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Gentoo's Bugzilla – Attachment 659520 Details for
Bug 741646
sci-physics/sassena-1.4.2 fails to compile
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build.log
build.log (text/plain), 61.41 KB, created by
Agostino Sarubbo
on 2020-09-11 12:07:01 UTC
(
hide
)
Description:
build.log
Filename:
MIME Type:
Creator:
Agostino Sarubbo
Created:
2020-09-11 12:07:01 UTC
Size:
61.41 KB
patch
obsolete
> * Package: sci-physics/sassena-1.4.2 > * Repository: gentoo > * Maintainer: alexxy@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox test userpriv usersandbox > > >@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ >This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; >This ebuild was merged at the following commit: >https://github.com/gentoo-mirror/gentoo/commit/fa9a5beed80315fe633f89d04f6483daa3cf1c48 (Fri Sep 11 08:35:34 UTC 2020) >@@@@@ END @@@@@ > > > >emerge --info: >Portage 3.0.6 (python 3.8.5-final-0, default/linux/amd64/17.1, gcc-10.2.0, glibc-2.32-r1, 5.4.0-1021-aws x86_64) >================================================================= >System uname: Linux-5.4.0-1021-aws-x86_64-Intel-R-_Xeon-R-_Platinum_8175M_CPU_@_2.50GHz-with-glibc2.2.5 >KiB Mem: 64359960 total, 26115440 free >KiB Swap: 0 total, 0 free >Timestamp of repository gentoo: Fri, 11 Sep 2020 08:35:33 +0000 >sh bash 5.0_p18 >ld GNU ld (Gentoo 2.34 p6) 2.34.0 >app-shells/bash: 5.0_p18::gentoo >dev-lang/perl: 5.30.3-r1::gentoo >dev-lang/python: 2.7.18-r2::gentoo, 3.6.12::gentoo, 3.7.9::gentoo, 3.8.5::gentoo, 3.9.0_rc1::gentoo >dev-util/cmake: 3.18.2::gentoo >sys-apps/baselayout: 2.7::gentoo >sys-apps/openrc: 0.42.1::gentoo >sys-apps/sandbox: 2.20::gentoo >sys-devel/autoconf: 2.13-r1::gentoo, 2.69-r5::gentoo >sys-devel/automake: 1.16.2::gentoo >sys-devel/binutils: 2.34-r2::gentoo >sys-devel/gcc: 10.2.0-r1::gentoo >sys-devel/gcc-config: 2.3.2::gentoo >sys-devel/libtool: 2.4.6-r6::gentoo >sys-devel/make: 4.3::gentoo >sys-kernel/linux-headers: 5.8::gentoo (virtual/os-headers) >sys-libs/glibc: 2.32-r1::gentoo >Repositories: > >gentoo > location: /usr/portage > sync-type: rsync > sync-uri: rsync://rsync.gentoo.org/gentoo-portage > priority: -1000 > sync-rsync-extra-opts: > sync-rsync-verify-jobs: 1 > sync-rsync-verify-max-age: 24 > sync-rsync-verify-metamanifest: yes > >ACCEPT_KEYWORDS="amd64 ~amd64" >ACCEPT_LICENSE="* GPL-2" >CBUILD="x86_64-pc-linux-gnu" >CC="x86_64-pc-linux-gnu-clang" >CFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color" >CHOST="x86_64-pc-linux-gnu" >CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" >CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" >CXX="x86_64-pc-linux-gnu-clang++" >CXXFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color" >DISTDIR="/var/tmp/portage/sci-physics/sassena-1.4.2/distdir" >EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -b -k" >ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" >FCFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color" >FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg collision-protect config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" >FFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color" >GENTOO_MIRRORS="http://distfiles.gentoo.org" >LANG="C.UTF-8" >LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld" >MAKEOPTS="-j16 V=1" >PKGDIR="/root/.packages" >PORTAGE_CONFIGROOT="/" >PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" >PORTAGE_TMPDIR="/var/tmp" >USE="acl amd64 berkdb bzip2 cli crypt dri elogind fortran gdbm iconv ipv6 jumbo-build libglvnd libtirpc multilib native-symlinks ncurses nls nptl openmp pam pcre readline seccomp split-usr ssl tcpd test unicode xattr zlib" ABI_X86="64" ELIBC="glibc" KERNEL="linux" USERLAND="GNU" >Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS > > > >>>> Unpacking source... >>>> Unpacking sassena-1.4.2.tar.gz to /var/tmp/portage/sci-physics/sassena-1.4.2/work >>>> Source unpacked in /var/tmp/portage/sci-physics/sassena-1.4.2/work >>>> Preparing source in /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2 ... > * Applying sassena-1.4.2_cmake-remove-missing.patch ... > [ ok ] > * Applying sassena-1.4.2_uint32_t.patch ... > [ ok ] > * Applying sassena-1.4.2_link_boost_thread.patch ... > [ ok ] > * Hardcoded definition(s) removed in CMakeLists.txt: > * SET(CMAKE_BUILD_TYPE Debug) > * SET(CMAKE_BUILD_TYPE Release) >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2 ... >>>> Working in BUILD_DIR: "/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2_build" >cmake -C /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2_build/gentoo_toolchain.cmake /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2 >loading initial cache file /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2_build/gentoo_common_config.cmake >-- The C compiler identification is Clang 10.0.1 >-- The CXX compiler identification is Clang 10.0.1 >-- Detecting C compiler ABI info >-- Detecting C compiler ABI info - done >-- Check for working C compiler: /usr/lib/llvm/10/bin/x86_64-pc-linux-gnu-clang - skipped >-- Detecting C compile features >-- Detecting C compile features - done >-- Detecting CXX compiler ABI info >-- Detecting CXX compiler ABI info - done >-- Check for working CXX compiler: /usr/lib/llvm/10/bin/x86_64-pc-linux-gnu-clang++ - skipped >-- Detecting CXX compile features >-- Detecting CXX compile features - done >-- Found MPI_C: /usr/lib64/libmpi.so (found version "3.1") >-- Found MPI_CXX: /usr/lib64/libmpi_cxx.so (found version "3.1") >-- Found MPI: TRUE (found version "3.1") >DBG FFTW3_INCLUDE_DIR=/usr/include >DBG FFTW3_FFTW_LIBRARY=/usr/lib64/libfftw3.so >-- Found PkgConfig: x86_64-pc-linux-gnu-pkg-config (found version "1.7.3") >-- Checking for module 'lapack' >-- Found lapack, version 3.8.0 >-- Found LAPACK: /usr/lib64/liblapack.so >-- Found LibXml2: /usr/lib64/libxml2.so (found version "2.9.10") >-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.11") >CMake Warning at /usr/share/cmake/Modules/FindBoost.cmake:1187 (message): > New Boost version may have incorrect or missing dependencies and imported > targets >Call Stack (most recent call first): > /usr/share/cmake/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) > /usr/share/cmake/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) > cmake/CMakeLists.txt.depends:29 (FIND_PACKAGE) > cmake/CMakeLists.txt.shared:15 (INCLUDE) > CMakeLists.txt:24 (INCLUDE) > > >CMake Warning at /usr/share/cmake/Modules/FindBoost.cmake:1187 (message): > New Boost version may have incorrect or missing dependencies and imported > targets >Call Stack (most recent call first): > /usr/share/cmake/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) > /usr/share/cmake/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) > cmake/CMakeLists.txt.depends:29 (FIND_PACKAGE) > cmake/CMakeLists.txt.shared:15 (INCLUDE) > CMakeLists.txt:24 (INCLUDE) > > >CMake Warning at /usr/share/cmake/Modules/FindBoost.cmake:1187 (message): > New Boost version may have incorrect or missing dependencies and imported > targets >Call Stack (most recent call first): > /usr/share/cmake/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) > /usr/share/cmake/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) > cmake/CMakeLists.txt.depends:29 (FIND_PACKAGE) > cmake/CMakeLists.txt.shared:15 (INCLUDE) > CMakeLists.txt:24 (INCLUDE) > > >CMake Warning at /usr/share/cmake/Modules/FindBoost.cmake:1187 (message): > New Boost version may have incorrect or missing dependencies and imported > targets >Call Stack (most recent call first): > /usr/share/cmake/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) > /usr/share/cmake/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) > cmake/CMakeLists.txt.depends:29 (FIND_PACKAGE) > cmake/CMakeLists.txt.shared:15 (INCLUDE) > CMakeLists.txt:24 (INCLUDE) > > >CMake Warning at /usr/share/cmake/Modules/FindBoost.cmake:1187 (message): > New Boost version may have incorrect or missing dependencies and imported > targets >Call Stack (most recent call first): > /usr/share/cmake/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) > /usr/share/cmake/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) > cmake/CMakeLists.txt.depends:29 (FIND_PACKAGE) > cmake/CMakeLists.txt.shared:15 (INCLUDE) > CMakeLists.txt:24 (INCLUDE) > > >CMake Warning at /usr/share/cmake/Modules/FindBoost.cmake:1187 (message): > New Boost version may have incorrect or missing dependencies and imported > targets >Call Stack (most recent call first): > /usr/share/cmake/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) > /usr/share/cmake/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) > cmake/CMakeLists.txt.depends:29 (FIND_PACKAGE) > cmake/CMakeLists.txt.shared:15 (INCLUDE) > CMakeLists.txt:24 (INCLUDE) > > >CMake Warning at /usr/share/cmake/Modules/FindBoost.cmake:1187 (message): > New Boost version may have incorrect or missing dependencies and imported > targets >Call Stack (most recent call first): > /usr/share/cmake/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) > /usr/share/cmake/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) > cmake/CMakeLists.txt.depends:29 (FIND_PACKAGE) > cmake/CMakeLists.txt.shared:15 (INCLUDE) > CMakeLists.txt:24 (INCLUDE) > > >CMake Warning at /usr/share/cmake/Modules/FindBoost.cmake:1187 (message): > New Boost version may have incorrect or missing dependencies and imported > targets >Call Stack (most recent call first): > /usr/share/cmake/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) > /usr/share/cmake/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) > cmake/CMakeLists.txt.depends:29 (FIND_PACKAGE) > cmake/CMakeLists.txt.shared:15 (INCLUDE) > CMakeLists.txt:24 (INCLUDE) > > >CMake Warning at /usr/share/cmake/Modules/FindBoost.cmake:1187 (message): > New Boost version may have incorrect or missing dependencies and imported > targets >Call Stack (most recent call first): > /usr/share/cmake/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) > /usr/share/cmake/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) > cmake/CMakeLists.txt.depends:29 (FIND_PACKAGE) > cmake/CMakeLists.txt.shared:15 (INCLUDE) > CMakeLists.txt:24 (INCLUDE) > > >CMake Warning at /usr/share/cmake/Modules/FindBoost.cmake:1187 (message): > New Boost version may have incorrect or missing dependencies and imported > targets >Call Stack (most recent call first): > /usr/share/cmake/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) > /usr/share/cmake/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) > cmake/CMakeLists.txt.depends:29 (FIND_PACKAGE) > cmake/CMakeLists.txt.shared:15 (INCLUDE) > CMakeLists.txt:24 (INCLUDE) > > >-- Looking for pthread.h >-- Looking for pthread.h - found >-- Performing Test CMAKE_HAVE_LIBC_PTHREAD >-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed >-- Looking for pthread_create in pthreads >-- Looking for pthread_create in pthreads - not found >-- Looking for pthread_create in pthread >-- Looking for pthread_create in pthread - found >-- Found Threads: TRUE >-- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.42") found components: regex mpi thread serialization system filesystem program_options chrono date_time atomic >-- Searching for HDF5 >-- Found: /usr/lib64/libhdf5.so >-- HDF5 found:/usr/lib64/libhdf5_hl.so/usr/lib64/libhdf5.so >-- <<< Gentoo configuration >>> >Build type Gentoo >Install path /usr >Compiler flags: >C -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color >C++ -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color >Linker flags: >Executable -Wl,-Bdynamic -fPIC -Wall -fPIC >Module -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld >Shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld > >-- Configuring done >-- Generating done >-- Build files have been written to: /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2_build >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2 ... >>>> Working in BUILD_DIR: "/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2_build" >ninja -v -j16 -l0 >[1/61] /usr/lib/llvm/10/bin/x86_64-pc-linux-gnu-clang -Dsass_vendor_xdrfile_EXPORTS -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -fPIC -Wall -MD -MT CMakeFiles/sass_vendor_xdrfile.dir/vendor/xdrfile-1.1.1/src/xdrfile_xtc.c.o -MF CMakeFiles/sass_vendor_xdrfile.dir/vendor/xdrfile-1.1.1/src/xdrfile_xtc.c.o.d -o CMakeFiles/sass_vendor_xdrfile.dir/vendor/xdrfile-1.1.1/src/xdrfile_xtc.c.