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Gentoo's Bugzilla – Attachment 659162 Details for
Bug 741198
sci-biology/seaview-4.6 fails to compile
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build.log
build.log (text/plain), 14.38 KB, created by
Agostino Sarubbo
on 2020-09-08 15:00:18 UTC
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Description:
build.log
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Creator:
Agostino Sarubbo
Created:
2020-09-08 15:00:18 UTC
Size:
14.38 KB
patch
obsolete
> * Package: sci-biology/seaview-4.6 > * Repository: gentoo > * Maintainer: sci-biology@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU xft > * FEATURES: network-sandbox preserve-libs sandbox test userpriv usersandbox > > >@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ >This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; >This ebuild was merged at the following commit: >https://github.com/gentoo-mirror/gentoo/commit/497605d2389389abe98816032c4a471ff374e080 (Tue Sep 8 12:35:37 UTC 2020) >@@@@@ END @@@@@ > > > >emerge --info: >Portage 3.0.6 (python 3.8.5-final-0, default/linux/amd64/17.1, gcc-10.2.0, glibc-2.32-r1, 5.4.0-1021-aws x86_64) >================================================================= >System uname: Linux-5.4.0-1021-aws-x86_64-Intel-R-_Xeon-R-_Platinum_8175M_CPU_@_2.50GHz-with-glibc2.2.5 >KiB Mem: 64359960 total, 27358148 free >KiB Swap: 0 total, 0 free >Timestamp of repository gentoo: Tue, 08 Sep 2020 12:35:36 +0000 >sh bash 5.0_p18 >ld GNU ld (Gentoo 2.34 p6) 2.34.0 >app-shells/bash: 5.0_p18::gentoo >dev-lang/perl: 5.30.3-r1::gentoo >dev-lang/python: 2.7.18-r1::gentoo, 3.6.12::gentoo, 3.7.9::gentoo, 3.8.5::gentoo, 3.9.0_rc1::gentoo >dev-util/cmake: 3.18.2::gentoo >sys-apps/baselayout: 2.7::gentoo >sys-apps/openrc: 0.42.1::gentoo >sys-apps/sandbox: 2.20::gentoo >sys-devel/autoconf: 2.13-r1::gentoo, 2.69-r5::gentoo >sys-devel/automake: 1.16.2::gentoo >sys-devel/binutils: 2.34-r2::gentoo >sys-devel/gcc: 10.2.0-r1::gentoo >sys-devel/gcc-config: 2.3.2::gentoo >sys-devel/libtool: 2.4.6-r6::gentoo >sys-devel/make: 4.3::gentoo >sys-kernel/linux-headers: 5.8::gentoo (virtual/os-headers) >sys-libs/glibc: 2.32-r1::gentoo >Repositories: > >gentoo > location: /usr/portage > sync-type: rsync > sync-uri: rsync://rsync.gentoo.org/gentoo-portage > priority: -1000 > sync-rsync-verify-metamanifest: yes > sync-rsync-extra-opts: > sync-rsync-verify-max-age: 24 > sync-rsync-verify-jobs: 1 > >ACCEPT_KEYWORDS="amd64 ~amd64" >ACCEPT_LICENSE="* public-domain" >CBUILD="x86_64-pc-linux-gnu" >CC="x86_64-pc-linux-gnu-clang" >CFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color" >CHOST="x86_64-pc-linux-gnu" >CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" >CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" >CXX="x86_64-pc-linux-gnu-clang++" >CXXFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color" >DISTDIR="/var/tmp/portage/sci-biology/seaview-4.6/distdir" >EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -b -k" >ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" >FCFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color" >FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg collision-protect config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" >FFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color" >GENTOO_MIRRORS="http://distfiles.gentoo.org" >LANG="C.UTF-8" >LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld" >MAKEOPTS="-j16 V=1" >PKGDIR="/root/.packages" >PORTAGE_CONFIGROOT="/" >PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" >PORTAGE_TMPDIR="/var/tmp" >USE="acl amd64 berkdb bzip2 cli crypt dri elogind fortran gdbm iconv ipv6 jumbo-build libglvnd libtirpc multilib native-symlinks ncurses nls nptl openmp pam pcre readline seccomp split-usr ssl tcpd test unicode xattr xft zlib" ABI_X86="64" ELIBC="glibc" KERNEL="linux" USERLAND="GNU" >Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS > > > >>>> Unpacking source... >>>> Unpacking seaview_4.6.tar.gz to /var/tmp/portage/sci-biology/seaview-4.6/work >>>> Source unpacked in /var/tmp/portage/sci-biology/seaview-4.6/work >>>> Preparing source in /var/tmp/portage/sci-biology/seaview-4.6/work/seaview ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-biology/seaview-4.6/work/seaview ... >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-biology/seaview-4.6/work/seaview ... >make -j16 V=1 >x86_64-pc-linux-gnu-clang++ -c -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Dunix -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -I. -I/usr/include/fltk -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF seaview.cxx >x86_64-pc-linux-gnu-clang++ -c -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Dunix -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -I. -I/usr/include/fltk -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF custom.cxx >x86_64-pc-linux-gnu-clang++ -c -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Dunix -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -I. -I/usr/include/fltk -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF use_mase_files.cxx >x86_64-pc-linux-gnu-clang++ -c -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Dunix -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -I. -I/usr/include/fltk -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF regions.cxx >x86_64-pc-linux-gnu-clang++ -c -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Dunix -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -I. -I/usr/include/fltk -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF load_seq.cxx >x86_64-pc-linux-gnu-clang++ -c -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Dunix -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -I. -I/usr/include/fltk -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF align.cxx >x86_64-pc-linux-gnu-clang++ -c -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Dunix -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -I. -I/usr/include/fltk -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF xfmatpt.cxx >x86_64-pc-linux-gnu-clang++ -c -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Dunix -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -I. -I/usr/include/fltk -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF comlines.cxx >x86_64-pc-linux-gnu-clang++ -c -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Dunix -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -I. -I/usr/include/fltk -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF resource.cxx >x86_64-pc-linux-gnu-clang++ -c -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Dunix -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -I. -I/usr/include/fltk -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF nexus.cxx >x86_64-pc-linux-gnu-clang++ -c -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Dunix -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -I. -I/usr/include/fltk -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF viewasprots.cxx >x86_64-pc-linux-gnu-clang++ -c -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Dunix -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -I. -I/usr/include/fltk -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF racnuc_fetch.cxx >x86_64-pc-linux-gnu-clang++ -c -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Dunix -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -I. -I/usr/include/fltk -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF concatenate.cxx >x86_64-pc-linux-gnu-clang++ -c -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Dunix -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -I. -I/usr/include/fltk -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF statistics.cxx >x86_64-pc-linux-gnu-clang++ -c -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Dunix -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -I. -I/usr/include/fltk -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF trees.cxx >x86_64-pc-linux-gnu-clang++ -c -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Dunix -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -I. -I/usr/include/fltk -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF treedraw.cxx >x86_64-pc-linux-gnu-clang++ -c -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Dunix -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -I. -I/usr/include/fltk -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF addbootstrap.cxx >align.cxx:757:3: warning: 'delete' applied to a pointer that was allocated with > 'new[]'; did you mean 'delete[]'? [-Wmismatched-new-delete] > delete options; > ^ > [] >align.cxx:750:19: note: allocated with 'new[]' here > char *options = new char[100 + (name ? strlen(name) : 0) ]; > ^ >xfmatpt.cxx:208:87: error: invalid suffix on literal; C++11 requires a space > between literal and identifier [-Wreserved-user-defined-literal] > ...= cre_button(fin, curr_y, &width, but_height, fontsize, "Write "PDF_OR_PS); > ^ > >treedraw.cxx:213:16: error: invalid suffix on literal; C++11 requires a space > between literal and identifier [-Wreserved-user-defined-literal] > {"Save as "PDF_OR_PS"", 0, file_callback, NULL, 0}, > ^ > >xfmatpt.cxx:873:48: error: invalid suffix on literal; C++11 requires a space > between literal and identifier [-Wreserved-user-defined-literal] > fl_message("Dot plot is now in file\n%s\nin "PDF_OR_PS" format", surfa... > ^ > >2 errors generated. >make: *** [Makefile:57: xfmatpt.o] Error 1 >make: *** Waiting for unfinished jobs.... >seaview.cxx:3317:24: error: invalid suffix on literal; C++11 requires a space > between literal and identifier [-Wreserved-user-defined-literal] > strcat(suggested, "."PDF_OR_PS_EXT); > ^ > >seaview.cxx:3427:23: error: invalid suffix on literal; C++11 requires a space > between literal and identifier [-Wreserved-user-defined-literal] >pdf_form->label("Set "PDF_OR_PS" output options"); > ^ > >seaview.cxx:5003:16: error: invalid suffix on literal; C++11 requires a space > between literal and identifier [-Wreserved-user-defined-literal] > {"Prepare "PDF_OR_PS"", 0, file_menu_callback, 0, 0}, > ^ > >seaview.cxx:5004:8: error: invalid suffix on literal; C++11 requires a space > between literal and identifier [-Wreserved-user-defined-literal] > {""PDF_OR_PS" options...", 0, file_menu_callback, 0, FL_MENU_DIVIDER}, > ^ > >4 errors generated. >make: *** [Makefile:57: seaview.o] Error 1 >1 error generated. >make: *** [Makefile:57: treedraw.o] Error 1 >1 warning generated. > * ERROR: sci-biology/seaview-4.6::gentoo failed (compile phase): > * emake failed > * > * If you need support, post the output of `emerge --info '=sci-biology/seaview-4.6::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-biology/seaview-4.6::gentoo'`. > * The complete build log is located at '/var/log/emerge-log/build/sci-biology/seaview-4.6:20200908-132640.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/seaview-4.6/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-biology/seaview-4.6/temp/environment'. > * Working directory: '/var/tmp/portage/sci-biology/seaview-4.6/work/seaview' > * S: '/var/tmp/portage/sci-biology/seaview-4.6/work/seaview'
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bug 741198
: 659162