* Package: sci-libs/cifparse-obj-7.105 * Repository: gentoo * Maintainer: sci-chemistry@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>> Unpacking source... >>> Unpacking cifparse-obj-v7.105-prod-src.tar.gz to /var/tmp/portage/sci-libs/cifparse-obj-7.105/work >>> Source unpacked in /var/tmp/portage/sci-libs/cifparse-obj-7.105/work >>> Preparing source in /var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src ... * Applying cifparse-obj-7.105-makefile.patch ... [ ok ] * Applying cifparse-obj-7.025-gcc5_6.patch ... [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src ... >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src ... make -j1 -j1 'C_OPT=-O2 -pipe -march=native -fno-diagnostics-color -falign-functions=32:25:16' 'CXX_OPT=-O2 -pipe -march=native -fno-diagnostics-color -falign-functions=32:25:16' ------------------------------------------------------------ **** Making etc **** ------------------------------------------------------------ Using platform specific configuration for system: gnu2 Platform configuration done. ------------------------------------------------------------ **** Making common **** ------------------------------------------------------------ make[1]: Entering directory '/var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src/common' g++ -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/RcsbPlatform.C -o ./obj/RcsbPlatform.o g++ -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/RcsbFile.C -o ./obj/RcsbFile.o g++ -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/BlockIO.C -o ./obj/BlockIO.o g++ -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/Serializer.C -o ./obj/Serializer.o g++ -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/GenString.C -o ./obj/GenString.o src/GenString.C: In static member function ‘static bool String::IsNumber(const string&)’: src/GenString.C:674:12: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=] 674 | catch (exception) | ^~~~~~~~~ g++ -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifString.C -o ./obj/CifString.o g++ -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/GenCont.C -o ./obj/GenCont.o g++ -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/Exceptions.C -o ./obj/Exceptions.o g++ -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/DataInfo.C -o ./obj/DataInfo.o g++ -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/mapped_vector.C -o ./obj/mapped_vector.o g++ -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/mapped_ptr_vector.C -o ./obj/mapped_ptr_vector.o a - RcsbPlatform.o a - RcsbFile.o a - BlockIO.o a - Serializer.o a - GenString.o a - CifString.o a - GenCont.o a - Exceptions.o a - DataInfo.o a - mapped_vector.o a - mapped_ptr_vector.o true lib/common.a lib/common.a is up to date. ../etc/cifinstall -m 0444 ./lib/common.a ../lib x - RcsbPlatform.o x - RcsbFile.o x - BlockIO.o x - Serializer.o x - GenString.o x - CifString.o x - GenCont.o x - Exceptions.o x - DataInfo.o x - mapped_vector.o x - mapped_ptr_vector.o x - RcsbPlatform.o x - RcsbFile.o x - BlockIO.o x - Serializer.o x - GenString.o x - CifString.o x - GenCont.o x - Exceptions.o x - DataInfo.o x - mapped_vector.o x - mapped_ptr_vector.o a - BlockIO.o a - CifString.o a - DataInfo.o a - Exceptions.o a - GenCont.o a - GenString.o a - RcsbFile.o a - RcsbPlatform.o a - Serializer.o a - mapped_ptr_vector.o a - mapped_vector.o ../etc/cifinstall -m 0444 ./lib/all.a ../lib make[1]: Leaving directory '/var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src/common' ------------------------------------------------------------ **** Making tables **** ------------------------------------------------------------ make[1]: Entering directory '/var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src/tables' g++ -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/TTable.C -o ./obj/TTable.o g++ -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/ITTable.C -o ./obj/ITTable.o src/ITTable.C: In member function ‘void ITTable::AppendToColumn(unsigned int, const string&)’: src/ITTable.C:304:16: warning: catching polymorphic type ‘class AlreadyExistsException’ by value [-Wcatch-value=] 304 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function ‘void ITTable::ClearColumn(unsigned int)’: src/ITTable.C:379:12: warning: catching polymorphic type ‘class AlreadyExistsException’ by value [-Wcatch-value=] 379 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function ‘unsigned int ITTable::InsertRow(unsigned int, const std::vector >&)’: src/ITTable.C:461:16: warning: catching polymorphic type ‘class AlreadyExistsException’ by value [-Wcatch-value=] 461 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function ‘void ITTable::FillRow(unsigned int, const std::vector >&)’: src/ITTable.C:497:12: warning: catching polymorphic type ‘class AlreadyExistsException’ by value [-Wcatch-value=] 497 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function ‘void ITTable::ClearRow(unsigned int)’: src/ITTable.C:574:12: warning: catching polymorphic type ‘class AlreadyExistsException’ by value [-Wcatch-value=] 574 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function ‘void ITTable::FillColumn(unsigned int, std::vector >::const_iterator, std::vector >::const_iterator)’: src/ITTable.C:1780:12: warning: catching polymorphic type ‘class AlreadyExistsException’ by value [-Wcatch-value=] 1780 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function ‘void ITTable::AppendToColumn(unsigned int, const std::vector >&)’: src/ITTable.C:1849:16: warning: catching polymorphic type ‘class AlreadyExistsException’ by value [-Wcatch-value=] 1849 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function ‘int ITTable::UpdateCell(const string&, unsigned int, unsigned int)’: src/ITTable.C:1894:12: warning: catching polymorphic type ‘class AlreadyExistsException’ by value [-Wcatch-value=] 1894 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ g++ -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/ISTable.C -o ./obj/ISTable.o src/ISTable.C: In member function ‘bool ISTable::IsColumnPresent(const string&)’: src/ISTable.C:363:12: warning: catching polymorphic type ‘class NotFoundException’ by value [-Wcatch-value=] 363 | catch (NotFoundException) | ^~~~~~~~~~~~~~~~~ src/ISTable.C: In member function ‘unsigned int ISTable::InsertRow(unsigned int, const std::vector >&)’: src/ISTable.C:784:20: warning: catching polymorphic type ‘class AlreadyExistsException’ by value [-Wcatch-value=] 784 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ src/ISTable.C: In function ‘std::ostream& operator<<(std::ostream&, const ISTable&)’: src/ISTable.C:1961:20: warning: catching polymorphic type ‘class std::out_of_range’ by value [-Wcatch-value=] 1961 | catch (out_of_range) | ^~~~~~~~~~~~ g++ -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/TableFile.C -o ./obj/TableFile.o src/TableFile.C: In member function ‘std::string TableFile::GetFirstBlockName()’: src/TableFile.C:609:12: warning: catching polymorphic type ‘class std::out_of_range’ by value [-Wcatch-value=] 609 | catch (out_of_range) | ^~~~~~~~~~~~ a - TTable.o a - ITTable.o a - ISTable.o a - TableFile.o true lib/tables.a lib/tables.a is up to date. ../etc/cifinstall -m 0444 ./lib/tables.a ../lib x - BlockIO.o x - CifString.o x - DataInfo.o x - Exceptions.o x - GenCont.o x - GenString.o x - RcsbFile.o x - RcsbPlatform.o x - Serializer.o x - mapped_ptr_vector.o x - mapped_vector.o x - TTable.o x - ITTable.o x - ISTable.o x - TableFile.o a - BlockIO.o a - CifString.o a - DataInfo.o a - Exceptions.o a - GenCont.o a - GenString.o a - ISTable.o a - ITTable.o a - RcsbFile.o a - RcsbPlatform.o a - Serializer.o a - TTable.o a - TableFile.o a - mapped_ptr_vector.o a - mapped_vector.o ../etc/cifinstall -m 0444 ./lib/all.a ../lib make[1]: Leaving directory '/var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src/tables' ------------------------------------------------------------ **** Making regex **** ------------------------------------------------------------ make[1]: Entering directory '/var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src/regex' gcc -O -Wall -I./include -I../include -DPOSIX_MISTAKE -c src/regcomp.c -o ./obj/regcomp.o src/regcomp.c: In function ‘p_ere’: src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:205:3: note: in expansion of macro ‘REQUIRE’ 205 | REQUIRE(HERE() != conc, REG_EMPTY); /* require nonempty */ | ^~~~~~~ src/regcomp.c: In function ‘p_ere_exp’: src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:252:3: note: in expansion of macro ‘REQUIRE’ 252 | REQUIRE(MORE(), REG_EPAREN); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:56:24: note: in expansion of macro ‘REQUIRE’ 56 | #define MUSTEAT(c, e) (REQUIRE(MORE() && GETNEXT() == (c), e)) | ^~~~~~~ src/regcomp.c:265:3: note: in expansion of macro ‘MUSTEAT’ 265 | MUSTEAT(')', REG_EPAREN); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:308:3: note: in expansion of macro ‘REQUIRE’ 308 | REQUIRE(MORE(), REG_EESCAPE); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:313:3: note: in