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/src/xdrfile_xtc.c >/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/src/xdrfile_xtc.c:50:6: warning: unused variable 'i' [-Wunused-variable] > int i,j,result; > ^ >/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/src/xdrfile_xtc.c:50:8: warning: unused variable 'j' [-Wunused-variable] > int i,j,result; > ^ >2 warnings generated. >[2/61] /usr/lib/llvm/10/bin/x86_64-pc-linux-gnu-clang -Dsass_vendor_xdrfile_EXPORTS -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -fPIC -Wall -MD -MT CMakeFiles/sass_vendor_xdrfile.dir/vendor/xdrfile-1.1.1/src/xdrfile_trr.c.o -MF CMakeFiles/sass_vendor_xdrfile.dir/vendor/xdrfile-1.1.1/src/xdrfile_trr.c.o.d -o CMakeFiles/sass_vendor_xdrfile.dir/vendor/xdrfile-1.1.1/src/xdrfile_trr.c.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/src/xdrfile_trr.c >[3/61] /usr/bin/mpicxx -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -Wall -MD -MT CMakeFiles/s_stage.dir/src/common.cpp.o -MF CMakeFiles/s_stage.dir/src/common.cpp.o.d -o CMakeFiles/s_stage.dir/src/common.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/common.cpp >[4/61] /usr/bin/mpicxx -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -Wall -MD -MT CMakeFiles/s_maketnx.dir/src/common.cpp.o -MF CMakeFiles/s_maketnx.dir/src/common.cpp.o.d -o CMakeFiles/s_maketnx.dir/src/common.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/common.cpp >[5/61] /usr/bin/mpicxx -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -Wall -MD -MT CMakeFiles/unit_broadcast.dir/src/common.cpp.o -MF CMakeFiles/unit_broadcast.dir/src/common.cpp.o.d -o CMakeFiles/unit_broadcast.dir/src/common.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/common.cpp >[6/61] /usr/bin/mpicxx -Dsass_math_EXPORTS -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -fPIC -Wall -MD -MT CMakeFiles/sass_math.dir/src/math/coor3d.cpp.o -MF CMakeFiles/sass_math.dir/src/math/coor3d.cpp.o.d -o CMakeFiles/sass_math.dir/src/math/coor3d.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/math/coor3d.cpp >[7/61] /usr/bin/mpicxx -Dsass_sample_EXPORTS -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -fPIC -Wall -MD -MT CMakeFiles/sass_sample.dir/src/sample/atom.cpp.o -MF CMakeFiles/sass_sample.dir/src/sample/atom.cpp.o.d -o CMakeFiles/sass_sample.dir/src/sample/atom.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/sample/atom.cpp >[8/61] /usr/lib/llvm/10/bin/x86_64-pc-linux-gnu-clang -Dsass_vendor_xdrfile_EXPORTS -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -fPIC -Wall -MD -MT CMakeFiles/sass_vendor_xdrfile.dir/vendor/xdrfile-1.1.1/src/xdrfile.c.o -MF CMakeFiles/sass_vendor_xdrfile.dir/vendor/xdrfile-1.1.1/src/xdrfile.c.o.d -o CMakeFiles/sass_vendor_xdrfile.dir/vendor/xdrfile-1.1.1/src/xdrfile.c.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/src/xdrfile.c >/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/src/xdrfile.c:1088:52: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-int-float-conversion] > if ((float)maxint[0] - (float)minint[0] >= INT_MAX-2 || > ~~ ~~~~~~~^~ >/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/src/xdrfile.c:1089:49: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-int-float-conversion] > (float)maxint[1] - (float)minint[1] >= INT_MAX-2 || > ~~ ~~~~~~~^~ >/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/src/xdrfile.c:1090:49: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-int-float-conversion] > (float)maxint[2] - (float)minint[2] >= INT_MAX-2) { > ~~ ~~~~~~~^~ >/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/src/xdrfile.c:1575:52: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-int-float-conversion] > if ((float)maxint[0] - (float)minint[0] >= INT_MAX-2 || > ~~ ~~~~~~~^~ >/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/src/xdrfile.c:1576:49: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-int-float-conversion] > (float)maxint[1] - (float)minint[1] >= INT_MAX-2 || > ~~ ~~~~~~~^~ >/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/src/xdrfile.c:1577:49: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-int-float-conversion] > (float)maxint[2] - (float)minint[2] >= INT_MAX-2) { > ~~ ~~~~~~~^~ >6 warnings generated. >[9/61] : && /usr/lib/llvm/10/bin/x86_64-pc-linux-gnu-clang -fPIC -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld -shared -Wl,-soname,libsass_vendor_xdrfile.so -o libsass_vendor_xdrfile.so CMakeFiles/sass_vendor_xdrfile.dir/vendor/xdrfile-1.1.1/src/xdrfile.c.o CMakeFiles/sass_vendor_xdrfile.dir/vendor/xdrfile-1.1.1/src/xdrfile_xtc.c.o CMakeFiles/sass_vendor_xdrfile.dir/vendor/xdrfile-1.1.1/src/xdrfile_trr.c.o -lz && : >[10/61] /usr/bin/mpicxx -Dsass_decomposition_EXPORTS -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -fPIC -Wall -MD -MT CMakeFiles/sass_decomposition.dir/src/decomposition/assignment.cpp.o -MF CMakeFiles/sass_decomposition.dir/src/decomposition/assignment.cpp.o.d -o CMakeFiles/sass_decomposition.dir/src/decomposition/assignment.