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Gentoo's Bugzilla – Attachment 647642 Details for
Bug 730780
sci-biology/blat-34-r2 does not respect LDFLAGS
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build.log
build.log (text/plain), 131.50 KB, created by
Agostino Sarubbo
on 2020-07-05 07:49:48 UTC
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hide
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Description:
build.log
Filename:
MIME Type:
Creator:
Agostino Sarubbo
Created:
2020-07-05 07:49:48 UTC
Size:
131.50 KB
patch
obsolete
> * Package: sci-biology/blat-34-r2 > * Repository: gentoo > * Maintainer: sci-biology@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox > > >@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ >This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; >This ebuild was merged at the following commit: >https://github.com/gentoo/gentoo/commit/51a987701a7e0541fde86acad1cd9de3c6e6272c >@@@@@ END @@@@@ > >>>> Unpacking source... >>>> Unpacking blatSrc34.zip to /var/tmp/portage/sci-biology/blat-34-r2/work >>>> Source unpacked in /var/tmp/portage/sci-biology/blat-34-r2/work >>>> Preparing source in /var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc ... > * Applying blat-34-fix-build-system.patch ... > [ ok ] > * Applying blat-34-fno-common.patch ... > [ ok ] >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc ... >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc ... >make -j4 V=1 >make -C lib >make[1]: Entering directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/lib' >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o aliType.o -c aliType.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o apacheLog.o -c apacheLog.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o asParse.o -c asParse.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axt.o -c axt.c >apacheLog.c:8:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 8 | static char const rcsid[] = "$Id: apacheLog.c,v 1.1 2005/09/03 02:07:40 kent Exp $"; > | ^~~~~ >asParse.c:8:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 8 | static char const rcsid[] = "$Id: asParse.c,v 1.6 2007/02/11 21:43:15 kent Exp $"; > | ^~~~~ >aliType.c:5:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 5 | static char const rcsid[] = "$Id: aliType.c,v 1.4 2003/05/06 07:33:41 kate Exp $"; > | ^~~~~ >axt.c:23:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 23 | static char const rcsid[] = "$Id: axt.c,v 1.47 2006/06/18 23:11:58 kate Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axtAffine.o -c axtAffine.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o base64.o -c base64.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bits.o -c bits.c >axtAffine.c:10:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 10 | static char const rcsid[] = "$Id: axtAffine.c,v 1.7 2005/04/10 14:41:20 markd Exp $"; > | ^~~~~ >bits.c:9:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 9 | static char const rcsid[] = "$Id: bits.c,v 1.19 2006/02/28 05:40:46 markd Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o binRange.o -c binRange.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o blastOut.o -c blastOut.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o blastParse.o -c blastParse.c >binRange.c:16:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 16 | static char const rcsid[] = "$Id: binRange.c,v 1.20 2006/07/01 05:01:25 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o boxClump.o -c boxClump.c >blastOut.c:9:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 9 | static char const rcsid[] = "$Id: blastOut.c,v 1.26 2006/03/10 17:43:36 angie Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o boxLump.o -c boxLump.c >boxClump.c:9:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 9 | static char const rcsid[] = "$Id: boxClump.c,v 1.5 2005/01/10 00:11:34 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o browserGfx.o -c browserGfx.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o cda.o -c cda.c >browserGfx.c:9:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 9 | static char const rcsid[] = "$Id: browserGfx.c,v 1.8 2006/05/08 09:43:31 aamp Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chain.o -c chain.c >cda.c:14:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 14 | static char const rcsid[] = "$Id: cda.c,v 1.6 2003/05/06 07:33:41 kate Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainBlock.o -c chainBlock.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainConnect.o -c chainConnect.c >chain.c:11:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 11 | static char const rcsid[] = "$Id: chain.c,v 1.25 2007/02/19 18:29:32 kent Exp $"; > | ^~~~~ >chainBlock.c: In function âfindBestPredecessorsâ: >chainBlock.c:290:16: warning: variable âbestLeafâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 290 | struct kdLeaf *bestLeaf = NULL; > | ^~~~~~~~ >At top level: >chainBlock.c:12:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 12 | static char const rcsid[] = "$Id: chainBlock.c,v 1.17 2005/04/10 14:41:21 markd Exp $"; > | ^~~~~ >chainConnect.c:10:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 10 | static char const rcsid[] = "$Id: chainConnect.c,v 1.3 2005/08/07 23:25:26 baertsch Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainToAxt.o -c chainToAxt.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainToPsl.o -c chainToPsl.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o cheapcgi.o -c cheapcgi.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o codebias.o -c codebias.c >chainToAxt.c:10:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 10 | static char const rcsid[] = "$Id: chainToAxt.c,v 1.4 2005/04/10 14:41:21 markd Exp $"; > | ^~~~~ >chainToPsl.c:11:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 11 | static char const rcsid[] = "$Id: chainToPsl.c,v 1.5 2005/04/10 14:41:21 markd Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o colHash.o -c colHash.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o common.o -c common.c >codebias.c: In function âcodonFindFrameâ: >codebias.c:105:8: warning: variable âlogProbsâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 105 | double logProbs[3]; > | ^~~~~~~~ >At top level: >codebias.c:11:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 11 | static char const rcsid[] = "$Id: codebias.c,v 1.6 2005/04/10 14:41:21 markd Exp $"; > | ^~~~~ >cheapcgi.c: In function âcgiParseMultipartâ: >cheapcgi.c:172:75: warning: variable âctâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 172 | = NULL, *cdMain = NULL, *cdName = NULL, *cdFileName = NULL, *ct = NULL; > | ^~ > >At top level: >cheapcgi.c:15:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 15 | static char const rcsid[] = "$Id: cheapcgi.c,v 1.85 2006/12/19 18:49:52 kent Exp $"; > | ^~~~~ >colHash.c:8:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 8 | static char const rcsid[] = "$Id: colHash.c,v 1.3 2003/05/06 07:33:41 kate Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o correlate.o -c correlate.