REQUIRE(c != '-' && c != ']', REG_ECTYPE);
>      |   ^~~~~~~
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:683:3: note: in expansion of macro âREQUIREâ
>  683 |   REQUIRE(MORE(), REG_EBRACK);
>      |   ^~~~~~~
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:684:3: note: in expansion of macro âREQUIREâ
>  684 |   REQUIRE(EATTWO(':', ']'), REG_ECTYPE);
>      |   ^~~~~~~
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:688:3: note: in expansion of macro âREQUIREâ
>  688 |   REQUIRE(MORE(), REG_EBRACK);
>      |   ^~~~~~~
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:690:3: note: in expansion of macro âREQUIREâ
>  690 |   REQUIRE(c != '-' && c != ']', REG_ECOLLATE);
>      |   ^~~~~~~
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:692:3: note: in expansion of macro âREQUIREâ
>  692 |   REQUIRE(MORE(), REG_EBRACK);
>      |   ^~~~~~~
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:693:3: note: in expansion of macro âREQUIREâ
>  693 |   REQUIRE(EATTWO('=', ']'), REG_ECOLLATE);
>      |   ^~~~~~~
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:708:3: note: in expansion of macro âREQUIREâ
>  708 |   REQUIRE(start <= finish, REG_ERANGE);
>      |   ^~~~~~~
>src/regcomp.c: In function âp_b_symbolâ:
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:776:2: note: in expansion of macro âREQUIREâ
>  776 |  REQUIRE(MORE(), REG_EBRACK);
>      |  ^~~~~~~
>src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value]
>   54 | #define REQUIRE(co, e) ((co) || SETERROR(e))
>      |                              ^~
>src/regcomp.c:782:2: note: in expansion of macro âREQUIREâ
>  782 |  REQUIRE(EATTWO('.', ']'), REG_ECOLLATE);
>      |  ^~~~~~~
>gcc -O -Wall   -I./include -I../include   -DPOSIX_MISTAKE -c src/regexec.c -o ./obj/regexec.o
>In file included from src/regexec.c:46:
>src/engine.c: In function âsdissectâ:
>src/engine.c:251:17: warning: variable âdpâ set but not used [-Wunused-but-set-variable]
>  251 |  register char *dp;
>      |                 ^~
>In file included from src/regexec.c:95:
>src/engine.c: In function âldissectâ:
>src/engine.c:251:17: warning: variable âdpâ set but not used [-Wunused-but-set-variable]
>  251 |  register char *dp;
>      |                 ^~
>gcc -O -Wall   -I./include -I../include   -DPOSIX_MISTAKE -c src/regerror.c -o ./obj/regerror.o
>gcc -O -Wall   -I./include -I../include   -DPOSIX_MISTAKE -c src/regfree.c -o ./obj/regfree.o
>a - regcomp.o
>a - regexec.o
>a - regerror.o
>a - regfree.o
>true lib/regex.a
>lib/regex.a  is up to date.
>../etc/cifinstall -m 0444  ./lib/regex.a ../lib
>x - BlockIO.o
>x - CifString.o
>x - DataInfo.o
>x - Exceptions.o
>x - GenCont.o
>x - GenString.o
>x - ISTable.o
>x - ITTable.o
>x - RcsbFile.o
>x - RcsbPlatform.o
>x - Serializer.o
>x - TTable.o
>x - TableFile.o
>x - mapped_ptr_vector.o
>x - mapped_vector.o
>x - regcomp.o
>x - regexec.o
>x - regerror.o
>x - regfree.o
>a - BlockIO.o
>a - CifString.o
>a - DataInfo.o
>a - Exceptions.o
>a - GenCont.o
>a - GenString.o
>a - ISTable.o
>a - ITTable.o
>a - RcsbFile.o
>a - RcsbPlatform.o
>a - Serializer.o
>a - TTable.o
>a - TableFile.o
>a - mapped_ptr_vector.o
>a - mapped_vector.o
>a - regcomp.o
>a - regerror.o
>a - regexec.o
>a - regfree.o
>../etc/cifinstall -m 0444  ./lib/all.a ../lib
>make[1]: Leaving directory '/var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src/regex'
>
>------------------------------------------------------------
>**** Making cif-file ****
>------------------------------------------------------------
>make[1]: Entering directory '/var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src/cif-file'
>g++ -O -ansi  -DINCL_TEMPLATE_SRC -Wall  -I./include -I../include  -c src/CifFile.C -o ./obj/CifFile.o
>src/CifFile.C: In member function âint CifFile::CheckCellRange(const string&, const string&, const std::vector<std::__cxx11::basic_string<char> >&, const std::vector<std::__cxx11::basic_string<char> >&)â:
>src/CifFile.C:2638:12: warning: catching polymorphic type âclass std::exceptionâ by value [-Wcatch-value=]
> 2638 |     catch (exception)
>      |            ^~~~~~~~~
>g++ -O -ansi  -DINCL_TEMPLATE_SRC -Wall  -I./include -I../include  -c src/DicFile.C -o ./obj/DicFile.o
>g++ -O -ansi  -DINCL_TEMPLATE_SRC -Wall  -I./include -I../include  -c src/ParentChild.C -o ./obj/ParentChild.o
>g++ -O -ansi  -DINCL_TEMPLATE_SRC -Wall  -I./include -I../include  -c src/CifParentChild.C -o ./obj/CifParentChild.o
>g++ -O -ansi  -DINCL_TEMPLATE_SRC -Wall  -I./include -I../include  -c src/CifDataInfo.C -o ./obj/CifDataInfo.o
>g++ -O -ansi  -DINCL_TEMPLATE_SRC -Wall  -I./include -I../include  -c src/CifExcept.C -o ./obj/CifExcept.o
>a - CifFile.o
>a - DicFile.o
>a - ParentChild.o
>a - CifParentChild.o
>a - CifDataInfo.o
>a - CifExcept.o
>true lib/cif-file.a
>lib/cif-file.a  is up to date.