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/decomposition/assignment.cpp >[11/61] /usr/bin/mpicxx -Dsass_log_EXPORTS -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -fPIC -Wall -MD -MT CMakeFiles/sass_log.dir/src/log/log.cpp.o -MF CMakeFiles/sass_log.dir/src/log/log.cpp.o.d -o CMakeFiles/sass_log.dir/src/log/log.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/log/log.cpp >[12/61] : && /usr/bin/mpicxx -fPIC -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld -shared -Wl,-soname,libsass_log.so -o libsass_log.so CMakeFiles/sass_log.dir/src/log/log.cpp.o -lboost_regex-mt -lboost_mpi-mt -lboost_thread-mt -lpthread -lboost_serialization-mt -lboost_system-mt -lboost_filesystem-mt -lboost_program_options-mt -lboost_chrono-mt -lboost_date_time-mt -lboost_atomic-mt && : >[13/61] /usr/bin/mpicxx -Dsass_stager_EXPORTS -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -fPIC -Wall -MD -MT CMakeFiles/sass_stager.dir/src/stager/coordinate_writer.cpp.o -MF CMakeFiles/sass_stager.dir/src/stager/coordinate_writer.cpp.o.d -o CMakeFiles/sass_stager.dir/src/stager/coordinate_writer.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/stager/coordinate_writer.cpp >[14/61] /usr/bin/mpicxx -Dsass_sample_EXPORTS -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -fPIC -Wall -MD -MT CMakeFiles/sass_sample.dir/src/sample/atomselections.cpp.o -MF CMakeFiles/sass_sample.dir/src/sample/atomselections.cpp.o.d -o CMakeFiles/sass_sample.dir/src/sample/atomselections.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/sample/atomselections.cpp >[31mFAILED: [0mCMakeFiles/sass_sample.dir/src/sample/atomselections.cpp.o >/usr/bin/mpicxx -Dsass_sample_EXPORTS -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -fPIC -Wall -MD -MT CMakeFiles/sass_sample.dir/src/sample/atomselections.cpp.o -MF CMakeFiles/sass_sample.dir/src/sample/atomselections.cpp.o.d -o CMakeFiles/sass_sample.dir/src/sample/atomselections.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/sample/atomselections.cpp >In file included from /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include/sample/atomselection.hpp:21, > from /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include/sample/atomselections.hpp:13, > from /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/sample/atomselections.cpp:10: >/usr/include/boost/serialization/list.hpp: In function âvoid boost::serialization::load(Archive&, std::__cxx11::list<U, Allocator>&, unsigned int)â: >/usr/include/boost/serialization/list.hpp:53:33: error: âlibrary_version_typeâ in namespace âboost::serializationâ does not name a type; did you mean âitem_version_typeâ? > 53 | const boost::serialization::library_version_type library_version( > | ^~~~~~~~~~~~~~~~~~~~ > | item_version_type >/usr/include/boost/serialization/list.hpp:60:30: error: âlibrary_version_typeâ is not a member of âboost::serializationâ; did you mean âitem_version_typeâ? > 60 | if(boost::serialization::library_version_type(3) < library_version){ > | ^~~~~~~~~~~~~~~~~~~~ > | item_version_type >/usr/include/boost/serialization/list.hpp:60:56: error: âlibrary_versionâ was not declared in this scope > 60 | if(boost::serialization::library_version_type(3) < library_version){ > | ^~~~~~~~~~~~~~~ >/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/sample/atomselections.cpp: In destructor âAtomselections::~Atomselections()â: >/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/sample/atomselections.cpp:72:9: warning: deleting object of abstract class type âIAtomselectionâ which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor] > 72 | delete(i->second); > | ^~~~~~~~~~~~~~~~~ >[15/61] /usr/bin/mpicxx -Dsass_math_EXPORTS -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -fPIC -Wall -MD -MT CMakeFiles/sass_math.dir/src/math/smath.cpp.o -MF CMakeFiles/sass_math.dir/src/math/smath.cpp.o.d -o CMakeFiles/sass_math.dir/src/math/smath.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/math/smath.cpp >[16/61] /usr/bin/mpicxx -Dsass_sample_EXPORTS -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -fPIC -Wall -MD -MT CMakeFiles/sass_sample.dir/src/sample/atomselection.cpp.o -MF CMakeFiles/sass_sample.dir/src/sample/atomselection.cpp.o.d -o CMakeFiles/sass_sample.dir/src/sample/atomselection.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/sample/atomselection.cpp >[31mFAILED: [0mCMakeFiles/sass_sample.dir/src/sample/atomselection.cpp.o >/usr/bin/mpicxx -Dsass_sample_EXPORTS -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -fPIC -Wall -MD -MT CMakeFiles/sass_sample.dir/src/sample/atomselection.cpp.o -MF CMakeFiles/sass_sample.dir/src/sample/atomselection.cpp.o.d -o CMakeFiles/sass_sample.dir/src/sample/atomselection.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/sample/atomselection.cpp >In file included from /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include/sample/atomselection.hpp:21, > from /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/sample/atomselection.cpp:10: >/usr/include/boost/serialization/list.hpp: In function âvoid boost::serialization::load(Archive&, std::__cxx11::list<U, Allocator>&, unsigned int)â: >/usr/include/boost/serialization/list.hpp:53:33: error: âlibrary_version_typeâ in namespace âboost::serializationâ does not name a type; did you mean âitem_version_typeâ? > 53 | const boost::serialization::library_version_type library_version( > | ^~~~~~~~~~~~~~~~~~~~ > | item_version_type >/usr/include/boost/serialization/list.hpp:60:30: error: âlibrary_version_typeâ is not a member of âboost::serializationâ; did you mean âitem_version_typeâ? > 60 | if(boost::serialization::library_version_type(3) < library_version){ > | ^~~~~~~~~~~~~~~~~~~~ > | item_version_type >/usr/include/boost/serialization/list.hpp:60:56: error: âlibrary_versionâ was not declared in this scope > 60 | if(boost::serialization::library_version_type(3) < library_version){ > | ^~~~~~~~~~~~~~~ >[17/61] /usr/bin/mpicxx -Dsass_sample_EXPORTS -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -fPIC -Wall -MD -MT CMakeFiles/sass_sample.dir/src/sample/frame.cpp.o -MF CMakeFiles/sass_sample.dir/src/sample/frame.cpp.o.d -o CMakeFiles/sass_sample.dir/src/sample/frame.