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dgRange.o -c dgRange.c >common.c: In function âfirstWordInFileâ: >common.c:1695:1: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 1695 | fgets(wordBuf, wordBufSize, f); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >At top level: >common.c:12:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 12 | static char const rcsid[] = "$Id: common.c,v 1.108 2007/03/30 00:12:11 markd Exp $"; > | ^~~~~ >dgRange.c:8:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 8 | static char const rcsid[] = "$Id: dgRange.c,v 1.3 2003/05/06 07:33:42 kate Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o diGraph.o -c diGraph.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dlist.o -c dlist.c >diGraph.c:7:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 7 | static char const rcsid[] = "$Id: diGraph.c,v 1.9 2005/08/17 03:01:29 galt Exp $"; > | ^~~~~ >dlist.c:8:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 8 | static char const rcsid[] = "$Id: dlist.c,v 1.11 2005/07/04 18:44:09 markd Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dnaLoad.o -c dnaLoad.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dnaMarkov.o -c dnaMarkov.c >dnaLoad.c:10:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 10 | static char const rcsid[] = "$Id: dnaLoad.c,v 1.8 2005/03/28 17:21:28 hiram Exp $"; > | ^~~~~ >dnaMarkov.c:10:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 10 | static char const rcsid[] = "$Id: dnaMarkov.c,v 1.4 2005/04/10 14:41:22 markd Exp $"; > | ^~~~~ >In file included from diGraph.c:2: >diGraph.c: In function âdgSwapEdgesâ: >../inc/common.h:350:19: warning: âcon2â may be used uninitialized in this function []8;;https://gcc.gnu.org/onlinedocs/gfortran/Error-and-Warning-Options.html#index-Wmaybe-uninitialized-Wmaybe-uninitialized]8;;] > 350 | ((node)->next = *(listPt), *(listPt) = (node)) > | ^ >diGraph.c:689:29: note: âcon2â was declared here > 689 | struct dgConnection *con1, *con2; > | ^~~~ >In file included from diGraph.c:2: >../inc/common.h:350:19: warning: âcon1â may be used uninitialized in this function []8;;https://gcc.gnu.org/onlinedocs/gfortran/Error-and-Warning-Options.html#index-Wmaybe-uninitialized-Wmaybe-uninitialized]8;;] > 350 | ((node)->next = *(listPt), *(listPt) = (node)) > | ^ >diGraph.c:689:22: note: âcon1â was declared here > 689 | struct dgConnection *con1, *con2; > | ^~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dnaseq.o -c dnaseq.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dnautil.o -c dnautil.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dnaMotif.o -c dnaMotif.c >dnaseq.c:12:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 12 | static char const rcsid[] = "$Id: dnaseq.c,v 1.19 2005/11/10 03:40:34 kent Exp $"; > | ^~~~~ >dnautil.c: In function âfindHeadPolyTMaybeMaskâ: >dnautil.c:913:5: warning: variable âpastPolyâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 913 | int pastPoly = 0; > | ^~~~~~~~ >At top level: >dnautil.c:18:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 18 | static char const rcsid[] = "$Id: dnautil.c,v 1.49 2007/03/14 04:54:55 kent Exp $"; > | ^~~~~ >dnaMotif.c:12:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 12 | static char const rcsid[] = "$Id: dnaMotif.c,v 1.4 2006/09/14 21:08:24 braney Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dtdParse.o -c dtdParse.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dystring.o -c dystring.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o emblParse.o -c emblParse.c >dystring.c:9:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 9 | static char const rcsid[] = "$Id: dystring.c,v 1.22 2006/02/02 16:24:24 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o errabort.o -c errabort.c >emblParse.c:52:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 52 | static char const rcsid[] = "$Id: emblParse.c,v 1.3 2003/05/06 07:33:42 kate Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o errCatch.o -c errCatch.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fa.o -c fa.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ffAli.o -c ffAli.c >errabort.c:18:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 18 | static char const rcsid[] = "$Id: errabort.c,v 1.13 2004/11/10 00:10:50 markd Exp $"; > | ^~~~~ >errCatch.c:22:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 22 | static char const rcsid[] = "$Id: errCatch.c,v 1.2 2006/08/10 01:02:47 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ffScore.o -c ffScore.c >fa.c: In function âfaReadSeqâ: >fa.c:278:1: warning: ignoring return value of âreadâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 278 | read(fd, s, maxSize); > | ^~~~~~~~~~~~~~~~~~~~ >At top level: >fa.c:15:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 15 | static char const rcsid[] = "$Id: fa.c,v 1.37 2007/02/20 18:50:21 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o filePath.o -c filePath.c >ffAli.c:12:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 12 | static char const rcsid[] = "$Id: ffAli.c,v 1.9 2004/02/13 09:33:32 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fixColor.o -c fixColor.c >ffScore.c:8:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 8 | static char const rcsid[] = "$Id: ffScore.c,v 1.5 2003/10/21 22:06:32 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o flydna.o -c flydna.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fof.o -c fof.c >fixColor.c:5:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 5 | static char const rcsid[] = "$Id: fixColor.c,v 1.3 2003/05/06 07:33:42 kate Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fuzzyShow.o -c fuzzyShow.c >flydna.c:15:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 15 | static char const rcsid[] = "$Id: flydna.c,v 1.4 2003/05/06 07:33:42 kate Exp $"; > | ^~~~~ >fof.c: In function âfofMakeâ: >fof.c:481:16: warning: variable âitemSizeâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 481 | int i, fileIx, itemSize; > | ^~~~~~~~ >At top level: >fof.c:10:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 10 | static char const rcsid[] = "$Id: fof.c,v 1.7 2006/03/10 17:43:36 angie Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gapCalc.o -c gapCalc.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gdf.o -c gdf.c >fuzzyShow.c: In function âffShAliPartâ: >fuzzyShow.c:101:5: warning: variable âcharsInLineâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 101 | int charsInLine; > | ^~~~~~~~~~~ >At top level: >fuzzyShow.c:15:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 15 | static char const rcsid[] = "$Id: fuzzyShow.c,v 1.23 2007/03/27 23:21:25 angie Exp $"; > | ^~~~~ >gdf.c:9:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 9 | static char const rcsid[] = "$Id: gdf.c,v 1.4 2003/05/06 07:33:42 kate Exp $"; > | ^~~~~ >gapCalc.c:8:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 8 | static char const rcsid[] = "$Id: gapCalc.c,v 1.4 2006/06/18 23:09:36 kate Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gemfont.o -c gemfont.