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Gentoo's Bugzilla – Attachment 648534 Details for
Bug 731892
sci-biology/glimmer fails to link with LLD because of /usr/lib in the link command line
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build.log
build.log (text/plain), 156.30 KB, created by
Agostino Sarubbo
on 2020-07-09 11:55:45 UTC
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Description:
build.log
Filename:
MIME Type:
Creator:
Agostino Sarubbo
Created:
2020-07-09 11:55:45 UTC
Size:
156.30 KB
patch
obsolete
> * Package: sci-biology/glimmer-3.02b > * Repository: gentoo > * Maintainer: sci-biology@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox > > >@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ >This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; >This ebuild was merged at the following commit: >https://github.com/gentoo-mirror/gentoo/commit/deaaa519367448538a3a047f9ef4a2cb6b44a28d >@@@@@ END @@@@@ > >>>> Unpacking source... >>>> Unpacking glimmer302b.tar.gz to /var/tmp/portage/sci-biology/glimmer-3.02b/work >>>> Source unpacked in /var/tmp/portage/sci-biology/glimmer-3.02b/work >>>> Preparing source in /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02 ... > * Applying glimmer-3.02b-jobserver-fix.patch ... > [ ok ] > * Applying glimmer-3.02b-ldflags.patch ... > [ ok ] > * Applying glimmer-3.02b-rename_extract.patch ... > [ ok ] >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02 ... >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02 ... >make -j2 V=1 -C src CC=x86_64-pc-linux-gnu-clang CXX=x86_64-pc-linux-gnu-clang++ AR=llvm-ar 'CXXFLAGS=-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color' 'CFLAGS=-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color' 'LDFLAGS=-Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0' >make: Entering directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src' >* Make Target is all >##### Making Directory /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common all ##### >make[1]: Entering directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common' >if [ -e gene.cc ] ; then \ > /bin/sh -ec 'x86_64-pc-linux-gnu-clang++ -M -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc gene.cc \ > | sed '\''s/gene\\.o[ :]*/& gene.d/g'\'' > gene.d' ; \ > fi ; >if [ -e fasta.cc ] ; then \ > /bin/sh -ec 'x86_64-pc-linux-gnu-clang++ -M -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc fasta.cc \ > | sed '\''s/fasta\\.o[ :]*/& fasta.d/g'\'' > fasta.d' ; \ > fi ; >if [ -e delcher.cc ] ; then \ > /bin/sh -ec 'x86_64-pc-linux-gnu-clang++ -M -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc delcher.cc \ > | sed '\''s/delcher\\.o[ :]*/& delcher.d/g'\'' > delcher.d' ; \ > fi ; >@@@@@@@@@@@@@@@@@@@ delcher.cc @@@@@@@@@@@@@@@@@@@@@ >if [ -e delcher.cc ] ; then \ > x86_64-pc-linux-gnu-clang++ -D__cplusplus -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c \ > -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/delcher.o delcher.cc ; \ >else \ > /cm/cmtools/bin/links.pl /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj \ > " :/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj" delcher.o ; \ >fi ; >@@@@@@@@@@@@@@@@@@@ fasta.cc @@@@@@@@@@@@@@@@@@@@@ >if [ -e fasta.cc ] ; then \ > x86_64-pc-linux-gnu-clang++ -D__cplusplus -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c \ > -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/fasta.o fasta.cc ; \ >else \ > /cm/cmtools/bin/links.pl /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj \ > " :/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj" fasta.o ; \ >fi ; >In file included from <built-in>:411: ><command line>:1:9: warning: '__cplusplus' macro redefined [-Wmacro-redefined] >#define __cplusplus 1 > ^ ><built-in>:407:9: note: previous definition is here >#define __cplusplus 201402L > ^ >In file included from <built-in>:411: ><command line>:1:9: warning: '__cplusplus' macro redefined [-Wmacro-redefined] >#define __cplusplus 1 > ^ ><built-in>:407:9: note: previous definition is here >#define __cplusplus 201402L > ^ >1 warning generated. >@@@@@@@@@@@@@@@@@@@ gene.cc @@@@@@@@@@@@@@@@@@@@@ >if [ -e gene.cc ] ; then \ > x86_64-pc-linux-gnu-clang++ -D__cplusplus -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c \ > -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/gene.o gene.cc ; \ >else \ > /cm/cmtools/bin/links.pl /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj \ > " :/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj" gene.o ; \ >fi ; >1 warning generated. >In file included from <built-in>:411: ><command line>:1:9: warning: '__cplusplus' macro redefined [-Wmacro-redefined] >#define __cplusplus 1 > ^ ><built-in>:407:9: note: previous definition is here >#define __cplusplus 201402L > ^ >1 warning generated. >################### libGLMcommon.a ##################### >llvm-ar: [0;1;35mwarning: [0mcreating /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a >make[1]: Leaving directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common' >##### Making Directory /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM all ##### >make[1]: Entering directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM' >if [ -e score-fixed.cc ] ; then \ > /bin/sh -ec 'x86_64-pc-linux-gnu-clang++ -M -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc score-fixed.cc \ > | sed '\''s/score-fixed\\.o[ :]*/& score-fixed.d/g'\'' > score-fixed.d' ; \ > fi ; >if [ -e build-fixed.cc ] ; then \ > /bin/sh -ec 'x86_64-pc-linux-gnu-clang++ -M -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc build-fixed.cc \ > | sed '\''s/build-fixed\\.o[ :]*/& build-fixed.d/g'\'' > build-fixed.d' ; \ > fi ; >if [ -e build-icm.cc ] ; then \ > /bin/sh -ec 'x86_64-pc-linux-gnu-clang++ -M -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc build-icm.cc \ > | sed '\''s/build-icm\\.o[ :]*/& build-icm.d/g'\'' > build-icm.d' ; \ > fi ; >if [ -e icm.cc ] ; then \ > /bin/sh -ec 'x86_64-pc-linux-gnu-clang++ -M -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc icm.cc \ > | sed '\''s/icm\\.o[ :]*/& icm.d/g'\'' > icm.d' ; \ > fi ; >@@@@@@@@@@@@@@@@@@@ icm.cc @@@@@@@@@@@@@@@@@@@@@ >if [ -e icm.cc ] ; then \ > x86_64-pc-linux-gnu-clang++ -D__cplusplus -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c \ > -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/icm.o icm.cc ; \ >else \ > /cm/cmtools/bin/links.pl /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj \ > " :/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj" icm.o ; \ >fi ; >@@@@@@@@@@@@@@@@@@@ build-icm.cc @@@@@@@@@@@@@@@@@@@@@ >if [ -e build-icm.cc ] ; then \ > x86_64-pc-linux-gnu-clang++ -D__cplusplus -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c \ > -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/build-icm.o build-icm.cc ; \ >else \ > /cm/cmtools/bin/links.pl /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj \ > " :/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj" build-icm.o ; \ >fi ; >In file included from <built-in>:411: ><command line>:1:9: warning: '__cplusplus' macro redefined [-Wmacro-redefined] >#define __cplusplus 1 > ^ ><built-in>:407:9: note: previous definition is here >#define __cplusplus 201402L > ^ >In file included from <built-in>:411: ><command line>:1:9: warning: '__cplusplus' macro redefined [-Wmacro-redefined] >#define __cplusplus 1 > ^ ><built-in>:407:9: note: previous definition is here >#define __cplusplus 201402L > ^ >1 warning generated. >@@@@@@@@@@@@@@@@@@@ build-fixed.cc @@@@@@@@@@@@@@@@@@@@@ >if [ -e build-fixed.cc ] ; then \ > x86_64-pc-linux-gnu-clang++ -D__cplusplus -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c \ > -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/build-fixed.o build-fixed.cc ; \ >else \ > /cm/cmtools/bin/links.pl /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj \ > " :/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj" build-fixed.o ; \ >fi ; >In file included from <built-in>:411: ><command line>:1:9: warning: '__cplusplus' macro redefined [-Wmacro-redefined] >#define __cplusplus 1 > ^ ><built-in>:407:9: note: previous definition is here >#define __cplusplus 201402L > ^ >1 warning generated. >@@@@@@@@@@@@@@@@@@@ score-fixed.cc @@@@@@@@@@@@@@@@@@@@@ >if [ -e score-fixed.cc ] ; then \ > x86_64-pc-linux-gnu-clang++ -D__cplusplus -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c \ > -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/score-fixed.o score-fixed.cc ; \ >else \ > /cm/cmtools/bin/links.pl /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj \ > " :/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj" score-fixed.o ; \ >fi ; >In file included from <built-in>:411: ><command line>:1:9: warning: '__cplusplus' macro redefined [-Wmacro-redefined] >#define __cplusplus 1 > ^ ><built-in>:407:9: note: previous definition is here >#define __cplusplus 201402L > ^ >1 warning generated. >1 warning generated. >################### libGLMicm.a ##################### >llvm-ar: [0;1;35mwarning: [0mcreating /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMicm.a >++++++++++++++++++++ build-icm ++++++++++++++++++++++ >if [ -z "build-icm.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/build-icm -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-icm.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lGLMicm -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/build-icm; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/build-icm -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-icm.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lGLMicm -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/build-icm; fi; \ >fi ; >++++++++++++++++++++ build-fixed ++++++++++++++++++++++ >if [ -z "build-fixed.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/build-fixed -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-fixed.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lGLMicm -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/build-fixed; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/build-fixed -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-fixed.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lGLMicm -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/build-fixed; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0mbuild-icm.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >++++++++++++++++++++ score-fixed ++++++++++++++++++++++ >if [ -z "score-fixed.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/score-fixed -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib score-fixed.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lGLMicm -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/score-fixed; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/score-fixed -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib score-fixed.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lGLMicm -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/score-fixed; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0mbuild-fixed.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0mscore-fixed.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >make[1]: Leaving directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM' >##### Making Directory /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer all ##### >make[1]: Entering directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer' >if [ -e test.cc ] ; then \ > /bin/sh -ec 'x86_64-pc-linux-gnu-clang++ -M -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc test.cc \ > | sed '\''s/test\\.o[ :]*/& test.d/g'\'' > test.d' ; \ > fi ; >if [ -e long-orfs.cc ] ; then \ > /bin/sh -ec 'x86_64-pc-linux-gnu-clang++ -M -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc long-orfs.cc \ > | sed '\''s/long-orfs\\.o[ :]*/& long-orfs.d/g'\'' > long-orfs.d' ; \ > fi ; >if [ -e glimmer3.cc ] ; then \ > /bin/sh -ec 'x86_64-pc-linux-gnu-clang++ -M -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc glimmer3.cc \ > | sed '\''s/glimmer3\\.o[ :]*/& glimmer3.d/g'\'' > glimmer3.d' ; \ > fi ; >if [ -e anomaly.cc ] ; then \ > /bin/sh -ec 'x86_64-pc-linux-gnu-clang++ -M -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc anomaly.cc \ > | sed '\''s/anomaly\\.o[ :]*/& anomaly.d/g'\'' > anomaly.d' ; \ > fi ; >@@@@@@@@@@@@@@@@@@@ anomaly.cc @@@@@@@@@@@@@@@@@@@@@ >if [ -e anomaly.cc ] ; then \ > x86_64-pc-linux-gnu-clang++ -D__cplusplus -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c \ > -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/anomaly.o anomaly.cc ; \ >else \ > /cm/cmtools/bin/links.pl /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj \ > " :/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj" anomaly.o ; \ >fi ; >@@@@@@@@@@@@@@@@@@@ glimmer3.cc @@@@@@@@@@@@@@@@@@@@@ >if [ -e glimmer3.cc ] ; then \ > x86_64-pc-linux-gnu-clang++ -D__cplusplus -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c \ > -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/glimmer3.o glimmer3.cc ; \ >else \ > /cm/cmtools/bin/links.pl /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj \ > " :/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj" glimmer3.o ; \ >fi ; >In file included from <built-in>:411: ><command line>:1:9: warning: '__cplusplus' macro redefined [-Wmacro-redefined] >#define __cplusplus 1 > ^ ><built-in>:407:9: note: previous definition is here >#define __cplusplus 201402L > ^ >In file included from <built-in>:411: ><command line>:1:9: warning: '__cplusplus' macro redefined [-Wmacro-redefined] >#define __cplusplus 1 > ^ ><built-in>:407:9: note: previous definition is here >#define __cplusplus 201402L > ^ >1 warning generated. >@@@@@@@@@@@@@@@@@@@ long-orfs.cc @@@@@@@@@@@@@@@@@@@@@ >if [ -e long-orfs.cc ] ; then \ > x86_64-pc-linux-gnu-clang++ -D__cplusplus -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c \ > -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/long-orfs.o long-orfs.cc ; \ >else \ > /cm/cmtools/bin/links.pl /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj \ > " :/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj" long-orfs.o ; \ >fi ; >In file included from <built-in>:411: ><command line>:1:9: warning: '__cplusplus' macro redefined [-Wmacro-redefined] >#define __cplusplus 1 > ^ ><built-in>:407:9: note: previous definition is here >#define __cplusplus 201402L > ^ >1 warning generated. >@@@@@@@@@@@@@@@@@@@ test.cc @@@@@@@@@@@@@@@@@@@@@ >if [ -e test.cc ] ; then \ > x86_64-pc-linux-gnu-clang++ -D__cplusplus -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c \ > -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/test.o test.cc ; \ >else \ > /cm/cmtools/bin/links.pl /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj \ > " :/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj" test.o ; \ >fi ; >In file included from <built-in>:411: ><command line>:1:9: warning: '__cplusplus' macro redefined [-Wmacro-redefined] >#define __cplusplus 1 > ^ ><built-in>:407:9: note: previous definition is here >#define __cplusplus 201402L > ^ >1 warning generated. >++++++++++++++++++++ anomaly ++++++++++++++++++++++ >if [ -z "anomaly.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/anomaly -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib anomaly.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/anomaly; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/anomaly -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib anomaly.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/anomaly; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0manomaly.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >++++++++++++++++++++ long-orfs ++++++++++++++++++++++ >if [ -z "long-orfs.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/long-orfs -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib long-orfs.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/long-orfs; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/long-orfs -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib long-orfs.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/long-orfs; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0mlong-orfs.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >++++++++++++++++++++ test ++++++++++++++++++++++ >if [ -z "test.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/test -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib test.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/test; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/test -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib test.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/test; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0mtest.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >1 warning generated. >++++++++++++++++++++ glimmer3 ++++++++++++++++++++++ >if [ -z "glimmer3.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/glimmer3 -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib glimmer3.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMicm.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/glimmer3; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/glimmer3 -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib glimmer3.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMicm.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/glimmer3; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0mglimmer3.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >make[1]: Leaving directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer' >##### Making Directory /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util all ##### >make[1]: Entering directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util' >if [ -e window-acgt.cc ] ; then \ > /bin/sh -ec 'x86_64-pc-linux-gnu-clang++ -M -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc window-acgt.cc \ > | sed '\''s/window-acgt\\.o[ :]*/& window-acgt.d/g'\'' > window-acgt.d' ; \ > fi ; >if [ -e uncovered.cc ] ; then \ > /bin/sh -ec 'x86_64-pc-linux-gnu-clang++ -M -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc uncovered.cc \ > | sed '\''s/uncovered\\.o[ :]*/& uncovered.d/g'\'' > uncovered.d' ; \ > fi ; >if [ -e start-codon-distrib.cc ] ; then \ > /bin/sh -ec 'x86_64-pc-linux-gnu-clang++ -M -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc start-codon-distrib.cc \ > | sed '\''s/start-codon-distrib\\.o[ :]*/& start-codon-distrib.d/g'\'' > start-codon-distrib.d' ; \ > fi ; >if [ -e multi-extract.cc ] ; then \ > /bin/sh -ec 'x86_64-pc-linux-gnu-clang++ -M -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc multi-extract.cc \ > | sed '\''s/multi-extract\\.o[ :]*/& multi-extract.d/g'\'' > multi-extract.d' ; \ > fi ; >if [ -e extract.cc ] ; then \ > /bin/sh -ec 'x86_64-pc-linux-gnu-clang++ -M -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc extract.cc \ > | sed '\''s/extract\\.o[ :]*/& extract.d/g'\'' > extract.d' ; \ > fi ; >if [ -e entropy-score.cc ] ; then \ > /bin/sh -ec 'x86_64-pc-linux-gnu-clang++ -M -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc entropy-score.cc \ > | sed '\''s/entropy-score\\.o[ :]*/& entropy-score.d/g'\'' > entropy-score.d' ; \ > fi ; >if [ -e entropy-profile.cc ] ; then \ > /bin/sh -ec 'x86_64-pc-linux-gnu-clang++ -M -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc entropy-profile.cc \ > | sed '\''s/entropy-profile\\.o[ :]*/& entropy-profile.d/g'\'' > entropy-profile.d' ; \ > fi ; >@@@@@@@@@@@@@@@@@@@ entropy-profile.cc @@@@@@@@@@@@@@@@@@@@@ >if [ -e entropy-profile.cc ] ; then \ > x86_64-pc-linux-gnu-clang++ -D__cplusplus -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c \ > -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/entropy-profile.o entropy-profile.cc ; \ >else \ > /cm/cmtools/bin/links.pl /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj \ > " :/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj" entropy-profile.o ; \ >fi ; >@@@@@@@@@@@@@@@@@@@ entropy-score.cc @@@@@@@@@@@@@@@@@@@@@ >if [ -e entropy-score.cc ] ; then \ > x86_64-pc-linux-gnu-clang++ -D__cplusplus -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c \ > -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/entropy-score.o entropy-score.cc ; \ >else \ > /cm/cmtools/bin/links.pl /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj \ > " :/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj" entropy-score.o ; \ >fi ; >In file included from <built-in>:411: ><command line>:1:9: warning: '__cplusplus' macro redefined [-Wmacro-redefined] >#define __cplusplus 1 > ^ ><built-in>:407:9: note: previous definition is here >#define __cplusplus 201402L > ^ >In file included from <built-in>:411: ><command line>:1:9: warning: '__cplusplus' macro redefined [-Wmacro-redefined] >#define __cplusplus 1 > ^ ><built-in>:407:9: note: previous definition is here >#define __cplusplus 201402L > ^ >entropy-score.cc:157:33: warning: if statement has empty body [-Wempty-body] > if (line [n - 1] == '\n'); > ^ >entropy-score.cc:157:33: note: put the semicolon on a separate line to silence > this warning >1 warning generated. >@@@@@@@@@@@@@@@@@@@ extract.cc @@@@@@@@@@@@@@@@@@@@@ >if [ -e extract.cc ] ; then \ > x86_64-pc-linux-gnu-clang++ -D__cplusplus -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c \ > -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/extract.o extract.cc ; \ >else \ > /cm/cmtools/bin/links.pl /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj \ > " :/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj" extract.o ; \ >fi ; >In file included from <built-in>:411: ><command line>:1:9: warning: '__cplusplus' macro redefined [-Wmacro-redefined] >#define __cplusplus 1 > ^ ><built-in>:407:9: note: previous definition is here >#define __cplusplus 201402L > ^ >2 warnings generated. >@@@@@@@@@@@@@@@@@@@ multi-extract.cc @@@@@@@@@@@@@@@@@@@@@ >if [ -e multi-extract.cc ] ; then \ > x86_64-pc-linux-gnu-clang++ -D__cplusplus -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c \ > -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/multi-extract.o multi-extract.cc ; \ >else \ > /cm/cmtools/bin/links.pl /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj \ > " :/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj" multi-extract.o ; \ >fi ; >In file included from <built-in>:411: ><command line>:1:9: warning: '__cplusplus' macro redefined [-Wmacro-redefined] >#define __cplusplus 1 > ^ ><built-in>:407:9: note: previous definition is here >#define __cplusplus 201402L > ^ >1 warning generated. >@@@@@@@@@@@@@@@@@@@ start-codon-distrib.cc @@@@@@@@@@@@@@@@@@@@@ >if [ -e start-codon-distrib.cc ] ; then \ > x86_64-pc-linux-gnu-clang++ -D__cplusplus -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c \ > -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/start-codon-distrib.o start-codon-distrib.cc ; \ >else \ > /cm/cmtools/bin/links.pl /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj \ > " :/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj" start-codon-distrib.o ; \ >fi ; >In file included from <built-in>:411: ><command line>:1:9: warning: '__cplusplus' macro redefined [-Wmacro-redefined] >#define __cplusplus 1 > ^ ><built-in>:407:9: note: previous definition is here >#define __cplusplus 201402L > ^ >1 warning generated. >@@@@@@@@@@@@@@@@@@@ uncovered.cc @@@@@@@@@@@@@@@@@@@@@ >if [ -e uncovered.cc ] ; then \ > x86_64-pc-linux-gnu-clang++ -D__cplusplus -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c \ > -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/uncovered.o uncovered.cc ; \ >else \ > /cm/cmtools/bin/links.pl /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj \ > " :/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj" uncovered.o ; \ >fi ; >In file included from <built-in>:411: ><command line>:1:9: warning: '__cplusplus' macro redefined [-Wmacro-redefined] >#define __cplusplus 1 > ^ ><built-in>:407:9: note: previous definition is here >#define __cplusplus 201402L > ^ >1 warning generated. >@@@@@@@@@@@@@@@@@@@ window-acgt.cc @@@@@@@@@@@@@@@@@@@@@ >if [ -e window-acgt.cc ] ; then \ > x86_64-pc-linux-gnu-clang++ -D__cplusplus -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c \ > -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -I/../SYS/inc -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util -I/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/inc -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/window-acgt.o window-acgt.cc ; \ >else \ > /cm/cmtools/bin/links.pl /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj \ > " :/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj" window-acgt.o ; \ >fi ; >In file included from <built-in>:411: ><command line>:1:9: warning: '__cplusplus' macro redefined [-Wmacro-redefined] >#define __cplusplus 1 > ^ ><built-in>:407:9: note: previous definition is here >#define __cplusplus 201402L > ^ >1 warning generated. >++++++++++++++++++++ entropy-profile ++++++++++++++++++++++ >if [ -z "entropy-profile.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/entropy-profile -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-profile.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/entropy-profile; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/entropy-profile -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-profile.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/entropy-profile; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0mentropy-profile.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >++++++++++++++++++++ entropy-score ++++++++++++++++++++++ >if [ -z "entropy-score.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/entropy-score -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-score.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/entropy-score; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/entropy-score -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-score.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/entropy-score; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0mentropy-score.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >++++++++++++++++++++ glimmer_extract ++++++++++++++++++++++ >if [ -z "extract.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/glimmer_extract -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib extract.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/glimmer_extract; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/glimmer_extract -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib extract.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/glimmer_extract; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0mextract.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >++++++++++++++++++++ multi-extract ++++++++++++++++++++++ >if [ -z "multi-extract.