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/sample/frame.cpp >[18/61] /usr/bin/mpicxx -Dsass_sample_EXPORTS -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -fPIC -Wall -MD -MT CMakeFiles/sass_sample.dir/src/sample/coordinate_set.cpp.o -MF CMakeFiles/sass_sample.dir/src/sample/coordinate_set.cpp.o.d -o CMakeFiles/sass_sample.dir/src/sample/coordinate_set.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/sample/coordinate_set.cpp >[19/61] /usr/bin/mpicxx -Dsass_sample_EXPORTS -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -fPIC -Wall -MD -MT CMakeFiles/sass_sample.dir/src/sample/center_of_mass.cpp.o -MF CMakeFiles/sass_sample.dir/src/sample/center_of_mass.cpp.o.d -o CMakeFiles/sass_sample.dir/src/sample/center_of_mass.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/sample/center_of_mass.cpp >In file included from /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/sample/center_of_mass.cpp:14: >/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/../vendor/boost/numeric/bindings/lapack/gesvd.hpp: In function âint boost::numeric::bindings::lapack::gesvd(char, char, MatrA&, VecS&, MatrU&, MatrV&, VecW&)â: >/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/../vendor/boost/numeric/bindings/lapack/gesvd.hpp:298:65: warning: typedef âval_tâ locally defined but not used [-Wunused-local-typedefs] > 298 | typedef typename traits::matrix_traits<MatrA>::value_type val_t; > | ^~~~~ >/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/../vendor/boost/numeric/bindings/lapack/gesvd.hpp: In function âint boost::numeric::bindings::lapack::gesvd(char, char, MatrA&, VecS&, MatrU&, MatrV&, VecW&, VecRW&)â: >/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/../vendor/boost/numeric/bindings/lapack/gesvd.hpp:365:65: warning: typedef âval_tâ locally defined but not used [-Wunused-local-typedefs] > 365 | typedef typename traits::matrix_traits<MatrA>::value_type val_t; > | ^~~~~ >[20/61] /usr/bin/mpicxx -Dsass_sample_EXPORTS -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -fPIC -Wall -MD -MT CMakeFiles/sass_sample.dir/src/sample/atomselection_reader.cpp.o -MF CMakeFiles/sass_sample.dir/src/sample/atomselection_reader.cpp.o.d -o CMakeFiles/sass_sample.dir/src/sample/atomselection_reader.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/sample/atomselection_reader.cpp >[31mFAILED: [0mCMakeFiles/sass_sample.dir/src/sample/atomselection_reader.cpp.o >/usr/bin/mpicxx -Dsass_sample_EXPORTS -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -fPIC -Wall -MD -MT CMakeFiles/sass_sample.dir/src/sample/atomselection_reader.cpp.o -MF CMakeFiles/sass_sample.dir/src/sample/atomselection_reader.cpp.o.d -o CMakeFiles/sass_sample.dir/src/sample/atomselection_reader.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/sample/atomselection_reader.cpp >In file included from /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include/sample/atomselection_reader.hpp:21, > from /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/sample/atomselection_reader.cpp:10: >/usr/include/boost/serialization/list.hpp: In function âvoid boost::serialization::load(Archive&, std::__cxx11::list<U, Allocator>&, unsigned int)â: >/usr/include/boost/serialization/list.hpp:53:33: error: âlibrary_version_typeâ in namespace âboost::serializationâ does not name a type; did you mean âitem_version_typeâ? > 53 | const boost::serialization::library_version_type library_version( > | ^~~~~~~~~~~~~~~~~~~~ > | item_version_type >/usr/include/boost/serialization/list.hpp:60:30: error: âlibrary_version_typeâ is not a member of âboost::serializationâ; did you mean âitem_version_typeâ? > 60 | if(boost::serialization::library_version_type(3) < library_version){ > | ^~~~~~~~~~~~~~~~~~~~ > | item_version_type >/usr/include/boost/serialization/list.hpp:60:56: error: âlibrary_versionâ was not declared in this scope > 60 | if(boost::serialization::library_version_type(3) < library_version){ > | ^~~~~~~~~~~~~~~ >[21/61] /usr/bin/mpicxx -Dsass_decomposition_EXPORTS -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -fPIC -Wall -MD -MT CMakeFiles/sass_decomposition.dir/src/decomposition/decomposition_plan.cpp.o -MF CMakeFiles/sass_decomposition.dir/src/decomposition/decomposition_plan.cpp.o.d -o CMakeFiles/sass_decomposition.dir/src/decomposition/decomposition_plan.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/decomposition/decomposition_plan.cpp >In file included from /usr/include/boost/config/header_deprecated.hpp:18, > from /usr/include/boost/range/result_iterator.hpp:18, > from /usr/include/boost/range/metafunctions.hpp:20, > from /usr/include/boost/range.hpp:19, > from /usr/include/boost/accumulators/statistics/covariance.hpp:18, > from /usr/include/boost/accumulators/statistics.hpp:13, > from /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include/decomposition/decomposition_plan.hpp:24, > from /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/decomposition/decomposition_plan.cpp:11: >/usr/include/boost/range/result_iterator.hpp:20:1: note: â#pragma message: This header is deprecated. Use <boost/range/iterator.hpp> instead.â > 20 | BOOST_HEADER_DEPRECATED("<boost/range/iterator.hpp>") > | ^~~~~~~~~~~~~~~~~~~~~~~ >/usr/include/boost/range/const_reverse_iterator.hpp:20:1: note: â#pragma message: This header is deprecated. Use <boost/range/reverse_iterator.hpp> instead.â > 20 | BOOST_HEADER_DEPRECATED("<boost/range/reverse_iterator.hpp>") > | ^~~~~~~~~~~~~~~~~~~~~~~ >/usr/include/boost/range/reverse_result_iterator.hpp:20:1: note: â#pragma message: This header is deprecated. Use <boost/range/reverse_iterator.hpp> instead.