* Package: sci-misc/nco-4.5.1-r2 * Repository: gentoo * Maintainer: sci@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux openmp test userland_GNU * FEATURES: network-sandbox preserve-libs sandbox test userpriv usersandbox @@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; This ebuild was merged at the following commit: https://github.com/gentoo-mirror/gentoo/commit/332174b3af4b0753c5d34c91fa80e8cdaab35269 (Fri Sep 11 04:35:40 UTC 2020) @@@@@ END @@@@@ emerge --info: Portage 3.0.6 (python 3.8.5-final-0, default/linux/amd64/17.1, gcc-10.2.0, glibc-2.32-r1, 5.4.0-1021-aws x86_64) ================================================================= System uname: Linux-5.4.0-1021-aws-x86_64-Intel-R-_Xeon-R-_Platinum_8175M_CPU_@_2.50GHz-with-glibc2.2.5 KiB Mem: 64359960 total, 30602056 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Fri, 11 Sep 2020 04:35:39 +0000 sh bash 5.0_p18 ld GNU ld (Gentoo 2.34 p6) 2.34.0 app-shells/bash: 5.0_p18::gentoo dev-lang/perl: 5.30.3-r1::gentoo dev-lang/python: 2.7.18-r2::gentoo, 3.6.12::gentoo, 3.7.9::gentoo, 3.8.5::gentoo, 3.9.0_rc1::gentoo dev-util/cmake: 3.18.2::gentoo sys-apps/baselayout: 2.7::gentoo sys-apps/openrc: 0.42.1::gentoo sys-apps/sandbox: 2.20::gentoo sys-devel/autoconf: 2.13-r1::gentoo, 2.69-r5::gentoo sys-devel/automake: 1.16.2::gentoo sys-devel/binutils: 2.34-r2::gentoo sys-devel/gcc: 10.2.0-r1::gentoo sys-devel/gcc-config: 2.3.2::gentoo sys-devel/libtool: 2.4.6-r6::gentoo sys-devel/make: 4.3::gentoo sys-kernel/linux-headers: 5.8::gentoo (virtual/os-headers) sys-libs/glibc: 2.32-r1::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-metamanifest: yes sync-rsync-extra-opts: sync-rsync-verify-jobs: 1 sync-rsync-verify-max-age: 24 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* GPL-3" CBUILD="x86_64-pc-linux-gnu" CC="x86_64-pc-linux-gnu-clang" CFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXX="x86_64-pc-linux-gnu-clang++" CXXFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color" DISTDIR="/var/tmp/portage/sci-misc/nco-4.5.1-r2/distdir" EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -b -k" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg collision-protect config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="C.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld" MAKEOPTS="-j16 V=1" PKGDIR="/root/.packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="acl amd64 berkdb bzip2 cli crypt dri elogind fortran gdbm iconv ipv6 jumbo-build libglvnd libtirpc multilib native-symlinks ncurses nls nptl openmp pam pcre readline seccomp split-usr ssl tcpd test unicode xattr zlib" ABI_X86="64" ELIBC="glibc" KERNEL="linux" USERLAND="GNU" Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS >>> Unpacking source... >>> Unpacking nco-4.5.1.tar.gz to /var/tmp/portage/sci-misc/nco-4.5.1-r2/work >>> Source unpacked in /var/tmp/portage/sci-misc/nco-4.5.1-r2/work >>> Preparing source in /var/tmp/portage/sci-misc/nco-4.5.1-r2/work/nco-4.5.1 ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-misc/nco-4.5.1-r2/work/nco-4.5.1 ... * econf: updating nco-4.5.1/autobld/config.sub with /usr/share/gnuconfig/config.sub * econf: updating nco-4.5.1/autobld/config.guess with /usr/share/gnuconfig/config.guess ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/nco-4.5.1-r2 --htmldir=/usr/share/doc/nco-4.5.1-r2/html --libdir=/usr/lib64 --disable-udunits --disable-dap --disable-gsl --disable-netcdf4 --disable-ncap2 --enable-openmp --disable-static --disable-udunits2 checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for a BSD-compatible install... /usr/lib/portage/python3.8/ebuild-helpers/xattr/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-clang checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether x86_64-pc-linux-gnu-clang accepts -g... yes checking for x86_64-pc-linux-gnu-clang option to accept ISO C89... none needed checking whether x86_64-pc-linux-gnu-clang understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of x86_64-pc-linux-gnu-clang... none checking whether we are using the GNU C++ compiler... yes checking whether x86_64-pc-linux-gnu-clang++ accepts -g... yes checking dependency style of x86_64-pc-linux-gnu-clang++... none checking how to run the C preprocessor... x86_64-pc-linux-gnu-clang -E checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-clang++ -E checking for x86_64-pc-linux-gnu-clang option to accept