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/multi-extract -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib multi-extract.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/multi-extract; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/multi-extract -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib multi-extract.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/multi-extract; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0mmulti-extract.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >++++++++++++++++++++ start-codon-distrib ++++++++++++++++++++++ >if [ -z "start-codon-distrib.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/start-codon-distrib -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib start-codon-distrib.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/start-codon-distrib; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/start-codon-distrib -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib start-codon-distrib.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/start-codon-distrib; fi; \ >fi ; >1 warning generated. >++++++++++++++++++++ uncovered ++++++++++++++++++++++ >if [ -z "uncovered.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/uncovered -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib uncovered.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/uncovered; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/uncovered -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib uncovered.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/uncovered; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0mstart-codon-distrib.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0muncovered.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >++++++++++++++++++++ window-acgt ++++++++++++++++++++++ >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >if [ -z "window-acgt.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/window-acgt -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib window-acgt.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/window-acgt; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/window-acgt -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib window-acgt.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/window-acgt; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0mwindow-acgt.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >make[1]: Leaving directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util' >* Make Target is all >##### Making Directory /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common all ##### >make[1]: Entering directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common' >make[1]: Nothing to be done for 'all'. >make[1]: Leaving directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common' >##### Making Directory /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM all ##### >make[1]: Entering directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM' >++++++++++++++++++++ build-icm ++++++++++++++++++++++ >if [ -z "build-icm.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/build-icm -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/build-icm.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMicm.a /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/build-icm; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/build-icm -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/build-icm.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMicm.a /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/build-icm; fi; \ >fi ; >++++++++++++++++++++ build-fixed ++++++++++++++++++++++ >if [ -z "build-fixed.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/build-fixed -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/build-fixed.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMicm.a /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/build-fixed; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/build-fixed -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/build-fixed.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMicm.a /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/build-fixed; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/build-icm.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >++++++++++++++++++++ score-fixed ++++++++++++++++++++++ >if [ -z "score-fixed.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/score-fixed -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/score-fixed.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMicm.a /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/score-fixed; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/score-fixed -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/score-fixed.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMicm.a /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/score-fixed; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/build-fixed.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/score-fixed.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >make[1]: Leaving directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM' >##### Making Directory /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer all ##### >make[1]: Entering directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer' >++++++++++++++++++++ anomaly ++++++++++++++++++++++ >if [ -z "anomaly.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/anomaly -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/anomaly.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/anomaly; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/anomaly -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/anomaly.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/anomaly; fi; \ >fi ; >++++++++++++++++++++ glimmer3 ++++++++++++++++++++++ >if [ -z "glimmer3.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/glimmer3 -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/glimmer3.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMicm.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/glimmer3; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/glimmer3 -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/glimmer3.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMicm.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/glimmer3; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/anomaly.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/glimmer3.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >++++++++++++++++++++ long-orfs ++++++++++++++++++++++ >if [ -z "long-orfs.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/long-orfs -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/long-orfs.