â > 20 | BOOST_HEADER_DEPRECATED("<boost/range/reverse_iterator.hpp>") > | ^~~~~~~~~~~~~~~~~~~~~~~ >[22/61] /usr/bin/mpicxx -Dsass_sample_EXPORTS -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -fPIC -Wall -MD -MT CMakeFiles/sass_sample.dir/src/sample/atoms.cpp.o -MF CMakeFiles/sass_sample.dir/src/sample/atoms.cpp.o.d -o CMakeFiles/sass_sample.dir/src/sample/atoms.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/sample/atoms.cpp >[23/61] /usr/bin/mpicxx -Dsass_sample_EXPORTS -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -fPIC -Wall -MD -MT CMakeFiles/sass_sample.dir/src/sample/frames.cpp.o -MF CMakeFiles/sass_sample.dir/src/sample/frames.cpp.o.d -o CMakeFiles/sass_sample.dir/src/sample/frames.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/sample/frames.cpp >[24/61] /usr/bin/mpicxx -Dsass_sample_EXPORTS -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -fPIC -Wall -MD -MT CMakeFiles/sass_sample.dir/src/sample/sample.cpp.o -MF CMakeFiles/sass_sample.dir/src/sample/sample.cpp.o.d -o CMakeFiles/sass_sample.dir/src/sample/sample.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/sample/sample.cpp >In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, > from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, > from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, > from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, > from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, > from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, > from /usr/include/boost/shared_ptr.hpp:17, > from /usr/include/boost/date_time/time_clock.hpp:17, > from /usr/include/boost/thread/thread_time.hpp:9, > from /usr/include/boost/thread/lock_types.hpp:18, > from /usr/include/boost/thread/pthread/thread_data.hpp:12, > from /usr/include/boost/thread/thread_only.hpp:17, > from /usr/include/boost/thread/thread.hpp:12, > from /usr/include/boost/thread.hpp:13, > from /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include/sample/coordinate_sets.hpp:20, > from /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include/sample/sample.hpp:26, > from /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/sample/sample.cpp:10: >/usr/include/boost/range/result_iterator.hpp:20:1: note: â#pragma message: This header is deprecated. Use <boost/range/iterator.hpp> instead.â > 20 | BOOST_HEADER_DEPRECATED("<boost/range/iterator.hpp>") > | ^~~~~~~~~~~~~~~~~~~~~~~ >/usr/include/boost/range/const_reverse_iterator.hpp:20:1: note: â#pragma message: This header is deprecated. Use <boost/range/reverse_iterator.hpp> instead.â > 20 | BOOST_HEADER_DEPRECATED("<boost/range/reverse_iterator.hpp>") > | ^~~~~~~~~~~~~~~~~~~~~~~ >/usr/include/boost/range/reverse_result_iterator.hpp:20:1: note: â#pragma message: This header is deprecated. Use <boost/range/reverse_iterator.hpp> instead.â > 20 | BOOST_HEADER_DEPRECATED("<boost/range/reverse_iterator.hpp>") > | ^~~~~~~~~~~~~~~~~~~~~~~ >[25/61] /usr/bin/mpicxx -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -Wall -MD -MT CMakeFiles/s_maketnx.dir/src/main/s_maketnx.cpp.o -MF CMakeFiles/s_maketnx.dir/src/main/s_maketnx.cpp.o.d -o CMakeFiles/s_maketnx.dir/src/main/s_maketnx.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/main/s_maketnx.cpp >[31mFAILED: [0mCMakeFiles/s_maketnx.dir/src/main/s_maketnx.cpp.o >/usr/bin/mpicxx -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -Wall -MD -MT CMakeFiles/s_maketnx.dir/src/main/s_maketnx.cpp.o -MF CMakeFiles/s_maketnx.dir/src/main/s_maketnx.cpp.o.d -o CMakeFiles/s_maketnx.dir/src/main/s_maketnx.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/main/s_maketnx.cpp >In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, > from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, > from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, > from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, > from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, > from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, > from /usr/include/boost/shared_ptr.hpp:17, > from /usr/include/boost/date_time/time_clock.hpp:17, > from /usr/include/boost/date_time/posix_time/posix_time_types.hpp:10, > from /usr/include/boost/asio/time_traits.hpp:23, > from /usr/include/boost/asio/detail/timer_queue_ptime.hpp:22, > from /usr/include/boost/asio/detail/deadline_timer_service.hpp:29, > from /usr/include/boost/asio/basic_deadline_timer.hpp:25, > from /usr/include/boost/asio.hpp:25, > from /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/main/s_maketnx.cpp:22: >/usr/include/boost/range/result_iterator.hpp:20:1: note: â#pragma message: This header is deprecated. Use <boost/range/iterator.hpp> instead.â > 20 | BOOST_HEADER_DEPRECATED("<boost/range/iterator.hpp>") > | ^~~~~~~~~~~~~~~~~~~~~~~ >/usr/include/boost/range/const_reverse_iterator.hpp:20:1: note: â#pragma message: This header is deprecated. Use <boost/range/reverse_iterator.hpp> instead.â > 20 | BOOST_HEADER_DEPRECATED("<boost/range/reverse_iterator.hpp>") > | ^~~~~~~~~~~~~~~~~~~~~~~ >/usr/include/boost/range/reverse_result_iterator.hpp:20:1: note: â#pragma message: This header is deprecated. Use <boost/range/reverse_iterator.hpp> instead.