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfNet.o -c gfNet.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gff.o -c gff.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfxPoly.o -c gfxPoly.c >gemfont.c:9:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 9 | static char const rcsid[] = "$Id: gemfont.c,v 1.9 2006/06/20 18:17:38 hiram Exp $"; > | ^~~~~ >gfNet.c:8:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 8 | static char const rcsid[] = "$Id: gfNet.c,v 1.8 2004/06/01 16:49:03 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gifcomp.o -c gifcomp.c >gff.c:13:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 13 | static char const rcsid[] = "$Id: gff.c,v 1.21 2007/02/01 00:43:16 kate Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gifdecomp.o -c gifdecomp.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gifLabel.o -c gifLabel.c >gifcomp.c:59:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 59 | static char const rcsid[] = "$Id: gifcomp.c,v 1.7 2003/05/21 21:03:22 kent Exp $"; > | ^~~~~ >gifdecomp.c:22:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 22 | static char const rcsid[] = "$Id: gifdecomp.c,v 1.3 2003/05/06 07:33:42 kate Exp $"; > | ^~~~~ >gifLabel.c:7:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 7 | static char const rcsid[] = "$Id: gifLabel.c,v 1.7 2005/06/06 20:20:10 galt Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gifread.o -c gifread.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gifwrite.o -c gifwrite.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hash.o -c hash.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o histogram.o -c histogram.c >gifread.c:8:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 8 | static char const rcsid[] = "$Id: gifread.c,v 1.4 2005/04/10 14:41:23 markd Exp $"; > | ^~~~~ >gifwrite.c:7:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 7 | static char const rcsid[] = "$Id: gifwrite.c,v 1.6 2003/05/21 21:02:22 kent Exp $"; > | ^~~~~ >hash.c:12:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 12 | static char const rcsid[] = "$Id: hash.c,v 1.36 2007/04/14 17:07:27 markd Exp $"; > | ^~~~~ >histogram.c:6:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 6 | static char const rcsid[] = "$Id: histogram.c,v 1.4 2004/09/14 23:43:58 hiram Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hmmPfamParse.o -c hmmPfamParse.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hmmstats.o -c hmmstats.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o htmlPage.o -c htmlPage.c >hmmPfamParse.c:9:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 9 | static char const rcsid[] = "$Id: hmmPfamParse.c,v 1.3 2007/03/23 16:38:40 kent Exp $"; > | ^~~~~ >hmmstats.c:10:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 10 | static char const rcsid[] = "$Id: hmmstats.c,v 1.4 2003/05/06 07:33:42 kate Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o htmshell.o -c htmshell.c >htmlPage.c: In function âhtmlSlurpWithCookiesâ: >htmlPage.c:903:1: warning: ignoring return value of âwriteâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 903 | write(sd, dyHeader->string, dyHeader->stringSize); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >htmlPage.c: In function âhtmlPageFromFormâ: >htmlPage.c:1380:5: warning: ignoring return value of âwriteâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 1380 | write(sd, dyHeader->string, dyHeader->stringSize); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >htmlPage.c:1390:5: warning: ignoring return value of âwriteâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 1390 | write(sd, dyHeader->string, dyHeader->stringSize); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >htmlPage.c:1391:5: warning: ignoring return value of âwriteâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 1391 | write(sd, cgiVars, contentLength); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o internet.o -c internet.c >At top level: >htmlPage.c:26:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 26 | static char const rcsid[] = "$Id: htmlPage.c,v 1.32 2006/07/29 00:17:28 galt Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o intExp.o -c intExp.c >htmshell.c:20:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 20 | static char const rcsid[] = "$Id: htmshell.c,v 1.32 2006/12/13 18:17:55 angie Exp $"; > | ^~~~~ >internet.c:6:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 6 | static char const rcsid[] = "$Id: internet.c,v 1.10 2005/04/10 14:41:23 markd Exp $"; > | ^~~~~ >intExp.c:10:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 10 | static char const rcsid[] = "$Id: intExp.c,v 1.6 2003/05/06 07:33:43 kate Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o jointalign.o -c jointalign.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o jpegSize.o -c jpegSize.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o keys.o -c keys.c >jointalign.c:10:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 10 | static char const rcsid[] = "$Id: jointalign.c,v 1.11 2003/05/06 07:33:43 kate Exp $"; > | ^~~~~ >keys.c:11:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 11 | static char const rcsid[] = "$Id: keys.c,v 1.10 2005/04/10 14:41:23 markd Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o kxTok.o -c kxTok.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o linefile.o -c linefile.c >kxTok.c:11:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 11 | static char const rcsid[] = "$Id: kxTok.c,v 1.10 2004/11/05 23:08:58 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o localmem.o -c localmem.c >linefile.c:16:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 16 | static char const rcsid[] = "$Id: linefile.c,v 1.54 2007/03/23 08:12:42 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o log.o -c log.c >localmem.c:14:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 14 | static char const rcsid[] = "$Id: localmem.c,v 1.10 2005/04/11 07:20:03 markd Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o maf.o -c maf.