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/long-orfs; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/long-orfs -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/long-orfs.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/long-orfs; fi; \ >fi ; >++++++++++++++++++++ test ++++++++++++++++++++++ >if [ -z "test.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/test -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/test.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/test; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/test -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/test.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/test; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/long-orfs.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/test.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >make[1]: Leaving directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer' >##### Making Directory /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util all ##### >make[1]: Entering directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util' >++++++++++++++++++++ entropy-profile ++++++++++++++++++++++ >if [ -z "entropy-profile.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/entropy-profile -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/entropy-profile.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/entropy-profile; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/entropy-profile -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/entropy-profile.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/entropy-profile; fi; \ >fi ; >++++++++++++++++++++ entropy-score ++++++++++++++++++++++ >if [ -z "entropy-score.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/entropy-score -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/entropy-score.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/entropy-score; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/entropy-score -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/entropy-score.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/entropy-score; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/entropy-profile.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/entropy-score.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >++++++++++++++++++++ glimmer_extract ++++++++++++++++++++++ >if [ -z "extract.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/glimmer_extract -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/extract.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/glimmer_extract; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/glimmer_extract -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/extract.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/glimmer_extract; fi; \ >fi ; >++++++++++++++++++++ multi-extract ++++++++++++++++++++++ >if [ -z "multi-extract.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/multi-extract -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/multi-extract.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/multi-extract; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/multi-extract -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/multi-extract.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/multi-extract; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/extract.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/multi-extract.o is incompatible with elf_x86_64 >++++++++++++++++++++ start-codon-distrib ++++++++++++++++++++++ >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >if [ -z "start-codon-distrib.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/start-codon-distrib -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/start-codon-distrib.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/start-codon-distrib; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/start-codon-distrib -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/start-codon-distrib.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/start-codon-distrib; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >++++++++++++++++++++ uncovered ++++++++++++++++++++++ >if [ -z "uncovered.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/uncovered -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/uncovered.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/uncovered; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/uncovered -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/uncovered.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/uncovered; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/start-codon-distrib.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >++++++++++++++++++++ window-acgt ++++++++++++++++++++++ >if [ -z "window-acgt.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/window-acgt -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/window-acgt.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/window-acgt; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/window-acgt -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/window-acgt.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/window-acgt; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/uncovered.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/window-acgt.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >make[1]: Leaving directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util' >* Make Target is all >##### Making Directory /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common all ##### >make[1]: Entering directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common' >make[1]: Nothing to be done for 'all'. >make[1]: Leaving directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Common' >##### Making Directory /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM all ##### >make[1]: Entering directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM' >++++++++++++++++++++ build-icm ++++++++++++++++++++++ >if [ -z "build-icm.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/build-icm -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/build-icm.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMicm.a /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/build-icm; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/build-icm -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/build-icm.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMicm.a /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/build-icm; fi; \ >fi ; >++++++++++++++++++++ build-fixed ++++++++++++++++++++++ >if [ -z "build-fixed.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/build-fixed -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/build-fixed.