â > 20 | BOOST_HEADER_DEPRECATED("<boost/range/reverse_iterator.hpp>") > | ^~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/main/s_maketnx.cpp: In function âint main(int, char**)â: >/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/main/s_maketnx.cpp:193:3: error: reference to âifstreamâ is ambiguous > 193 | ifstream selection_file(vm["selection"].as<string>().c_str()); > | ^~~~~~~~ >In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/include/g++-v10/ios:38, > from /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/include/g++-v10/istream:38, > from /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/include/g++-v10/sstream:38, > from /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/include/g++-v10/complex:45, > from /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include/common.hpp:18, > from /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/main/s_maketnx.cpp:10: >/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/include/g++-v10/iosfwd:162:34: note: candidates are: âtypedef class std::basic_ifstream<char> std::ifstreamâ > 162 | typedef basic_ifstream<char> ifstream; > | ^~~~~~~~ >In file included from /usr/include/boost/filesystem/string_file.hpp:14, > from /usr/include/boost/filesystem.hpp:22, > from /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/main/s_maketnx.cpp:30: >/usr/include/boost/filesystem/fstream.hpp:175:32: note: âtypedef class boost::filesystem::basic_ifstream<char> boost::filesystem::ifstreamâ > 175 | typedef basic_ifstream<char> ifstream; > | ^~~~~~~~ >/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/main/s_maketnx.cpp:196:23: error: âselection_fileâ was not declared in this scope > 196 | while (std::getline(selection_file,line)) { > | ^~~~~~~~~~~~~~ >[26/61] /usr/bin/mpicxx -Dsass_sample_EXPORTS -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -fPIC -Wall -MD -MT CMakeFiles/sass_sample.dir/src/sample/coordinate_sets.cpp.o -MF CMakeFiles/sass_sample.dir/src/sample/coordinate_sets.cpp.o.d -o CMakeFiles/sass_sample.dir/src/sample/coordinate_sets.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/sample/coordinate_sets.cpp >In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, > from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, > from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, > from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, > from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, > from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, > from /usr/include/boost/shared_ptr.hpp:17, > from /usr/include/boost/date_time/time_clock.hpp:17, > from /usr/include/boost/thread/thread_time.hpp:9, > from /usr/include/boost/thread/lock_types.hpp:18, > from /usr/include/boost/thread/pthread/thread_data.hpp:12, > from /usr/include/boost/thread/thread_only.hpp:17, > from /usr/include/boost/thread/thread.hpp:12, > from /usr/include/boost/thread.hpp:13, > from /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include/sample/coordinate_sets.hpp:20, > from /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/sample/coordinate_sets.cpp:10: >/usr/include/boost/range/result_iterator.hpp:20:1: note: â#pragma message: This header is deprecated. Use <boost/range/iterator.hpp> instead.â > 20 | BOOST_HEADER_DEPRECATED("<boost/range/iterator.hpp>") > | ^~~~~~~~~~~~~~~~~~~~~~~ >/usr/include/boost/range/const_reverse_iterator.hpp:20:1: note: â#pragma message: This header is deprecated. Use <boost/range/reverse_iterator.hpp> instead.â > 20 | BOOST_HEADER_DEPRECATED("<boost/range/reverse_iterator.hpp>") > | ^~~~~~~~~~~~~~~~~~~~~~~ >/usr/include/boost/range/reverse_result_iterator.hpp:20:1: note: â#pragma message: This header is deprecated. Use <boost/range/reverse_iterator.hpp> instead.â > 20 | BOOST_HEADER_DEPRECATED("<boost/range/reverse_iterator.hpp>") > | ^~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/sample/coordinate_sets.cpp: In destructor âCoordinateSets::~CoordinateSets()â: >/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/sample/coordinate_sets.cpp:41:3: warning: deleting object of abstract class type âMotionWalkerâ which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor] > 41 | delete m_motion_walkers[i].p_mw; > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >[27/61] /usr/bin/mpicxx -Dsass_stager_EXPORTS -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -fPIC -Wall -MD -MT CMakeFiles/sass_stager.dir/src/stager/data_stager.cpp.o -MF CMakeFiles/sass_stager.dir/src/stager/data_stager.cpp.o.d -o CMakeFiles/sass_stager.dir/src/stager/data_stager.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/stager/data_stager.cpp >In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, > from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, > from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, > from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, > from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, > from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, > from /usr/include/boost/shared_ptr.hpp:17, > from /usr/include/boost/date_time/time_clock.hpp:17, > from /usr/include/boost/date_time/posix_time/posix_time_types.hpp:10, > from /usr/include/boost/asio/time_traits.hpp:23, > from /usr/include/boost/asio/detail/timer_queue_ptime.hpp:22, > from /usr/include/boost/asio/detail/deadline_timer_service.hpp:29, > from /usr/include/boost/asio/basic_deadline_timer.hpp:25, > from /usr/include/boost/asio.hpp:25, > from /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include/stager/data_stager.hpp:24, > from /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/stager/data_stager.cpp:10: >/usr/include/boost/range/result_iterator.hpp:20:1: note: â#pragma message: This header is deprecated. Use <boost/range/iterator.hpp> instead.â > 20 | BOOST_HEADER_DEPRECATED("<boost/range/iterator.hpp>") > | ^~~~~~~~~~~~~~~~~~~~~~~ >/usr/include/boost/range/const_reverse_iterator.hpp:20:1: note: â#pragma message: This header is deprecated. Use <boost/range/reverse_iterator.hpp> instead.â > 20 | BOOST_HEADER_DEPRECATED("<boost/range/reverse_iterator.hpp>") > | ^~~~~~~~~~~~~~~~~~~~~~~ >/usr/include/boost/range/reverse_result_iterator.hpp:20:1: note: â#pragma message: This header is deprecated. Use <boost/range/reverse_iterator.hpp> instead.