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Gentoo's Bugzilla – Attachment 659462 Details for
Bug 741584
sci-misc/ncview-2.1.7 fails to compile: You must use the same compiler for ncview as was used to build the netcdf library
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build.log
build.log (text/plain), 10.58 KB, created by
Agostino Sarubbo
on 2020-09-11 06:53:04 UTC
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Description:
build.log
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Creator:
Agostino Sarubbo
Created:
2020-09-11 06:53:04 UTC
Size:
10.58 KB
patch
obsolete
> * Package: sci-misc/ncview-2.1.7 > * Repository: gentoo > * Maintainer: sci@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox test userpriv usersandbox > > >@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ >This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; >This ebuild was merged at the following commit: >https://github.com/gentoo-mirror/gentoo/commit/c25c68f3bf18b0dfc08f0a21973d6fa674c450e4 (Fri Sep 11 05:35:29 UTC 2020) >@@@@@ END @@@@@ > > > >emerge --info: >Portage 3.0.6 (python 3.8.5-final-0, default/linux/amd64/17.1, gcc-10.2.0, glibc-2.32-r1, 5.4.0-1021-aws x86_64) >================================================================= >System uname: Linux-5.4.0-1021-aws-x86_64-Intel-R-_Xeon-R-_Platinum_8175M_CPU_@_2.50GHz-with-glibc2.2.5 >KiB Mem: 64359960 total, 30637680 free >KiB Swap: 0 total, 0 free >Timestamp of repository gentoo: Fri, 11 Sep 2020 05:35:28 +0000 >sh bash 5.0_p18 >ld GNU ld (Gentoo 2.34 p6) 2.34.0 >app-shells/bash: 5.0_p18::gentoo >dev-lang/perl: 5.30.3-r1::gentoo >dev-lang/python: 2.7.18-r2::gentoo, 3.6.12::gentoo, 3.7.9::gentoo, 3.8.5::gentoo, 3.9.0_rc1::gentoo >dev-util/cmake: 3.18.2::gentoo >sys-apps/baselayout: 2.7::gentoo >sys-apps/openrc: 0.42.1::gentoo >sys-apps/sandbox: 2.20::gentoo >sys-devel/autoconf: 2.13-r1::gentoo, 2.69-r5::gentoo >sys-devel/automake: 1.16.2::gentoo >sys-devel/binutils: 2.34-r2::gentoo >sys-devel/gcc: 10.2.0-r1::gentoo >sys-devel/gcc-config: 2.3.2::gentoo >sys-devel/libtool: 2.4.6-r6::gentoo >sys-devel/make: 4.3::gentoo >sys-kernel/linux-headers: 5.8::gentoo (virtual/os-headers) >sys-libs/glibc: 2.32-r1::gentoo >Repositories: > >gentoo > location: /usr/portage > sync-type: rsync > sync-uri: rsync://rsync.gentoo.org/gentoo-portage > priority: -1000 > sync-rsync-extra-opts: > sync-rsync-verify-metamanifest: yes > sync-rsync-verify-max-age: 24 > sync-rsync-verify-jobs: 1 > >ACCEPT_KEYWORDS="amd64 ~amd64" >ACCEPT_LICENSE="* GPL-2" >CBUILD="x86_64-pc-linux-gnu" >CC="x86_64-pc-linux-gnu-clang" >CFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color" >CHOST="x86_64-pc-linux-gnu" >CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" >CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" >CXX="x86_64-pc-linux-gnu-clang++" >CXXFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color" >DISTDIR="/var/tmp/portage/sci-misc/ncview-2.1.7/distdir" >EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -b -k" >ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" >FCFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color" >FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg collision-protect config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" >FFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color" >GENTOO_MIRRORS="http://distfiles.gentoo.org" >LANG="C.UTF-8" >LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld" >MAKEOPTS="-j16 V=1" >PKGDIR="/root/.packages" >PORTAGE_CONFIGROOT="/" >PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" >PORTAGE_TMPDIR="/var/tmp" >USE="acl amd64 berkdb bzip2 cli crypt dri elogind fortran gdbm iconv ipv6 jumbo-build libglvnd libtirpc multilib native-symlinks ncurses nls nptl openmp pam pcre readline seccomp split-usr ssl tcpd test unicode xattr zlib" ABI_X86="64" ELIBC="glibc" KERNEL="linux" USERLAND="GNU" >Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS > > > >>>> Unpacking source... >>>> Unpacking ncview-2.1.7.tar.gz to /var/tmp/portage/sci-misc/ncview-2.1.7/work >>>> Source unpacked in /var/tmp/portage/sci-misc/ncview-2.1.7/work >>>> Preparing source in /var/tmp/portage/sci-misc/ncview-2.1.7/work/ncview-2.1.7 ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-misc/ncview-2.1.7/work/ncview-2.1.7 ... >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --docdir=/usr/share/doc/ncview-2.1.7 --htmldir=/usr/share/doc/ncview-2.1.7/html --libdir=/usr/lib64 >checking for nc-config... yes >Netcdf library version: netCDF 4.6.1 >Netcdf library has version 4 interface present: yes >Netcdf library was compiled with C compiler: x86_64-pc-linux-gnu-gcc >checking for x86_64-pc-linux-gnu-x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-clang >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-clang accepts -g... yes >checking for x86_64-pc-linux-gnu-clang option to accept ISO C89... none needed >checking for library containing strerror... none required >checking how to run the C preprocessor... x86_64-pc-linux-gnu-clang -E >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for ANSI C header files... yes >checking for a BSD-compatible install... /usr/lib/portage/python3.8/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking for style of include used by make... GNU >checking dependency style of x86_64-pc-linux-gnu-clang... none >checking for X... libraries , headers >checking for gethostbyname... yes >checking for connect... yes >checking for remove... yes >checking for shmat... yes >checking for IceConnectionNumber in -lICE... yes >checking for the Athena widgets... >checking for XtWindow in -lXt... yes >checking for XawScrollbarSetThumb in -lXaw... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking X11/Intrinsic.h usability... yes >checking X11/Intrinsic.h presence... yes >checking for X11/Intrinsic.h... yes >checking X11/Xaw/Simple.h usability... yes >checking X11/Xaw/Simple.h presence... yes >checking for X11/Xaw/Simple.h... yes >X Athena widget (Xaw) libraries: -lXaw -lXt >checking for X11 library... >checking for XPutImage in -lX11... yes >X11 libraries: -lX11 >checking udunits2.h usability... yes >checking udunits2.h presence... yes >checking for udunits2.h... yes >checking for ut_read_xml in -ludunits2... yes >checking for expat library (required by udunits2)... >checking for XML_GetBase in -lexpat... yes >Expat libraries (needed by udunits2): -lexpat -L. -ludunits2 >**************************************************************************** >Udunits library version 2 support enabled. >udunits2 dirs: include: . library: . libname: udunits2 >**************************************************************************** >checking png.h usability... yes >checking png.h presence... yes >checking for png.h... yes >checking for png_write_png in -lpng... yes >====================================================================== >Configuration error: You specified that the "x86_64-pc-linux-gnu-clang" C compiler should be >used to build ncview, but the netcdf library was compiled with the "x86_64-pc-linux-gnu-gcc" >compiler. Here is the path where I found the netcdf library: > -L/usr/lib64 -lnetcdf >You must use the same compiler for ncview as was used to build the netcdf library! > >There are two possible ways to fix this. > >1) Download the netcdf library and compile it with the x86_64-pc-linux-gnu-clang compiler, >install it, and try again to build ncview. NOTE that if you do this, >you might have more than one version of the netcdf library on your system, >built with differnt compilers, which can get confusing. If you do this, >you will have to specify the path to the (new) version of nc-config >that was compiled using the x86_64-pc-linux-gnu-clang compiler by configuring ncview in a >way similar to this: > > ./configure --with-nc-config=/path/to/newly/compiled/nc-config > >2) Configure ncview to use the x86_64-pc-linux-gnu-gcc compiler. >To do this, set environmental variable CC to x86_64-pc-linux-gnu-gcc >and run ./configure again >=================================================================== > >!!! Please attach the following file when seeking support: >!!! /var/tmp/portage/sci-misc/ncview-2.1.7/work/ncview-2.1.7/config.log > * ERROR: sci-misc/ncview-2.1.7::gentoo failed (configure phase): > * econf failed > * > * Call stack: > * ebuild.sh, line 125: Called src_configure > * environment, line 2025: Called default > * phase-functions.sh, line 855: Called default_src_configure > * phase-functions.sh, line 890: Called __eapi2_src_configure > * phase-helpers.sh, line 798: Called econf > * phase-helpers.sh, line 681: Called __helpers_die 'econf failed' > * isolated-functions.sh, line 112: Called die > * The specific snippet of code: > * die "$@" > * > * If you need support, post the output of `emerge --info '=sci-misc/ncview-2.1.7::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-misc/ncview-2.1.7::gentoo'`. > * The complete build log is located at '/var/log/emerge-log/build/sci-misc/ncview-2.1.7:20200911-060205.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-misc/ncview-2.1.7/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-misc/ncview-2.1.7/temp/environment'. > * Working directory: '/var/tmp/portage/sci-misc/ncview-2.1.7/work/ncview-2.1.7' > * S: '/var/tmp/portage/sci-misc/ncview-2.1.7/work/ncview-2.1.7'
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bug 741584
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659464