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMicm.a /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/build-fixed; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/build-fixed -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/build-fixed.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMicm.a /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/build-fixed; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/build-icm.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >++++++++++++++++++++ score-fixed ++++++++++++++++++++++ >if [ -z "score-fixed.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/score-fixed -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/score-fixed.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMicm.a /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/score-fixed; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/score-fixed -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/score-fixed.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMicm.a /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/score-fixed; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/build-fixed.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/score-fixed.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >make[1]: Leaving directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/ICM' >##### Making Directory /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer all ##### >make[1]: Entering directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer' >++++++++++++++++++++ anomaly ++++++++++++++++++++++ >if [ -z "anomaly.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/anomaly -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/anomaly.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/anomaly; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/anomaly -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/anomaly.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/anomaly; fi; \ >fi ; >++++++++++++++++++++ glimmer3 ++++++++++++++++++++++ >if [ -z "glimmer3.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/glimmer3 -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/glimmer3.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMicm.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/glimmer3; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/glimmer3 -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/glimmer3.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMicm.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/glimmer3; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/anomaly.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/glimmer3.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >++++++++++++++++++++ long-orfs ++++++++++++++++++++++ >if [ -z "long-orfs.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/long-orfs -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/long-orfs.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/long-orfs; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/long-orfs -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/long-orfs.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/long-orfs; fi; \ >fi ; >++++++++++++++++++++ test ++++++++++++++++++++++ >if [ -z "test.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/test -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/test.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/test; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/test -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/test.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/test; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/long-orfs.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/test.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >make[1]: Leaving directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Glimmer' >##### Making Directory /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util all ##### >make[1]: Entering directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util' >++++++++++++++++++++ entropy-profile ++++++++++++++++++++++ >if [ -z "entropy-profile.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/entropy-profile -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/entropy-profile.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/entropy-profile; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/entropy-profile -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/entropy-profile.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/entropy-profile; fi; \ >fi ; >++++++++++++++++++++ entropy-score ++++++++++++++++++++++ >if [ -z "entropy-score.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/entropy-score -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/entropy-score.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/entropy-score; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/entropy-score -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/entropy-score.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/entropy-score; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/entropy-profile.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/entropy-score.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >++++++++++++++++++++ glimmer_extract ++++++++++++++++++++++ >if [ -z "extract.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/glimmer_extract -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/extract.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/glimmer_extract; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/glimmer_extract -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/extract.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/glimmer_extract; fi; \ >fi ; >++++++++++++++++++++ multi-extract ++++++++++++++++++++++ >if [ -z "multi-extract.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/multi-extract -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/multi-extract.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/multi-extract; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/multi-extract -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/multi-extract.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/multi-extract; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/extract.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/multi-extract.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >++++++++++++++++++++ start-codon-distrib ++++++++++++++++++++++ >if [ -z "start-codon-distrib.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/start-codon-distrib -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/start-codon-distrib.