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mafFromAxt.o -c mafFromAxt.c >maf.c: In function âmafFlipStrandâ: >maf.c:672:5: warning: this âifâ clause does not guard... []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wmisleading-indentation-Wmisleading-indentation]8;;] > 672 | if (mc->text != NULL) > | ^~ >maf.c:674:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the âifâ > 674 | if (mc->quality != NULL) > | ^~ >At top level: >maf.c:12:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 12 | static char const rcsid[] = "$Id: maf.c,v 1.34 2007/04/12 18:54:23 rico Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mafScore.o -c mafScore.c >mafFromAxt.c:6:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 6 | static char const rcsid[] = "$Id: mafFromAxt.c,v 1.4 2003/05/17 23:47:15 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o md5.o -c md5.c >mafScore.c:8:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 8 | static char const rcsid[] = "$Id: mafScore.c,v 1.9 2005/11/23 17:20:50 braney Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mgTinyFont.o -c mgTinyFont.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mgSmallFont.o -c mgSmallFont.c >md5.c:10:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 10 | static char const rcsid[] = "$Id: md5.c,v 1.4 2003/05/06 07:33:43 kate Exp $"; > | ^~~~~ >mgTinyFont.c:8:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 8 | static char const rcsid[] = "$Id: mgTinyFont.c,v 1.4 2005/12/15 20:33:55 hiram Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mgMediumFont.o -c mgMediumFont.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mgLargeFont.o -c mgLargeFont.c >mgSmallFont.c:6:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 6 | static char const rcsid[] = "$Id: mgSmallFont.c,v 1.4 2005/12/15 20:33:55 hiram Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mgHugeFont.o -c mgHugeFont.c >mgMediumFont.c:3:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 3 | static char const rcsid[] = "$Id: mgMediumFont.c,v 1.5 2005/12/15 20:33:55 hiram Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o memalloc.o -c memalloc.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o memgfx.o -c memgfx.c >mgLargeFont.c:3:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 3 | static char const rcsid[] = "$Id: mgLargeFont.c,v 1.5 2005/12/15 20:33:55 hiram Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mgCircle.o -c mgCircle.c >memalloc.c:16:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 16 | static char const rcsid[] = "$Id: memalloc.c,v 1.30 2007/03/07 01:46:43 angie Exp $"; > | ^~~~~ >memgfx.c:15:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 15 | static char const rcsid[] = "$Id: memgfx.c,v 1.47 2007/04/15 00:33:35 galt Exp $"; > | ^~~~~ >mgHugeFont.c:3:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 3 | static char const rcsid[] = "$Id: mgHugeFont.c,v 1.5 2005/12/15 20:18:30 hiram Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mgPolygon.o -c mgPolygon.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mime.o -c mime.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o net.o -c net.c >mime.c: In function âparseMultiPartsâ: >mime.c:601:13: warning: variable âtoobigâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 601 | boolean toobig=FALSE; > | ^~~~~~ >At top level: >mime.c:19:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 19 | static char const rcsid[] = "$Id: mime.c,v 1.13 2006/06/20 18:31:24 galt Exp $"; > | ^~~~~ >net.c: In function ânetSkipHttpHeaderLinesCatchâ: >net.c:699:8: warning: variable âversionâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 699 | char *version, *code; > | ^~~~~~~ >net.c:673:7: warning: variable âheaderValâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 673 | char *headerVal = NULL; > | ^~~~~~~~~ >net.c:672:7: warning: variable âheaderNameâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 672 | char *headerName = NULL; > | ^~~~~~~~~~ >net.c: In function ânetSkipHttpHeaderLinesâ: >net.c:775:8: warning: variable âversionâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 775 | char *version, *code; > | ^~~~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o nib.o -c nib.c >net.c: In function âsendFtpCommandâ: >net.c:391:1: warning: ignoring return value of âwriteâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 391 | write(sd, cmd, strlen(cmd)); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ >net.c: In function ânetHttpConnectâ: >net.c:555:1: warning: ignoring return value of âwriteâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 555 | write(sd, dy->string, dy->stringSize); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >net.c: In function ânetOpenHttpExtâ: >net.c:569:5: warning: ignoring return value of âwriteâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 569 | write(sd, "\r\n", 2); > | ^~~~~~~~~~~~~~~~~~~~ >net.c: In function ânetHttpGetâ: >net.c:1153:1: warning: ignoring return value of âwriteâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 1153 | write(lf->fd, dy->string, dy->stringSize); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >At top level: >net.c:17:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 17 | static char const rcsid[] = "$Id: net.c,v 1.55 2006/10/06 22:17:38 hiram Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o nibTwo.o -c nibTwo.c >nib.c:13:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 13 | static char const rcsid[] = "$Id: nib.c,v 1.24 2007/03/13 20:43:05 kent Exp $"; > | ^~~~~ >nibTwo.c:11:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 11 | static char const rcsid[] = "$Id: nibTwo.c,v 1.5 2006/03/10 17:43:37 angie Exp $"; > | ^~~~~ >In file included from /usr/include/string.h:495, > from ../inc/common.h:33, > from net.c:6: >In function âstrncpyâ, > inlined from ânetParseUrlâ at net.c:268:5: >/usr/include/bits/string_fortified.h:106:10: warning: â__builtin_strncpyâ output may be truncated copying 16 bytes from a string of length 1023 []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation-Wstringop-truncation]8;;] > 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >In function âstrncpyâ, > inlined from ânetParseUrlâ at net.c:280:4: >/usr/include/bits/string_fortified.h:106:10: warning: â__builtin_strncpyâ specified bound 1024 equals destination size []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation-Wstringop-truncation]8;;] > 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >In function âstrncpyâ, > inlined from ânetParseUrlâ at net.c:314:7: >/usr/include/bits/string_fortified.h:106:10: warning: â__builtin_strncpyâ output may be truncated copying 128 bytes from a string of length 1023 []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation-Wstringop-truncation]8;;] > 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >In function âstrncpyâ, > inlined from ânetParseUrlâ at net.c:315:7: >/usr/include/bits/string_fortified.h:106:10: warning: â__builtin_strncpyâ specified bound 128 equals destination size []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation-Wstringop-truncation]8;;] > 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >In function âstrncpyâ, > inlined from ânetParseUrlâ at net.c:308:7: >/usr/include/bits/string_fortified.h:106:10: warning: â__builtin_strncpyâ output may be truncated copying 128 bytes from a string of length 1023 []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation-Wstringop-truncation]8;;] > 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >In function âstrncpyâ, > inlined from ânetParseUrlâ at net.c:335:4: >/usr/include/bits/string_fortified.h:106:10: warning: â__builtin_strncpyâ specified bound 16 equals destination size []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation-Wstringop-truncation]8;;] > 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >In function âstrncpyâ, > inlined from ânetParseUrlâ at net.c:339:1: >/usr/include/bits/string_fortified.h:106:10: warning: â__builtin_strncpyâ output may be truncated copying 128 bytes from a string of length 1023 []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation-Wstringop-truncation]8;;] > 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o nt4.o -c nt4.