>../etc/cifinstall -m 0444  ./lib/cif-file.a  ../lib
>x - BlockIO.o
>x - CifString.o
>x - DataInfo.o
>x - Exceptions.o
>x - GenCont.o
>x - GenString.o
>x - ISTable.o
>x - ITTable.o
>x - RcsbFile.o
>x - RcsbPlatform.o
>x - Serializer.o
>x - TTable.o
>x - TableFile.o
>x - mapped_ptr_vector.o
>x - mapped_vector.o
>x - regcomp.o
>x - regerror.o
>x - regexec.o
>x - regfree.o
>x - CifFile.o
>x - DicFile.o
>x - ParentChild.o
>x - CifParentChild.o
>x - CifDataInfo.o
>x - CifExcept.o
>a - BlockIO.o
>a - CifDataInfo.o
>a - CifExcept.o
>a - CifFile.o
>a - CifParentChild.o
>a - CifString.o
>a - DataInfo.o
>a - DicFile.o
>a - Exceptions.o
>a - GenCont.o
>a - GenString.o
>a - ISTable.o
>a - ITTable.o
>a - ParentChild.o
>a - RcsbFile.o
>a - RcsbPlatform.o
>a - Serializer.o
>a - TTable.o
>a - TableFile.o
>a - mapped_ptr_vector.o
>a - mapped_vector.o
>a - regcomp.o
>a - regerror.o
>a - regexec.o
>a - regfree.o
>../etc/cifinstall -m 0444  ./lib/all.a ../lib
>make[1]: Leaving directory '/var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src/cif-file'
>
>------------------------------------------------------------
>**** Making cif-parser ****
>------------------------------------------------------------
>make[1]: Entering directory '/var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src/cif-parser'
>g++ -O -ansi  -DINCL_TEMPLATE_SRC -Wall  -I./include -I../include   -c src/CifFileReadDef.C -o ./obj/CifFileReadDef.o
>mv src/CifParser.tab.c src/CifParser.c
>mv src/CifParser.tab.h src/CifParser.h
>gcc -O -Wall   -I./include -I../include   -c src/CifParser.c -o obj/CifParser.o 
>src/CifParser.c:115:10: fatal error: CifParser.tab.h: No such file or directory
>  115 | #include "CifParser.tab.h"
>      |          ^~~~~~~~~~~~~~~~~
>compilation terminated.
>make[1]: *** [Makefile:182: obj/CifParser.o] Error 1
>make[1]: Leaving directory '/var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src/cif-parser'
>make: *** [Makefile:30: compile] Error 1
> * ERROR: sci-libs/cifparse-obj-7.105::gentoo failed (compile phase):
> *   emake failed
> * 
> * If you need support, post the output of `emerge --info '=sci-libs/cifparse-obj-7.105::gentoo'`,
> * the complete build log and the output of `emerge -pqv '=sci-libs/cifparse-obj-7.105::gentoo'`.
> * The complete build log is located at '/var/log/portage/sci-libs:cifparse-obj-7.105:20201028-060947.log'.
> * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-libs/cifparse-obj-7.105/temp/build.log'.
> * The ebuild environment file is located at '/var/tmp/portage/sci-libs/cifparse-obj-7.105/temp/environment'.
> * Working directory: '/var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src'
> * S: '/var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src'

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Attachments on bug 751550: 668912 | 668915 | 668918 | 668921 | 668924 | 668927