ISO C99... none needed checking for x86_64-pc-linux-gnu-clang option to accept ISO Standard C... (cached) none needed checking for flex... flex checking lex output file root... lex.yy checking lex library... -lfl checking whether yytext is a pointer... yes checking for bison... bison -y checking whether ln -s works... yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by x86_64-pc-linux-gnu-clang... ld.lld checking if the linker (ld.lld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... llvm-nm checking the name lister (llvm-nm) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for ld.lld option to reload object files... -r checking for x86_64-pc-linux-gnu-objdump... llvm-objdump checking how to recognize dependent libraries... pass_all checking for x86_64-pc-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-pc-linux-gnu-ar... llvm-ar checking for archiver @FILE support... @ checking for x86_64-pc-linux-gnu-strip... llvm-strip checking for x86_64-pc-linux-gnu-ranlib... llvm-ranlib checking command to parse llvm-nm output from x86_64-pc-linux-gnu-clang object... ok checking for sysroot... no checking for x86_64-pc-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if x86_64-pc-linux-gnu-clang supports -fno-rtti -fno-exceptions... yes checking for x86_64-pc-linux-gnu-clang option to produce PIC... -fPIC -DPIC checking if x86_64-pc-linux-gnu-clang PIC flag -fPIC -DPIC works... yes checking if x86_64-pc-linux-gnu-clang static flag -static works... yes checking if x86_64-pc-linux-gnu-clang supports -c -o file.o... yes checking if x86_64-pc-linux-gnu-clang supports -c -o file.o... (cached) yes checking whether the x86_64-pc-linux-gnu-clang linker (ld.lld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-clang++ -E checking for ld used by x86_64-pc-linux-gnu-clang++... ld.lld -m elf_x86_64 checking if the linker (ld.lld -m elf_x86_64) is GNU ld... yes checking whether the x86_64-pc-linux-gnu-clang++ linker (ld.lld -m elf_x86_64) supports shared libraries... yes checking for x86_64-pc-linux-gnu-clang++ option to produce PIC... -fPIC -DPIC checking if x86_64-pc-linux-gnu-clang++ PIC flag -fPIC -DPIC works... yes checking if x86_64-pc-linux-gnu-clang++ static flag -static works... yes checking if x86_64-pc-linux-gnu-clang++ supports -c -o file.o... yes checking if x86_64-pc-linux-gnu-clang++ supports -c -o file.o... (cached) yes checking whether the x86_64-pc-linux-gnu-clang++ linker (ld.lld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for working memcmp... yes checking whether lstat correctly handles trailing slash... yes checking whether stat accepts an empty string... no checking for working strtod... yes checking for canonicalize_file_name... yes checking for floor... no checking for gethostname... yes checking for getpagesize... yes checking for getrusage... yes checking for memchr... yes checking for memmove... yes checking for memset... yes checking for mkstemp... yes checking for pow... no checking for readlink... yes checking for realpath... yes checking for regcomp... yes checking for setlocale... yes checking for sqrt... no checking for strchr... yes checking for strerror... yes checking for strpbrk... yes checking for strrchr... yes checking for strstr... yes checking for strtol... yes checking for ANSI C header files... (cached) yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking libintl.h usability... yes checking libintl.h presence... yes checking for libintl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking cstdlib usability... yes checking cstdlib presence... yes checking for cstdlib... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for uid_t in sys/types.h... yes checking for ptrdiff_t... yes checking size of int*... 8 checking whether C++ compiler implements namespaces... yes checking whether C++ compiler has working valarray... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no ################################# # Test for netCDF # ################################ checking for /opt/local/include/netcdf.h... no checking for /opt/local/lib/libnetcdf.a... no checking netcdf.h usability... yes checking netcdf.h presence... yes checking for netcdf.h... yes checking for nc_open in -lnetcdf... yes ################################# # Test for netCDF4 support # ################################# checking whether NC_CHUNKED is declared... yes configure: netcdf.h contains netCDF4 definitions checking for nc_def_var_chunking in -lnetcdf... yes configure: Good news: Simple program compiles and links to netCDF4 library checking for x86_64-pc-linux-gnu-clang option to support OpenMP... -fopenmp configure: OpenMP support enabled Beginning generic tests for DAP support checking for getopt_long... yes checking for _g95_ac_array in -lf95... no checking for sin in -lm... yes checking for sinf in -lsunmath... no checking for gettext in -lintl... no checking for res_init in -lresolv... no checking for main in -lsocket... no checking for main in -lthread... no checking for nco_open in -lnco... no checking for nc_inq_format... yes checking for getopt... yes checking for getopt_long... (cached) yes checking for atan2... yes checking for acosf... yes checking for asinf... yes checking for atanf... yes checking for atan2f... yes checking for cosf... yes checking for expf... yes checking for fabsf... yes checking for fmodf... yes checking for log10f... yes checking for logf... yes checking for powf... yes checking for sinf... yes checking for sqrtf... yes checking for tanf... yes checking for erff... yes checking for erfcf... yes checking for gammaf... yes checking for acoshf... yes checking for asinhf... yes checking for atanhf... yes checking for coshf... yes checking for sinhf... yes checking for tanhf... yes checking for ceilf... yes checking for floorf... yes checking for nearbyint... yes checking for rint... yes checking for round... yes checking for trunc... yes checking for nearbyintf... yes checking for rintf... yes checking for roundf... yes checking for truncf... yes checking for getopt_long... (cached) yes checking for strdup... yes checking for strcasecmp... yes checking for strcasestr... yes ########################################################## # Sorting out MacOSX build parameters # ########################################################## ################################# # Testing for ANTLR support # ################################# checking for runantlr... no checking for antlr... no configure: antlr library was not found, disabling ncap2 build INFO: ANTLR support not found. To build ncap2, please install ANTLR and its C++ development package, e.g., 'sudo aptitude install antlr libantlr-dev' or 'sudo yum install antlr antlr-c++-devel' ######################################## # Testing for ESMF support # ######################################## checking for main in -lnetcdf_c++... no checking for main in -lnetcdff... no checking for main in -ldl... yes checking for main in -lgfortran... yes checking for main in -lrt... yes checking for ESMC_Initialize in -lesmf... no configure: These ESMF library and header tests must succeed for ESMF support: checking for /usr/local/include/ESMC.h... no configure: WARNING: ESMF support disabled (missing/unusable library or header file) ######################################## # Testing for GSL support # ######################################## checking regex.h usability... yes checking regex.h presence... yes checking for regex.h... yes checking for sys/types.h... (cached) yes checking for regexec... yes checking for regcomp... (cached) yes checking for regfree... yes ######################################## # Testing for UDUNITS support # ######################################## checking for ncgen... /usr/bin/ncgen configure: Creating sample netCDF data files for self-tests ############################### # Require Shared Libs? # ############################### checking for makeinfo... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating data/Makefile config.status: creating src/Makefile config.status: creating src/nco/Makefile config.status: creating man/Makefile config.status: creating src/nco_c++/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Configuration Parameters: AR_FLAGS............. cru CC................... x86_64-pc-linux-gnu-clang CFLAGS............... -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE CPP.................. x86_64-pc-linux-gnu-clang -E CPPFLAGS............. -I/usr/include CXX.................. x86_64-pc-linux-gnu-clang++ CXXFLAGS............. -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color ENABLE_DAP........... no ENABLE_ESMF...........no ENABLE_GSL........... no ENABLE_NETCDF4....... yes ENABLE_OPENMP........ yes ENABLE_UDUNITS....... no ENABLE_UDUNITS2...... no GSL_ROOT............. HAVE_ANTLR........... no HAVE_MAKEINFO........ yes HAVE_NETCDF4_H....... yes HOST................. HOSTNAME............. localhost LDFLAGS.............. -L/usr/lib64 -lnetcdf -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld LIBS................. -lm -lnetcdf -lnetcdf NETCDF_ROOT.......... /usr OPENMP_CFLAGS........ -fopenmp host................. x86_64-pc-linux-gnu install prefix ...... /usr ******************************************************************* Configuration complete. You are now ready to run 'make'. Ensure 'make' points to GNU Make (AT&T Make chokes on GNU syntax). If the build fails, please examine the file 'configure.eg' in the top-level NCO directory. It contains examples known to build NCO for various platforms and compilers. ******************************************************************* >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-misc/nco-4.5.1-r2/work/nco-4.5.1 ... make -j16 V=1 make all-recursive make[1]: Entering directory '/var/tmp/portage/sci-misc/nco-4.5.1-r2/work/nco-4.5.1' Making all in data make[2]: Entering directory '/var/tmp/portage/sci-misc/nco-4.5.1-r2/work/nco-4.5.1/data' /usr/bin/ncgen -o big.nc big.cdl /usr/bin/ncgen -o in_rec_zero.nc in_rec_zero.cdl ncks -O -7 --cnk_dmn time,10 in.nc in_4c.nc make[2]: ncks: No such file or directory make[2]: [Makefile:487: in_4c.nc] Error 127 (ignored) /usr/bin/ncgen -k netCDF-4 -o hdn.nc hdn.cdl /usr/bin/ncgen -k netCDF-4 -o mrd.nc mrd.cdl make[2]: Leaving directory '/var/tmp/portage/sci-misc/nco-4.5.1-r2/work/nco-4.5.1/data' Making all in src make[2]: Entering directory '/var/tmp/portage/sci-misc/nco-4.5.1-r2/work/nco-4.5.1/src' Making all in nco make[3]: Entering directory '/var/tmp/portage/sci-misc/nco-4.5.1-r2/work/nco-4.5.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_att_utl.lo nco_att_utl.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_aux.lo nco_aux.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_bnr.lo nco_bnr.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cln_utl.lo nco_cln_utl.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnf_dmn.lo nco_cnf_dmn.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnf_typ.lo nco_cnf_typ.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnk.lo nco_cnk.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnv_arm.lo nco_cnv_arm.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnv_csm.lo nco_cnv_csm.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_ctl.lo nco_ctl.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_dbg.lo nco_dbg.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_dmn_utl.lo nco_dmn_utl.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_fl_utl.lo nco_fl_utl.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_grp_utl.lo nco_grp_utl.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_grp_trv.lo nco_grp_trv.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_lmt.lo nco_lmt.c libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_att_utl.c -fPIC -DPIC -o .libs/nco_att_utl.o libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_bnr.c -fPIC -DPIC -o .libs/nco_bnr.o libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cln_utl.c -fPIC -DPIC -o .libs/nco_cln_utl.o libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnf_dmn.c -fPIC -DPIC -o .libs/nco_cnf_dmn.o libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnk.c -fPIC -DPIC -o .libs/nco_cnk.o libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnv_csm.c -fPIC -DPIC -o .libs/nco_cnv_csm.o libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_aux.c -fPIC -DPIC -o .libs/nco_aux.o libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnf_typ.c -fPIC -DPIC -o .libs/nco_cnf_typ.o libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_grp_trv.c -fPIC -DPIC -o .libs/nco_grp_trv.o libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ctl.c -fPIC -DPIC -o .libs/nco_ctl.o libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_dmn_utl.c -fPIC -DPIC -o .libs/nco_dmn_utl.o libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_grp_utl.c -fPIC -DPIC -o .libs/nco_grp_utl.o libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnv_arm.c -fPIC -DPIC -o .libs/nco_cnv_arm.o libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_fl_utl.c -fPIC -DPIC -o .libs/nco_fl_utl.o libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_dbg.c -fPIC -DPIC -o .libs/nco_dbg.o libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_lmt.c -fPIC -DPIC -o .libs/nco_lmt.o In file included from nco_bnr.c:10: In file included from ./nco_bnr.h:17: In file included from /usr/include/stdio.h:27: In file included from /usr/include/bits/libc-header-start.h:33: /usr/include/features.h:187:3: warning: "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-W#warnings] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ In file included from In file included from nco_grp_trv.cnco_att_utl.c::14: 10In file included from : ./nco_grp_trv.h:21In file included from : ./nco_att_utl.h:In file included from /usr/include/string.h:2126: In file included from : /usr/include/stdio.hIn file included from /usr/include/bits/libc-header-start.h::27: 33In file included from : /usr/include/features.h/usr/include/bits/libc-header-start.h::18733:: In file included from 3/usr/include/features.h:nco_cln_utl.c: :187warning:: 103: :"_BSD_SOURCE andwarningIn file included from : ./nco_cln_utl.h :"_BSD_SOURCE_SVID_SOURCE 21areand: In file included from In file included from _SVID_SOURCE/usr/include/ctype.h :deprecated,arenco_cnf_dmn.c 25use : : deprecated,_DEFAULT_SOURCE"/usr/include/features.h10 :use: 187In file included from [-W#warnings] ./nco_cnf_dmn.h ::_DEFAULT_SOURCE"173 :: [-W#warnings] In file included from /usr/include/stdio.hwarning: :27# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE""_BSD_SOURCE : and ^ In file included from _SVID_SOURCE/usr/include/bits/libc-header-start.h # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE": In file included from 33are: nco_cnk.c ^ : /usr/include/features.h 45deprecated,:: 187In file included from ./nco_cnk.huse: 3_DEFAULT_SOURCE": 17:[-W#warnings]: In file included from warning/usr/include/math.h: :"_BSD_SOURCE 27and: In file included from /usr/include/bits/libc-header-start.h_SVID_SOURCE# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" :are33 : ^ deprecated,/usr/include/features.h :187use :3_DEFAULT_SOURCE" [-W#warnings]: warning: "_BSD_SOURCE and _SVID_SOURCE are deprecated,# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" use ^ _DEFAULT_SOURCE" [-W#warnings] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ In file included from nco_cnf_typ.c:10: In file included from ./nco_cnf_typ.h:17: In file included from /usr/include/math.h:27: In file included from /usr/include/bits/libc-header-start.h:33: /usr/include/features.h:187:3: warning: "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-W#warnings] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ In file included from nco_dmn_utl.c:10: In file included from ./nco_dmn_utl.h:21: In file included from /usr/include/stdio.h:27: In file included from /usr/include/bits/libc-header-start.h:33: /usr/include/features.h:187:3: warning: "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-W#warnings] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ In file included from nco_cnv_arm.c:10: In file included from ./nco_cnv_arm.h:17: In file included from /usr/include/stdio.h:27: In file included from /usr/include/bits/libc-header-start.h:33: /usr/include/features.h:187:3: warning: "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-W#warnings] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ In file included from nco_dbg.c:10: In file included from ./nco_dbg.h:17: In file included from /usr/include/stdio.h:27: In file included from /usr/include/bits/libc-header-start.h:33: /usr/include/features.h:187:3: warning: "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-W#warnings] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ In file included from nco_grp_utl.c:19: In file included from ./nco_grp_utl.hIn file included from :21: In file included from nco_fl_utl.c/usr/include/assert.h::1035: /usr/include/features.h: :In file included from 187:./nco_fl_utl.h3:21:: In file included from /usr/include/errno.hwarning:: "_BSD_SOURCE25 : /usr/include/features.hand: _SVID_SOURCE187: are3: warningdeprecated,: use "_BSD_SOURCE_DEFAULT_SOURCE" and [-W#warnings] _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-W#warnings] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ In file included from nco_aux.c:19: In file included from ./nco_aux.h:17: In file included from /usr/include/math.h:27: In file included from /usr/include/bits/libc-header-start.h:33: /usr/include/features.h:187:3: warning: "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-W#warnings] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ In file included from nco_cnv_csm.c:10: In file included from ./nco_cnv_csm.h:In file included from nco_lmt.c:10: In file included from ./nco_lmt.h:21: In file included from /usr/include/math.h:27: In file included from /usr/include/bits/libc-header-start.h:33: /usr/include/features.h:187:3: warning: "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-W#warnings] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ 17: In file included from /usr/include/stdio.h:27: In file included from /usr/include/bits/libc-header-start.h:33: /usr/include/features.h:187:3: warningIn file included from nco_ctl.c:10: In file included from ./nco_ctl.h:21: In file included from /usr/include/stdio.h:27: In file included from /usr/include/bits/libc-header-start.h:33: /usr/include/features.h:187:3: warning: "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-W#warnings] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ : "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-W#warnings] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ 1 warning generated. /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_lst_utl.lo nco_lst_utl.c libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_lst_utl.c -fPIC -DPIC -o .libs/nco_lst_utl.o nco_fl_utl.c:67:6: warning: implicit declaration of function 'strcasestr' is invalid in C99 [-Wimplicit-function-declaration] if(strcasestr("classic",fl_fmt_sng) && !strcasestr(fl_fmt_sng,"netcdf4")){ ^ nco_cln_utl.c:683:6: warning: implicit declaration of function 'strcasestr' is invalid in C99 [-Wimplicit-function-declaration] if(strcasestr(fl_bs_sng," from ") || strcasestr(fl_bs_sng," since ") |... ^ nco_cln_utl.c:704:6: warning: implicit declaration of function 'strcasestr' is invalid in C99 [-Wimplicit-function-declaration] if(strcasestr(unit_sng," from ") || strcasestr(unit_sng," since ") || ... ^ 1 warning generated. In file included from nco_lst_utl.c:10: In file included from ./nco_lst_utl.h:21: In file included from /usr/include/stdio.h:27: In file included from /usr/include/bits/libc-header-start.h:33: /usr/include/features.h:187:3: warning: "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-W#warnings] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_md5.lo nco_md5.c 1 warning generated. /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_mmr.lo nco_mmr.c libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_md5.c -fPIC -DPIC -o .libs/nco_md5.o libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mmr.c -fPIC -DPIC -o .libs/nco_mmr.o In file included from nco_md5.c:25: In file included from ./nco_md5.h:22: In file included from /usr/include/stdio.h:27: In file included from /usr/include/bits/libc-header-start.h:33: /usr/include/features.h:187:3: warning: "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-W#warnings] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ nco_lst_utl.c:38:47: warning: unknown escape sequence '\.' [-Wunknown-escape-sequence] const char rx_sng[]="%([+-0#'I])?([0-9]*)?([\.?[0-9]*)?([h+l+Ljzt])?[b... ^~ In file included from nco_mmr.c:29: In file included from ./nco_mmr.h:21: In file included from /usr/include/errno.h:25: /usr/include/features.h:187:3: warning: "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-W#warnings] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ 1 warning generated. /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_msa.lo nco_msa.c 3 warnings generated. /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_mss_val.lo nco_mss_val.c 1 warning generated. libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_msa.c -fPIC -DPIC -o .libs/nco_msa.o /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_netcdf.lo nco_netcdf.c libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mss_val.c -fPIC -DPIC -o .libs/nco_mss_val.o 1In file included from nco_msa.c:10: In file included from ./nco_msa.h:21: In file included from /usr/include/stdio.h:27: In file included from /usr/include/bits/libc-header-start.h:33: /usr/include/features.h:187:3: warning: "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-W#warnings] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ warning generated. In file included from nco_mss_val.c:10: In file included from ./nco_mss_val.h:21: In file included from /usr/include/stdio.h:27: In file included from /usr/include/bits/libc-header-start.h:33: /usr/include/features.h:187:3: warning: "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-W#warnings] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_omp.lo nco_omp.c libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_netcdf.c -fPIC -DPIC -o .libs/nco_netcdf.o 1 warning generated. In file included from nco_netcdf.c:10: In file included from ./nco_netcdf.h:43: In file included from /usr/include/ctype.h:25: /usr/include/features.h:187:3: warning: "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-W#warnings] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_pck.lo nco_pck.c libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_omp.c -fPIC -DPIC -o .libs/nco_omp.o In file included from nco_omp.c:10: In file included from ./nco_omp.h:17: In file included from /usr/include/stdio.h:27: In file included from /usr/include/bits/libc-header-start.h:33: /usr/include/features.h:187:3: warning: "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-W#warnings] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_pck.c -fPIC -DPIC -o .libs/nco_pck.o 1 warning generated. 2 warnings generated. /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_ppc.lo nco_ppc.c In file included from nco_pck.c:10: In file included from ./nco_pck.h:17: In file included from /usr/include/stdio.h:27: In file included from /usr/include/bits/libc-header-start.h:33: /usr/include/features.h:187:3: warning: "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-W#warnings] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_prn.lo nco_prn.c 2 warnings generated. /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_rec_var.lo nco_rec_var.c libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ppc.c -fPIC -DPIC -o .libs/nco_ppc.o libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_prn.c -fPIC -DPIC -o .libs/nco_prn.o nco_omp.c:210:53: error: variable 'fp_stderr' must have explicitly specified data sharing attributes if(nco_dbg_lvl_get() >= nco_dbg_std) (void)fprintf(fp_stderr,"%s... ^~~~~~~~~ nco_omp.c:205:31: note: explicit data sharing attribute requested here # pragma omp parallel default(none) shared(thr_nbr_act) ^ 1 warning and 1 error generated. libtool: compile: x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rec_var.c -fPIC -DPIC -o .libs/nco_rec_var.o In file included from nco_ppc.c:13: In file included from ./nco_ppc.h:17: In file included from /usr/include/ctype.h:25: /usr/include/features.h:187:3: warning: "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-W#warnings] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ make[3]: *** [Makefile:1089: nco_omp.lo] Error 1 make[3]: *** Waiting for unfinished jobs.... In file included from nco_prn.c:10: In file included from ./nco_prn.h:21: In file included from /usr/include/stdio.h:27: In file included from /usr/include/bits/libc-header-start.h:33: /usr/include/features.h:187:3: warning: "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-W#warnings] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ In file included from nco_rec_var.c:10: In file included from ./nco_rec_var.h:17: In file included from /usr/include/stdio.h:27: In file included from /usr/include/bits/libc-header-start.h:33: /usr/include/features.h:187:3: warning: "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-W#warnings] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. make[3]: Leaving directory '/var/tmp/portage/sci-misc/nco-4.5.1-r2/work/nco-4.5.1/src/nco' make[2]: *** [Makefile:382: all-recursive] Error 1 make[2]: Leaving directory '/var/tmp/portage/sci-misc/nco-4.5.1-r2/work/nco-4.5.1/src' make[1]: *** [Makefile:444: all-recursive] Error 1 make[1]: Leaving directory '/var/tmp/portage/sci-misc/nco-4.5.1-r2/work/nco-4.5.1' make: *** [Makefile:376: all] Error 2 * ERROR: sci-misc/nco-4.5.1-r2::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-misc/nco-4.5.1-r2::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-misc/nco-4.5.1-r2::gentoo'`. * The complete build log is located at '/var/log/emerge-log/build/sci-misc/nco-4.5.1-r2:20200911-055955.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-misc/nco-4.5.1-r2/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-misc/nco-4.5.1-r2/temp/environment'. * Working directory: '/var/tmp/portage/sci-misc/nco-4.5.1-r2/work/nco-4.5.1' * S: '/var/tmp/portage/sci-misc/nco-4.5.1-r2/work/nco-4.5.1'