â > 20 | BOOST_HEADER_DEPRECATED("<boost/range/reverse_iterator.hpp>") > | ^~~~~~~~~~~~~~~~~~~~~~~ >[28/61] /usr/bin/mpicxx -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -Wall -MD -MT CMakeFiles/s_stage.dir/src/main/s_stage.cpp.o -MF CMakeFiles/s_stage.dir/src/main/s_stage.cpp.o.d -o CMakeFiles/s_stage.dir/src/main/s_stage.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/main/s_stage.cpp >In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, > from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, > from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, > from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, > from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, > from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, > from /usr/include/boost/shared_ptr.hpp:17, > from /usr/include/boost/date_time/time_clock.hpp:17, > from /usr/include/boost/date_time/posix_time/posix_time_types.hpp:10, > from /usr/include/boost/asio/time_traits.hpp:23, > from /usr/include/boost/asio/detail/timer_queue_ptime.hpp:22, > from /usr/include/boost/asio/detail/deadline_timer_service.hpp:29, > from /usr/include/boost/asio/basic_deadline_timer.hpp:25, > from /usr/include/boost/asio.hpp:25, > from /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/main/s_stage.cpp:22: >/usr/include/boost/range/result_iterator.hpp:20:1: note: â#pragma message: This header is deprecated. Use <boost/range/iterator.hpp> instead.â > 20 | BOOST_HEADER_DEPRECATED("<boost/range/iterator.hpp>") > | ^~~~~~~~~~~~~~~~~~~~~~~ >/usr/include/boost/range/const_reverse_iterator.hpp:20:1: note: â#pragma message: This header is deprecated. Use <boost/range/reverse_iterator.hpp> instead.â > 20 | BOOST_HEADER_DEPRECATED("<boost/range/reverse_iterator.hpp>") > | ^~~~~~~~~~~~~~~~~~~~~~~ >/usr/include/boost/range/reverse_result_iterator.hpp:20:1: note: â#pragma message: This header is deprecated. Use <boost/range/reverse_iterator.hpp> instead.â > 20 | BOOST_HEADER_DEPRECATED("<boost/range/reverse_iterator.hpp>") > | ^~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/main/s_stage.cpp: In function âint main(int, char**)â: >/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/main/s_stage.cpp:215:12: warning: unused variable âNFâ [-Wunused-variable] > 215 | size_t NF = sample.coordinate_sets.size(); > | ^~ >/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/src/main/s_stage.cpp:217:12: warning: unused variable âNAâ [-Wunused-variable] > 217 | size_t NA = sample.atoms.selections[target]->size(); > | ^~ >[29/61] /usr/bin/mpicxx -I. -I/usr/include/libxml2 -I/usr/include/geometry -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/vendor/xdrfile-1.1.1/include -I/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/include -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -Wall -MD -MT CMakeFiles/unit_broadcast.dir/tests/unit_broadcast.cpp.o -MF CMakeFiles/unit_broadcast.dir/tests/unit_broadcast.cpp.o.d -o CMakeFiles/unit_broadcast.dir/tests/unit_broadcast.cpp.o -c /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/tests/unit_broadcast.cpp >In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, > from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, > from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, > from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, > from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, > from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, > from /usr/include/boost/shared_ptr.hpp:17, > from /usr/include/boost/date_time/time_clock.hpp:17, > from /usr/include/boost/date_time/posix_time/posix_time_types.hpp:10, > from /usr/include/boost/asio/time_traits.hpp:23, > from /usr/include/boost/asio/detail/timer_queue_ptime.hpp:22, > from /usr/include/boost/asio/detail/deadline_timer_service.hpp:29, > from /usr/include/boost/asio/basic_deadline_timer.hpp:25, > from /usr/include/boost/asio.hpp:25, > from /var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2/tests/unit_broadcast.cpp:22: >/usr/include/boost/range/result_iterator.hpp:20:1: note: â#pragma message: This header is deprecated. Use <boost/range/iterator.hpp> instead.â > 20 | BOOST_HEADER_DEPRECATED("<boost/range/iterator.hpp>") > | ^~~~~~~~~~~~~~~~~~~~~~~ >/usr/include/boost/range/const_reverse_iterator.hpp:20:1: note: â#pragma message: This header is deprecated. Use <boost/range/reverse_iterator.hpp> instead.â > 20 | BOOST_HEADER_DEPRECATED("<boost/range/reverse_iterator.hpp>") > | ^~~~~~~~~~~~~~~~~~~~~~~ >/usr/include/boost/range/reverse_result_iterator.hpp:20:1: note: â#pragma message: This header is deprecated. Use <boost/range/reverse_iterator.hpp> instead.â > 20 | BOOST_HEADER_DEPRECATED("<boost/range/reverse_iterator.hpp>") > | ^~~~~~~~~~~~~~~~~~~~~~~ >ninja: build stopped: subcommand failed. > * ERROR: sci-physics/sassena-1.4.2::gentoo failed (compile phase): > * ninja -v -j16 -l0 failed > * > * Call stack: > * ebuild.sh, line 125: Called src_compile > * environment, line 2133: Called cmake-utils_src_compile > * environment, line 767: Called cmake-utils_src_make > * environment, line 951: Called _cmake_ninja_src_make > * environment, line 499: Called eninja > * environment, line 1256: Called die > * The specific snippet of code: > * "$@" || die "${nonfatal_args[@]}" "${*} failed" > * > * If you need support, post the output of `emerge --info '=sci-physics/sassena-1.4.2::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-physics/sassena-1.4.2::gentoo'`. > * The complete build log is located at '/var/log/emerge-log/build/sci-physics/sassena-1.4.2:20200911-091258.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-physics/sassena-1.4.2/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-physics/sassena-1.4.2/temp/environment'. > * Working directory: '/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2_build' > * S: '/var/tmp/portage/sci-physics/sassena-1.4.2/work/sassena-1.4.2'
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