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o obscure.o -c obscure.c >nt4.c: In function ânewNt4â: >nt4.c:36:6: warning: variable âunpackedâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 36 | DNA *unpacked; > | ^~~~~~~~ >At top level: >nt4.c:13:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 13 | static char const rcsid[] = "$Id: nt4.c,v 1.5 2005/04/10 14:41:24 markd Exp $"; > | ^~~~~ >obscure.c: In function âincCounterFileâ: >obscure.c:24:5: warning: ignoring return value of âfreadâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 24 | fread(&val, sizeof(val), 1, f); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >obscure.c: In function âcpFileâ: >obscure.c:235:9: warning: ignoring return value of âwriteâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 235 | write(d, buf, readSize); > | ^~~~~~~~~~~~~~~~~~~~~~~ >At top level: >obscure.c:14:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 14 | static char const rcsid[] = "$Id: obscure.c,v 1.44 2007/03/02 00:45:01 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o oldGff.o -c oldGff.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o oligoTm.o -c oligoTm.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o options.o -c options.c >oldGff.c:16:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 16 | static char const rcsid[] = "$Id: oldGff.c,v 1.6 2005/04/10 14:41:24 markd Exp $"; > | ^~~~~ >options.c:15:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 15 | static char const rcsid[] = "$Id: options.c,v 1.24 2005/12/12 04:03:40 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o osunix.o -c osunix.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pairHmm.o -c pairHmm.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o phyloTree.o -c phyloTree.c >osunix.c:15:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 15 | static char const rcsid[] = "$Id: osunix.c,v 1.31 2007/01/30 19:43:46 kate Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pipeline.o -c pipeline.c >pairHmm.c:11:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 11 | static char const rcsid[] = "$Id: pairHmm.c,v 1.5 2005/04/11 06:43:58 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o portimpl.o -c portimpl.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pscmGfx.o -c pscmGfx.c >portimpl.c:14:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 14 | static char const rcsid[] = "$Id: portimpl.c,v 1.14 2006/06/23 21:44:04 hiram Exp $"; > | ^~~~~ >pscmGfx.c:18:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 18 | static char const rcsid[] = "$Id: pscmGfx.c,v 1.20 2007/04/15 00:43:41 galt Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o psGfx.o -c psGfx.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o psl.o -c psl.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslGenoShow.o -c pslGenoShow.c >psGfx.c:11:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 11 | static char const rcsid[] = "$Id: psGfx.c,v 1.30 2007/04/15 00:29:47 galt Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslShow.o -c pslShow.c >pslGenoShow.c: In function âpslShowAlignmentStranded2â: >pslGenoShow.c:31:36: warning: variable âtcfmEndâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 31 | int qcfmStart, qcfmEnd, tcfmStart, tcfmEnd; > | ^~~~~~~ >pslGenoShow.c:31:16: warning: variable âqcfmEndâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 31 | int qcfmStart, qcfmEnd, tcfmStart, tcfmEnd; > | ^~~~~~~ >pslGenoShow.c:30:36: warning: variable âtbafEndâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 30 | int qbafStart, qbafEnd, tbafStart, tbafEnd; > | ^~~~~~~ >pslGenoShow.c:30:16: warning: variable âqbafEndâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 30 | int qbafStart, qbafEnd, tbafStart, tbafEnd; > | ^~~~~~~ >psl.c:22:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 22 | static char const rcsid[] = "$Id: psl.c,v 1.76 2007/03/04 20:24:19 kent Exp $"; > | ^~~~~ >pslShow.c: In function âpslShowAlignmentStrandedâ: >pslShow.c:26:36: warning: variable âtcfmEndâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 26 | int qcfmStart, qcfmEnd, tcfmStart, tcfmEnd; > | ^~~~~~~ >pslShow.c:26:16: warning: variable âqcfmEndâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 26 | int qcfmStart, qcfmEnd, tcfmStart, tcfmEnd; > | ^~~~~~~ >pslShow.c:25:36: warning: variable âtbafEndâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 25 | int qbafStart, qbafEnd, tbafStart, tbafEnd; > | ^~~~~~~ >pslShow.c:25:16: warning: variable âqbafEndâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 25 | int qbafStart, qbafEnd, tbafStart, tbafEnd; > | ^~~~~~~ >At top level: >pslShow.c:12:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 12 | static char const rcsid[] = "$Id: pslShow.c,v 1.5 2005/10/05 19:07:43 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslTbl.o -c pslTbl.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslTransMap.o -c pslTransMap.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o psPoly.o -c psPoly.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pthreadWrap.o -c pthreadWrap.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o qa.o -c qa.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o quickHeap.o -c quickHeap.c >pthreadWrap.c:10:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 10 | static char const rcsid[] = "$Id: pthreadWrap.c,v 1.3 2003/05/06 07:33:44 kate Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o quotedP.o -c quotedP.c >quickHeap.c:30:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 30 | static char const rcsid[] = "$Id: quickHeap.c,v 1.1 2005/10/21 05:36:08 galt Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ra.o -c ra.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rangeTree.o -c rangeTree.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rbTree.o -c rbTree.c >ra.c:15:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 15 | static char const rcsid[] = "$Id: ra.c,v 1.11 2007/03/28 17:13:55 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o repMask.o -c repMask.