expansion of macro ‘REQUIRE’ 313 | REQUIRE(!MORE() || !isdigit(PEEK()), REG_BADRPT); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:329:2: note: in expansion of macro ‘REQUIRE’ 329 | REQUIRE(!wascaret, REG_BADRPT); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:356:5: note: in expansion of macro ‘REQUIRE’ 356 | REQUIRE(count <= count2, REG_BADBR); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:365:4: note: in expansion of macro ‘REQUIRE’ 365 | REQUIRE(MORE(), REG_EBRACE); | ^~~~~~~ src/regcomp.c: In function ‘p_str’: src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:388:2: note: in expansion of macro ‘REQUIRE’ 388 | REQUIRE(MORE(), REG_EMPTY); | ^~~~~~~ src/regcomp.c: In function ‘p_bre’: src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:431:2: note: in expansion of macro ‘REQUIRE’ 431 | REQUIRE(HERE() != start, REG_EMPTY); /* require nonempty */ | ^~~~~~~ src/regcomp.c: In function ‘p_simp_re’: src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:456:3: note: in expansion of macro ‘REQUIRE’ 456 | REQUIRE(MORE(), REG_EESCAPE); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:486:3: note: in expansion of macro ‘REQUIRE’ 486 | REQUIRE(EATTWO('\\', ')'), REG_EPAREN); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:516:3: note: in expansion of macro ‘REQUIRE’ 516 | REQUIRE(starordinary, REG_BADRPT); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:534:5: note: in expansion of macro ‘REQUIRE’ 534 | REQUIRE(count <= count2, REG_BADBR); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:543:4: note: in expansion of macro ‘REQUIRE’ 543 | REQUIRE(MORE(), REG_EBRACE); | ^~~~~~~ src/regcomp.c: In function ‘p_count’: src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:568:2: note: in expansion of macro ‘REQUIRE’ 568 | REQUIRE(ndigits > 0 && count <= DUPMAX, REG_BADBR); | ^~~~~~~ src/regcomp.c: In function ‘p_bracket’: src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:56:24: note: in expansion of macro ‘REQUIRE’ 56 | #define MUSTEAT(c, e) (REQUIRE(MORE() && GETNEXT() == (c), e)) | ^~~~~~~ src/regcomp.c:608:2: note: in expansion of macro ‘MUSTEAT’ 608 | MUSTEAT(']', REG_EBRACK); | ^~~~~~~ src/regcomp.c: In function ‘p_b_term’: src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:679:3: note: in expansion of macro ‘REQUIRE’ 679 | REQUIRE(MORE(), REG_EBRACK); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:681:3: note: in expansion of macro ‘REQUIRE’ 681 | REQUIRE(c != '-' && c != ']', REG_ECTYPE); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:683:3: note: in expansion of macro ‘REQUIRE’ 683 | REQUIRE(MORE(), REG_EBRACK); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:684:3: note: in expansion of macro ‘REQUIRE’ 684 | REQUIRE(EATTWO(':', ']'), REG_ECTYPE); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:688:3: note: in expansion of macro ‘REQUIRE’ 688 | REQUIRE(MORE(), REG_EBRACK); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:690:3: note: in expansion of macro ‘REQUIRE’ 690 | REQUIRE(c != '-' && c != ']', REG_ECOLLATE); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:692:3: note: in expansion of macro ‘REQUIRE’ 692 | REQUIRE(MORE(), REG_EBRACK); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:693:3: note: in expansion of macro ‘REQUIRE’ 693 | REQUIRE(EATTWO('=', ']'), REG_ECOLLATE); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:708:3: note: in expansion of macro ‘REQUIRE’ 708 | REQUIRE(start <= finish, REG_ERANGE); | ^~~~~~~ src/regcomp.c: In function ‘p_b_symbol’: src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:776:2: note: in expansion of macro ‘REQUIRE’ 776 | REQUIRE(MORE(), REG_EBRACK); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:782:2: note: in expansion of macro ‘REQUIRE’ 782 | REQUIRE(EATTWO('.', ']'), REG_ECOLLATE); | ^~~~~~~ gcc -O -Wall -I./include -I../include -DPOSIX_MISTAKE -c src/regexec.c -o ./obj/regexec.o In file included from src/regexec.c:46: src/engine.c: In function ‘sdissect’: src/engine.c:251:17: warning: variable ‘dp’ set but not used [-Wunused-but-set-variable] 251 | register char *dp; | ^~ In file included from src/regexec.c:95: src/engine.c: In function ‘ldissect’: src/engine.c:251:17: warning: variable ‘dp’ set but not used [-Wunused-but-set-variable] 251 | register char *dp; | ^~ gcc -O -Wall -I./include -I../include -DPOSIX_MISTAKE -c src/regerror.c -o ./obj/regerror.o gcc -O -Wall -I./include -I../include -DPOSIX_MISTAKE -c src/regfree.c -o ./obj/regfree.o a - regcomp.o a - regexec.o a - regerror.o a - regfree.o true