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/start-codon-distrib; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/start-codon-distrib -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/start-codon-distrib.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/start-codon-distrib; fi; \ >fi ; >++++++++++++++++++++ uncovered ++++++++++++++++++++++ >if [ -z "uncovered.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/uncovered -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/uncovered.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/uncovered; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/uncovered -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/uncovered.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/uncovered; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/start-codon-distrib.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/uncovered.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >++++++++++++++++++++ window-acgt ++++++++++++++++++++++ >if [ -z "window-acgt.o" ] ; then \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/window-acgt -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/window-acgt.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/window-acgt; fi; \ >else \ > cd /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj; \ > if x86_64-pc-linux-gnu-clang++ -o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/window-acgt -Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0 \ > -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/window-acgt.o /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/lib/libGLMcommon.a \ > -lm ; then \ > true; else rm -f /var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/bin/window-acgt; fi; \ >fi ; >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crt1.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crti.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtbegin.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/obj/window-acgt.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libstdc++.so is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/libgcc_s.so.1 is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/crtend.o is incompatible with elf_x86_64 >ld.lld: [0;31merror: [0m/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64/crtn.o is incompatible with elf_x86_64 >clang-10: [0;1;31merror: [0mlinker command failed with exit code 1 (use -v to see invocation)[0m >make[1]: Leaving directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src/Util' >make: Leaving directory '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02/src' >>>> Source compiled. >>>> Test phase [not enabled]: sci-biology/glimmer-3.02b > >>>> Install sci-biology/glimmer-3.02b into /var/tmp/portage/sci-biology/glimmer-3.02b/image/ >rm: cannot remove 'bin/test': No such file or directory > * ERROR: sci-biology/glimmer-3.02b::gentoo failed (install phase): > * (no error message) > * > * Call stack: > * ebuild.sh, line 125: Called src_install > * environment, line 1908: Called die > * The specific snippet of code: > * rm bin/test || die; > * > * If you need support, post the output of `emerge --info '=sci-biology/glimmer-3.02b::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-biology/glimmer-3.02b::gentoo'`. > * The complete build log is located at '/var/log/emerge-log/build/sci-biology/glimmer-3.02b:20200708-161353.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/glimmer-3.02b/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-biology/glimmer-3.02b/temp/environment'. > * Working directory: '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02' > * S: '/var/tmp/portage/sci-biology/glimmer-3.02b/work/glimmer3.02' > > > >emerge --info: >Portage 2.3.103 (python 3.7.8-final-0, default/linux/amd64/17.1, gcc-10.1.0, glibc-2.31-r5, 5.4.0-1015-aws x86_64) >================================================================= >System uname: Linux-5.4.0-1015-aws-x86_64-AMD_EPYC_7571-with-gentoo-2.7 >KiB Mem: 7895548 total, 2137588 free >KiB Swap: 0 total, 0 free >Timestamp of repository gentoo: Thu, 09 Jul 2020 10:35:22 +0000 >sh bash 5.0_p17 >ld GNU ld (Gentoo 2.34 p4) 2.34.0 >app-shells/bash: 5.0_p17::gentoo >dev-lang/perl: 5.30.3-r2::gentoo >dev-lang/python: 2.7.18::gentoo, 3.7.8-r1::gentoo, 3.8.3-r1::gentoo, 3.9.0_beta4::gentoo >dev-util/cmake: 3.18.0_rc3::gentoo >sys-apps/baselayout: 2.7::gentoo >sys-apps/openrc: 0.42.1::gentoo >sys-apps/sandbox: 2.20::gentoo >sys-devel/autoconf: 2.69-r5::gentoo >sys-devel/automake: 1.16.2::gentoo >sys-devel/binutils: 2.34-r1::gentoo >sys-devel/gcc: 10.1.0-r2::gentoo >sys-devel/gcc-config: 2.3.1::gentoo >sys-devel/libtool: 2.4.6-r6::gentoo >sys-devel/make: 4.3::gentoo >sys-kernel/linux-headers: 5.7::gentoo (virtual/os-headers) >sys-libs/glibc: 2.31-r5::gentoo >Repositories: > >gentoo > location: /usr/portage > sync-type: rsync > sync-uri: rsync://rsync.gentoo.org/gentoo-portage > priority: -1000 > sync-rsync-verify-max-age: 24 > sync-rsync-verify-jobs: 1 > sync-rsync-verify-metamanifest: yes > sync-rsync-extra-opts: > >ACCEPT_KEYWORDS="amd64 ~amd64" >ACCEPT_LICENSE="*" >CBUILD="x86_64-pc-linux-gnu" >CC="x86_64-pc-linux-gnu-clang" >CFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color" >CHOST="x86_64-pc-linux-gnu" >CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" >CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" >CXX="x86_64-pc-linux-gnu-clang++" >CXXFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color" >DISTDIR="/usr/portage/distfiles" >EMERGE_DEFAULT_OPTS="--with-bdeps=y --binpkg-respect-use=y -1 -b -k" >ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" >FCFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color" >FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg collision-protect config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" >FFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color" >GENTOO_MIRRORS="http://distfiles.gentoo.org" >LANG="C.UTF-8" >LDFLAGS="-Wl,-O1 -Wl,--as-needed -fuse-ld=lld -Wl,--defsym=__gentoo_check_ldflags__=0" >MAKEOPTS="-j2 V=1" >PKGDIR="/root/.packages" >PORTAGE_CONFIGROOT="/" >PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" >PORTAGE_TMPDIR="/var/tmp" >USE="acl amd64 berkdb bzip2 cli crypt dri fortran gdbm iconv ipv6 libtirpc multilib ncurses nls nptl openmp pam pcre readline seccomp split-usr ssl tcpd unicode xattr zlib" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_7" PYTHON_TARGETS="python2_7 python3_7" RUBY_TARGETS="ruby25" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" >Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS >
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bug 731892
: 648534