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rle.o -c rle.c >rbTree.c:12:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 12 | static char const rcsid[] = "$Id: rbTree.c,v 1.10 2007/02/24 15:59:29 kent Exp $"; > | ^~~~~ >rle.c:9:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 9 | static char const rcsid[] = "$Id: rle.c,v 1.6 2005/05/10 00:50:16 markd Exp $"; > | ^~~~~ >repMask.c:10:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 10 | static char const rcsid[] = "$Id: repMask.c,v 1.6 2005/04/10 14:41:25 markd Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rnautil.o -c rnautil.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rudp.o -c rudp.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o scoreWindow.o -c scoreWindow.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o seqOut.o -c seqOut.c >rudp.c:58:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 58 | static char const rcsid[] = "$Id: rudp.c,v 1.14 2005/12/12 02:24:47 kent Exp $"; > | ^~~~~ >seqOut.c:15:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 15 | static char const rcsid[] = "$Id: seqOut.c,v 1.27 2007/03/26 18:11:48 angie Exp $"; > | ^~~~~ >scoreWindow.c:4:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 4 | static char const rcsid[] = "$Id: scoreWindow.c,v 1.4 2004/07/16 22:42:55 baertsch Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o seqStats.o -c seqStats.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o servBrcMcw.o -c servBrcMcw.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o servcis.o -c servcis.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o servCrunx.o -c servCrunx.c >servBrcMcw.c:12:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 12 | static char const rcsid[] = "$Id: servBrcMcw.c,v 1.3 2006/06/19 22:02:56 hiram Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o servcl.o -c servcl.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o servmsII.o -c servmsII.c >servcis.c:12:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 12 | static char const rcsid[] = "$Id: servcis.c,v 1.10 2006/06/19 22:02:57 hiram Exp $"; > | ^~~~~ >servCrunx.c:11:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 11 | static char const rcsid[] = "$Id: servCrunx.c,v 1.7 2006/06/19 22:02:56 hiram Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o servpws.o -c servpws.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o shaRes.o -c shaRes.c >servmsII.c:11:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 11 | static char const rcsid[] = "$Id: servmsII.c,v 1.6 2006/06/19 22:02:57 hiram Exp $"; > | ^~~~~ >servcl.c:11:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 11 | static char const rcsid[] = "$Id: servcl.c,v 1.7 2006/06/19 22:02:57 hiram Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o slog.o -c slog.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o snof.o -c snof.c >servpws.c:11:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 11 | static char const rcsid[] = "$Id: servpws.c,v 1.6 2006/06/19 22:02:57 hiram Exp $"; > | ^~~~~ >shaRes.c:9:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 9 | static char const rcsid[] = "$Id: shaRes.c,v 1.4 2003/05/06 07:33:44 kate Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o snofmake.o -c snofmake.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o snofsig.o -c snofsig.c >slog.c:9:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 9 | static char const rcsid[] = "$Id: slog.c,v 1.4 2003/05/06 07:33:44 kate Exp $"; > | ^~~~~ >snof.c: In function âsnofNameAtIxâ: >snof.c:282:1: warning: ignoring return value of âfreadâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 282 | fread(snof->mid, snof->itemSize, 1, snof->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >At top level: >snof.c:13:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 13 | static char const rcsid[] = "$Id: snof.c,v 1.4 2003/05/06 07:33:44 kate Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o spacedColumn.o -c spacedColumn.c >snofmake.c:11:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 11 | static char const rcsid[] = "$Id: snofmake.c,v 1.5 2003/05/06 07:33:44 kate Exp $"; > | ^~~~~ >snofsig.c:9:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 9 | static char const rcsid[] = "$Id: snofsig.c,v 1.4 2003/05/06 07:33:44 kate Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o spacedSeed.o -c spacedSeed.c >spacedColumn.c:10:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 10 | static char const rcsid[] = "$Id: spacedColumn.c,v 1.1 2007/03/23 06:29:51 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o spaceSaver.o -c spaceSaver.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o sqlNum.o -c sqlNum.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o sqlList.o -c sqlList.c >spacedSeed.c:6:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 6 | static char const rcsid[] = "$Id: spacedSeed.c,v 1.1 2005/01/10 00:02:37 kent Exp $"; > | ^~~~~ >spaceSaver.c:11:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 11 | static char const rcsid[] = "$Id: spaceSaver.c,v 1.10 2004/09/02 20:08:44 kent Exp $"; > | ^~~~~ >sqlNum.c:10:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 10 | static char const rcsid[] = "$Id: sqlNum.c,v 1.16 2005/12/09 22:39:36 hiram Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o subText.o -c subText.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o synQueue.o -c synQueue.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o tabRow.o -c tabRow.c >sqlList.c:14:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 14 | static char const rcsid[] = "$Id: sqlList.c,v 1.19 2006/07/17 19:35:30 markd Exp $"; > | ^~~~~ >subText.c:9:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 9 | static char const rcsid[] = "$Id: subText.c,v 1.11 2005/04/10 14:41:26 markd Exp $"; > | ^~~~~ >synQueue.c:9:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 9 | static char const rcsid[] = "$Id: synQueue.c,v 1.6 2006/03/11 23:07:02 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o textOut.o -c textOut.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o tokenizer.o -c tokenizer.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o trix.o -c trix.c >textOut.c:9:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 9 | static char const rcsid[] = "$Id: textOut.c,v 1.3 2006/08/04 06:00:20 markd Exp $"; > | ^~~~~ >tokenizer.c:11:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 11 | static char const rcsid[] = "$Id: tokenizer.c,v 1.3 2004/07/14 05:47:14 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o twoBit.o -c twoBit.