lib/regex.a lib/regex.a is up to date. ../etc/cifinstall -m 0444 ./lib/regex.a ../lib x - BlockIO.o x - CifString.o x - DataInfo.o x - Exceptions.o x - GenCont.o x - GenString.o x - ISTable.o x - ITTable.o x - RcsbFile.o x - RcsbPlatform.o x - Serializer.o x - TTable.o x - TableFile.o x - mapped_ptr_vector.o x - mapped_vector.o x - regcomp.o x - regexec.o x - regerror.o x - regfree.o a - BlockIO.o a - CifString.o a - DataInfo.o a - Exceptions.o a - GenCont.o a - GenString.o a - ISTable.o a - ITTable.o a - RcsbFile.o a - RcsbPlatform.o a - Serializer.o a - TTable.o a - TableFile.o a - mapped_ptr_vector.o a - mapped_vector.o a - regcomp.o a - regerror.o a - regexec.o a - regfree.o ../etc/cifinstall -m 0444 ./lib/all.a ../lib make[1]: Leaving directory '/var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src/regex' ------------------------------------------------------------ **** Making cif-file **** ------------------------------------------------------------ make[1]: Entering directory '/var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src/cif-file' g++ -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifFile.C -o ./obj/CifFile.o src/CifFile.C: In member function ‘int CifFile::CheckCellRange(const string&, const string&, const std::vector >&, const std::vector >&)’: src/CifFile.C:2638:12: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=] 2638 | catch (exception) | ^~~~~~~~~ g++ -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/DicFile.C -o ./obj/DicFile.o g++ -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/ParentChild.C -o ./obj/ParentChild.o g++ -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifParentChild.C -o ./obj/CifParentChild.o g++ -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifDataInfo.C -o ./obj/CifDataInfo.o g++ -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifExcept.C -o ./obj/CifExcept.o a - CifFile.o a - DicFile.o a - ParentChild.o a - CifParentChild.o a - CifDataInfo.o a - CifExcept.o true lib/cif-file.a lib/cif-file.a is up to date. ../etc/cifinstall -m 0444 ./lib/cif-file.a ../lib x - BlockIO.o x - CifString.o x - DataInfo.o x - Exceptions.o x - GenCont.o x - GenString.o x - ISTable.o x - ITTable.o x - RcsbFile.o x - RcsbPlatform.o x - Serializer.o x - TTable.o x - TableFile.o x - mapped_ptr_vector.o x - mapped_vector.o x - regcomp.o x - regerror.o x - regexec.o x - regfree.o x - CifFile.o x - DicFile.o x - ParentChild.o x - CifParentChild.o x - CifDataInfo.o x - CifExcept.o a - BlockIO.o a - CifDataInfo.o a - CifExcept.o a - CifFile.o a - CifParentChild.o a - CifString.o a - DataInfo.o a - DicFile.o a - Exceptions.o a - GenCont.o a - GenString.o a - ISTable.o a - ITTable.o a - ParentChild.o a - RcsbFile.o a - RcsbPlatform.o a - Serializer.o a - TTable.o a - TableFile.o a - mapped_ptr_vector.o a - mapped_vector.o a - regcomp.o a - regerror.o a - regexec.o a - regfree.o ../etc/cifinstall -m 0444 ./lib/all.a ../lib make[1]: Leaving directory '/var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src/cif-file' ------------------------------------------------------------ **** Making cif-parser **** ------------------------------------------------------------ make[1]: Entering directory '/var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src/cif-parser' g++ -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifFileReadDef.C -o ./obj/CifFileReadDef.o mv src/CifParser.tab.c src/CifParser.c mv src/CifParser.tab.h src/CifParser.h gcc -O -Wall -I./include -I../include -c src/CifParser.c -o obj/CifParser.o src/CifParser.c:115:10: fatal error: CifParser.tab.h: No such file or directory 115 | #include "CifParser.tab.h" | ^~~~~~~~~~~~~~~~~ compilation terminated. make[1]: *** [Makefile:182: obj/CifParser.o] Error 1 make[1]: Leaving directory '/var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src/cif-parser' make: *** [Makefile:30: compile] Error 1 * ERROR: sci-libs/cifparse-obj-7.105::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-libs/cifparse-obj-7.105::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-libs/cifparse-obj-7.105::gentoo'`. * The complete build log is located at '/var/log/portage/sci-libs:cifparse-obj-7.105:20201028-060947.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-libs/cifparse-obj-7.105/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-libs/cifparse-obj-7.105/temp/environment'. * Working directory: '/var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src' * S: '/var/tmp/portage/sci-libs/cifparse-obj-7.105/work/cifparse-obj-v7.105-prod-src'