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Gentoo's Bugzilla – Attachment 659961 Details for
Bug 742269
sci-libs/trilinos-12.18.1 : -- ERROR: Could not find the libraries for the TPL 'Scotch'!
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CMakeError.log
CMakeError.log (text/plain), 10.47 KB, created by
Toralf Förster
on 2020-09-13 07:19:11 UTC
(
hide
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Description:
CMakeError.log
Filename:
MIME Type:
Creator:
Toralf Förster
Created:
2020-09-13 07:19:11 UTC
Size:
10.47 KB
patch
obsolete
>Performing C++ SOURCE FILE Test FINITE_VALUE_HAVE_GLOBAL_ISNAN failed with the following output: >Change Dir: /var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/gmake cmTC_8f1f8/fast && /usr/bin/gmake -f CMakeFiles/cmTC_8f1f8.dir/build.make CMakeFiles/cmTC_8f1f8.dir/build >gmake[1]: Entering directory '/var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp' >Building CXX object CMakeFiles/cmTC_8f1f8.dir/src.cxx.o >/usr/bin/mpicxx -O2 -pipe -march=native -fno-diagnostics-color -falign-functions=32:25:16 -Wformat -Werror=format-security -std=c++11 -DFINITE_VALUE_HAVE_GLOBAL_ISNAN -O3 -DNDEBUG -o CMakeFiles/cmTC_8f1f8.dir/src.cxx.o -c /var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp/src.cxx >/var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp/src.cxx: In function âint main()â: >/var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp/src.cxx:6:3: error: âisnanâ was not declared in this scope; did you mean âstd::isnanâ? > 6 | isnan(x); > | ^~~~~ > | std::isnan >In file included from /var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp/src.cxx:2: >/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/include/g++-v10/cmath:632:5: note: âstd::isnanâ declared here > 632 | isnan(_Tp __x) > | ^~~~~ >gmake[1]: *** [CMakeFiles/cmTC_8f1f8.dir/build.make:85: CMakeFiles/cmTC_8f1f8.dir/src.cxx.o] Error 1 >gmake[1]: Leaving directory '/var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp' >gmake: *** [Makefile:140: cmTC_8f1f8/fast] Error 2 > > >Source file was: > >#include <cmath> >int main() >{ > double x = 1.0; > isnan(x); > return 0; >} > >Performing C++ SOURCE FILE Test FINITE_VALUE_HAVE_GLOBAL_ISINF failed with the following output: >Change Dir: /var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/gmake cmTC_66044/fast && /usr/bin/gmake -f CMakeFiles/cmTC_66044.dir/build.make CMakeFiles/cmTC_66044.dir/build >gmake[1]: Entering directory '/var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp' >Building CXX object CMakeFiles/cmTC_66044.dir/src.cxx.o >/usr/bin/mpicxx -O2 -pipe -march=native -fno-diagnostics-color -falign-functions=32:25:16 -Wformat -Werror=format-security -std=c++11 -DFINITE_VALUE_HAVE_GLOBAL_ISINF -O3 -DNDEBUG -o CMakeFiles/cmTC_66044.dir/src.cxx.o -c /var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp/src.cxx >/var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp/src.cxx: In function âint main()â: >/var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp/src.cxx:6:3: error: âisinfâ was not declared in this scope; did you mean âstd::isinfâ? > 6 | isinf(x); > | ^~~~~ > | std::isinf >In file included from /var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp/src.cxx:2: >/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/include/g++-v10/cmath:605:5: note: âstd::isinfâ declared here > 605 | isinf(_Tp __x) > | ^~~~~ >gmake[1]: *** [CMakeFiles/cmTC_66044.dir/build.make:85: CMakeFiles/cmTC_66044.dir/src.cxx.o] Error 1 >gmake[1]: Leaving directory '/var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp' >gmake: *** [Makefile:140: cmTC_66044/fast] Error 2 > > >Source file was: > >#include <cmath> >int main() >{ > double x = 1.0; > isinf(x); > return 0; >} > >Performing C++ SOURCE FILE Test HAS_TPL_BINUNTILS_STACKTRACE failed with the following output: >Change Dir: /var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/gmake cmTC_86477/fast && /usr/bin/gmake -f CMakeFiles/cmTC_86477.dir/build.make CMakeFiles/cmTC_86477.dir/build >gmake[1]: Entering directory '/var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp' >Building CXX object CMakeFiles/cmTC_86477.dir/src.cxx.o >/usr/bin/mpicxx -O2 -pipe -march=native -fno-diagnostics-color -falign-functions=32:25:16 -Wformat -Werror=format-security -std=c++11 -DHAS_TPL_BINUNTILS_STACKTRACE -O3 -DNDEBUG -o CMakeFiles/cmTC_86477.dir/src.cxx.o -c /var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp/src.cxx >In file included from /usr/include/bfd.h:10, > from /var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp/src.cxx:11: >/usr/include/x86_64-pc-linux-gnu/bfd.h:35:2: error: #error config.h must be included before this header > 35 | #error config.h must be included before this header > | ^~~~~ >/var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp/src.cxx: In function âvoid call_a_bunch_of_functions()â: >/var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp/src.cxx:41:31: error: âbfd_get_section_flagsâ was not declared in this scope; did you mean âbfd_set_section_flagsâ? > 41 | const int status_bfd_gsf = (bfd_get_section_flags(abfd, section) & SEC_ALLOC); > | ^~~~~~~~~~~~~~~~~~~~~ > | bfd_set_section_flags >/var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp/src.cxx:43:25: error: âbfd_get_section_vmaâ was not declared in this scope; did you mean âbfd_set_section_vmaâ? > 43 | bfd_vma section_vma = bfd_get_section_vma(abfd, section); > | ^~~~~~~~~~~~~~~~~~~ > | bfd_set_section_vma >/var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp/src.cxx:45:49: error: cannot convert âbfd*â to âconst asection*â {aka âconst bfd_section*â} > 45 | bfd_size_type section_size = bfd_section_size(abfd, section); > | ^~~~ > | | > | bfd* >In file included from /usr/include/bfd.h:10, > from /var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp/src.cxx:11: >/usr/include/x86_64-pc-linux-gnu/bfd.h:1205:35: note: initializing argument 1 of âbfd_size_type bfd_section_size(const asection*)â > 1205 | bfd_section_size (const asection *sec) > | ~~~~~~~~~~~~~~~~^~~ >gmake[1]: *** [CMakeFiles/cmTC_86477.dir/build.make:85: CMakeFiles/cmTC_86477.dir/src.cxx.o] Error 1 >gmake[1]: Leaving directory '/var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp' >gmake: *** [Makefile:140: cmTC_86477/fast] Error 2 > > >Source file was: > >#include <string> >#include <iostream> >#include <fstream> >#include <cstdlib> >#include <cstdarg> >#include <csignal> >#include <execinfo.h> >#include <cxxabi.h> >#include <link.h> >#include <bfd.h> > > >int shared_lib_callback(struct dl_phdr_info *info, > size_t size, void *_data) >{ > (void)info; > (void)size; > (void)_data; > return 0; >} > > >void process_section(bfd *abfd, asection *section, void *_data) >{} > > >void call_a_bunch_of_functions() >{ > > void **stacktrace_array = 0; > const size_t stacktrace_size = backtrace(stacktrace_array, 0); > > int status_demangle = 0; > char *filename_blob = 0; > char *d = abi::__cxa_demangle(filename_blob, 0, 0, &status_demangle); > > asection *section = 0; > bfd *abfd = 0; > > const int status_bfd_gsf = (bfd_get_section_flags(abfd, section) & SEC_ALLOC); > > bfd_vma section_vma = bfd_get_section_vma(abfd, section); > > bfd_size_type section_size = bfd_section_size(abfd, section); > > bfd_vma offset; > asymbol **symbol_table = 0; > unsigned int line; > > const char *filename=NULL, *function_name=NULL; > const int line_found = bfd_find_nearest_line(abfd, section, symbol_table, > offset, &filename, &function_name, &line); > > const int status_bfd_gff = (bfd_get_file_flags(abfd) & HAS_SYMS); > void **symbol_table_ptr = 0; > long n_symbols; > unsigned int symbol_size; > n_symbols = bfd_read_minisymbols(abfd, false, symbol_table_ptr, &symbol_size); > > abfd = bfd_openr(filename_blob, NULL); > > const int status_bfd_cf = bfd_check_format(abfd, bfd_archive); > > char **matching; > const int status_bfd_cfm = bfd_check_format_matches(abfd, bfd_object, &matching); > > void *data = 0; > bfd_map_over_sections(abfd, process_section, &data); > > bfd_close(abfd); > > struct match_data *match; > const int status_dl_iphdr = dl_iterate_phdr(shared_lib_callback, &(*match)); > >} > > >int main() >{ > call_a_bunch_of_functions(); > return 0; >} > >Performing C SOURCE FILE Test HAVE_SCOTCH_VERSION_6_0_3 failed with the following output: >Change Dir: /var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/gmake cmTC_02c81/fast && /usr/bin/gmake -f CMakeFiles/cmTC_02c81.dir/build.make CMakeFiles/cmTC_02c81.dir/build >gmake[1]: Entering directory '/var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp' >Building C object CMakeFiles/cmTC_02c81.dir/src.c.o >/usr/bin/mpicc -O2 -pipe -march=native -fno-diagnostics-color -falign-functions=32:25:16 -Wformat -Werror=format-security -DHAVE_SCOTCH_VERSION_6_0_3 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O3 -DNDEBUG -o CMakeFiles/cmTC_02c81.dir/src.c.o -c /var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp/src.c >/var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp/src.c:8:12: fatal error: scotch.h: No such file or directory > 8 | #include <scotch.h> > | ^~~~~~~~~~ >compilation terminated. >gmake[1]: *** [CMakeFiles/cmTC_02c81.dir/build.make:85: CMakeFiles/cmTC_02c81.dir/src.c.o] Error 1 >gmake[1]: Leaving directory '/var/tmp/portage/sci-libs/trilinos-12.18.1/work/trilinos-12.18.1_build/CMakeFiles/CMakeTmp' >gmake: *** [Makefile:140: cmTC_02c81/fast] Error 2 > > >Source file was: > > #include <stdio.h> > #include <stdint.h> >#ifdef TPL_ENABLE_MPI > #include <mpi.h> > #include <ptscotch.h> >#else > #include <scotch.h> >#endif > int main() > { > #if SCOTCH_VERSION > 6 > return 0; > #elif SCOTCH_VERSION == 6 && SCOTCH_RELEASE > 0 > return 0; > #elif SCOTCH_VERSION == 6 && SCOTCH_RELEASE == 0 && SCOTCH_PATCHLEVEL >= 3 > return 0; > #else > scotch_version_failure > #endif > } >
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