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o verbose.o -c verbose.c >twoBit.c: In function âreadBlockCoordsâ: >twoBit.c:388:5: warning: ignoring return value of âfreadâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 388 | fread(nStarts, sizeof(nStarts[0]), blkCount, f); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >twoBit.c:389:5: warning: ignoring return value of âfreadâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 389 | fread(nSizes, sizeof(nSizes[0]), blkCount, f); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >twoBit.c: In function âtwoBitOutNBedsâ: >twoBit.c:952:5: warning: ignoring return value of âfreadâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 952 | fread(nStarts, sizeof(nStarts[0]), nBlockCount, tbf->f); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >twoBit.c:953:5: warning: ignoring return value of âfreadâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 953 | fread(nSizes, sizeof(nSizes[0]), nBlockCount, tbf->f); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >twoBit.c: In function âtwoBitSeqSizeNoNsâ: >twoBit.c:994:5: warning: ignoring return value of âfreadâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 994 | fread(nStarts, sizeof(nStarts[0]), nBlockCount, tbf->f); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >twoBit.c:995:5: warning: ignoring return value of âfreadâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 995 | fread(nSizes, sizeof(nSizes[0]), nBlockCount, tbf->f); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >At top level: >twoBit.c:12:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 12 | static char const rcsid[] = "$Id: twoBit.c,v 1.22 2006/07/31 22:18:22 angie Exp $"; > | ^~~~~ >verbose.c:7:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 7 | static char const rcsid[] = "$Id: verbose.c,v 1.5 2005/10/17 15:46:41 markd Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o vGfx.o -c vGfx.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o vGif.o -c vGif.c >vGfx.c:8:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 8 | static char const rcsid[] = "$Id: vGfx.c,v 1.6 2006/06/23 23:45:02 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o wildcmp.o -c wildcmp.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o wormdna.o -c wormdna.c >vGif.c:10:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 10 | static char const rcsid[] = "$Id: vGif.c,v 1.4 2003/05/06 07:33:44 kate Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xa.o -c xa.c >wildcmp.c:8:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 8 | static char const rcsid[] = "$Id: wildcmp.c,v 1.5 2003/05/06 07:33:44 kate Exp $"; > | ^~~~~ >wormdna.c: In function âwormGeneForOrfâ: >wormdna.c:606:13: warning: variable âwordCountâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 606 | int wordCount; > | ^~~~~~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xAli.o -c xAli.c >wormdna.c: In function âwormCdnaInfoâ: >wormdna.c:272:1: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 272 | fgets(commentBuf, sizeof(commentBuf), cdnaFa); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >wormdna.c: In function âwormGeneRangeâ: >wormdna.c:1045:5: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 1045 | fgets(lineBuf, sizeof(lineBuf), c2cFile); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >wormdna.c: In function âfindAltSpliceRangeâ: >wormdna.c:974:9: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 974 | fgets(lineBuf, sizeof(lineBuf), f); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >At top level: >wormdna.c:20:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 20 | static char const rcsid[] = "$Id: wormdna.c,v 1.10 2005/04/10 14:41:26 markd Exp $"; > | ^~~~~ >xa.c:9:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 9 | static char const rcsid[] = "$Id: xa.c,v 1.5 2003/05/06 07:33:44 kate Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xap.o -c xap.c >xAli.c:12:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 12 | static char const rcsid[] = "$Id: xAli.c,v 1.6 2005/04/10 14:41:26 markd Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xenshow.o -c xenshow.c >xap.c:13:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 13 | static char const rcsid[] = "$Id: xap.c,v 1.11 2005/12/19 05:18:26 kent Exp $"; > | ^~~~~ >xenshow.c:9:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 9 | static char const rcsid[] = "$Id: xenshow.c,v 1.5 2003/05/06 07:33:44 kate Exp $"; > | ^~~~~ >In file included from /usr/include/string.h:495, > from ../inc/common.h:33, > from wormdna.c:8: >In function âstrncpyâ, > inlined from âwormIsGeneNameâ at wormdna.c:525:1: >/usr/include/bits/string_fortified.h:106:10: warning: â__builtin_strncpyâ specified bound 128 equals destination size []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation-Wstringop-truncation]8;;] > 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xmlEscape.o -c xmlEscape.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xp.o -c xp.c >mkdir amd64 >In function âstrncpyâ, > inlined from âwormParseChromRangeâ at wormdna.c:882:1: >/usr/include/bits/string_fortified.h:106:10: warning: â__builtin_strncpyâ specified bound 128 equals destination size []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation-Wstringop-truncation]8;;] > 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >xp.c:16:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 16 | static char const rcsid[] = "$Id: xp.c,v 1.15 2005/12/19 17:51:14 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-ar rcus amd64/jkweb.a aliType.o apacheLog.o asParse.o axt.o axtAffine.o base64.o bits.o binRange.o blastOut.o blastParse.o boxClump.o boxLump.o browserGfx.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o codebias.o colHash.o common.o correlate.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaseq.o dnautil.o dnaMotif.o dtdParse.o dystring.o emblParse.o errabort.o errCatch.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o fuzzyShow.o gapCalc.o gdf.o gemfont.o gfNet.o gff.o gfxPoly.o gifcomp.o gifdecomp.o gifLabel.o gifread.o gifwrite.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o internet.o intExp.o jointalign.o jpegSize.o keys.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o mgTinyFont.o mgSmallFont.o mgMediumFont.o mgLargeFont.o mgHugeFont.o memalloc.o memgfx.o mgCircle.o mgPolygon.o mime.o net.o nib.o nibTwo.o nt4.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o phyloTree.o pipeline.o portimpl.o pscmGfx.o psGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o psPoly.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rangeTree.o rbTree.o repMask.o rle.o rnautil.o rudp.o scoreWindow.o seqOut.o seqStats.o servBrcMcw.o servcis.o servCrunx.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spacedColumn.o spacedSeed.o spaceSaver.o sqlNum.o sqlList.o subText.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o verbose.o vGfx.o vGif.o wildcmp.o wormdna.o xa.o xAli.o xap.o xenshow.o xmlEscape.o xp.o >make[1]: Leaving directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/lib' >make -C jkOwnLib >make[1]: Entering directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/jkOwnLib' >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bandExt.o -c bandExt.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o crudeali.o -c crudeali.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ffAliHelp.o -c ffAliHelp.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ffSeedExtend.o -c ffSeedExtend.c >ffSeedExtend.c: In function âclumpToExactRangeâ: >ffSeedExtend.c:218:57: warning: variable âlastTeâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 218 | BIOPOL *lastQs = NULL, *lastQe = NULL, *lastTs = NULL, *lastTe = NULL; > | ^~~~~~ >crudeali.c:17:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 17 | static char const rcsid[] = "$Id: crudeali.c,v 1.5 2006/05/09 01:05:55 markd Exp $"; > | ^~~~~ >ffAliHelp.c:9:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 9 | static char const rcsid[] = "$Id: ffAliHelp.c,v 1.10 2005/11/20 19:24:57 kent Exp $"; > | ^~~~~ >bandExt.c:21:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 21 | static char const rcsid[] = "$Id: bandExt.c,v 1.13 2006/03/14 19:02:31 angie Exp $"; > | ^~~~~ >At top level: >ffSeedExtend.c:15:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 15 | static char const rcsid[] = "$Id: ffSeedExtend.c,v 1.36 2006/06/22 16:24:43 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fuzzyFind.o -c fuzzyFind.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o genoFind.o -c genoFind.c >fuzzyFind.c: In function ârwFindTilesBetweenâ: >fuzzyFind.c:1170:5: warning: variable âtileIxâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 1170 | int tileIx; > | ^~~~~~ >At top level: >fuzzyFind.c:43:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 43 | static char const rcsid[] = "$Id: fuzzyFind.c,v 1.17 2006/05/09 01:05:55 markd Exp $"; > | ^~~~~ >genoFind.c:20:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 20 | static char const rcsid[] = "$Id: genoFind.c,v 1.23 2007/02/04 05:09:02 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfBlatLib.o -c gfBlatLib.c >gfBlatLib.c: In function âclumpToHspRangeâ: >gfBlatLib.c:732:57: warning: variable âlastTeâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 732 | BIOPOL *lastQs = NULL, *lastQe = NULL, *lastTs = NULL, *lastTe = NULL; > | ^~~~~~ >gfBlatLib.c: In function âstartSeqQueryâ: >gfBlatLib.c:114:1: warning: ignoring return value of âwriteâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 114 | write(conn, buf, strlen(buf)); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >gfBlatLib.c:115:1: warning: ignoring return value of âreadâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 115 | read(conn, buf, 1); > | ^~~~~~~~~~~~~~~~~~ >gfBlatLib.c:118:1: warning: ignoring return value of âwriteâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 118 | write(conn, seq->dna, seq->size); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >At top level: >gfBlatLib.c:21:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 21 | static char const rcsid[] = "$Id: gfBlatLib.c,v 1.25 2007/04/20 22:44:11 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfClientLib.o -c gfClientLib.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfInternal.o -c gfInternal.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfOut.o -c gfOut.c >gfInternal.c:13:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 13 | static char const rcsid[] = "$Id: gfInternal.c,v 1.3 2006/06/22 16:24:44 kent Exp $"; > | ^~~~~ >gfOut.c:17:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 17 | static char const rcsid[] = "$Id: gfOut.c,v 1.16 2006/06/22 16:24:44 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfPcrLib.o -c gfPcrLib.c >gfPcrLib.c: In function âpcrLocalStrandâ: >gfPcrLib.c:299:5: warning: variable âsizeLeftâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 299 | int sizeLeft; > | ^~~~~~~~ >gfPcrLib.c: In function âgfPcrGetRangesâ: >gfPcrLib.c:390:1: warning: ignoring return value of âwriteâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 390 | write(conn, buf, strlen(buf)); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >At top level: >gfPcrLib.c:16:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 16 | static char const rcsid[] = "$Id: gfPcrLib.c,v 1.8 2006/03/15 18:36:16 angie Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfWebLib.o -c gfWebLib.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ooc.o -c ooc.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o patSpace.o -c patSpace.c >ooc.c:8:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 8 | static char const rcsid[] = "$Id: ooc.c,v 1.2 2003/09/09 21:44:02 kent Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o supStitch.o -c supStitch.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o trans3.o -c trans3.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xenbig.o -c xenbig.c >patSpace.c:10:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 10 | static char const rcsid[] = "$Id: patSpace.c,v 1.3 2006/03/15 18:36:16 angie Exp $"; > | ^~~~~ >trans3.c:8:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 8 | static char const rcsid[] = "$Id: trans3.c,v 1.5 2007/04/20 22:43:37 kent Exp $"; > | ^~~~~ >xenbig.c: In function âxStitchâ: >xenbig.c:886:13: warning: variable âpartCountâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 886 | int partCount; > | ^~~~~~~~~ >supStitch.c:18:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 18 | static char const rcsid[] = "$Id: supStitch.c,v 1.38 2007/04/20 22:43:37 kent Exp $"; > | ^~~~~ >At top level: >xenbig.c:16:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 16 | static char const rcsid[] = "$Id: xenbig.c,v 1.3 2006/03/15 18:36:16 angie Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xensmall.o -c xensmall.c >xensmall.c: In function âxenAlignSmallâ: >xensmall.c:224:5: warning: variable âmatchOffâ set but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-but-set-variable-Wunused-but-set-variable]8;;] > 224 | int matchOff, qSlipOff, tSlipOff; > | ^~~~~~~~ >At top level: >xensmall.c:11:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 11 | static char const rcsid[] = "$Id: xensmall.c,v 1.11 2006/03/15 18:36:16 angie Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-ar rcus ../lib/amd64/jkOwnLib.a bandExt.o crudeali.o ffAliHelp.o ffSeedExtend.o fuzzyFind.o genoFind.o gfBlatLib.o gfClientLib.o gfInternal.o gfOut.o gfPcrLib.o gfWebLib.o ooc.o patSpace.o supStitch.o trans3.o xenbig.o xensmall.o >make[1]: Leaving directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/jkOwnLib' >make -C blat >make[1]: Entering directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/blat' >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o blat.o -c blat.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o /var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/bin/amd64/blat blat.o ../lib/amd64/jkOwnLib.a ../lib/amd64/jkweb.a -lm >x86_64-pc-linux-gnu-strip /var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/bin/amd64/blat >make[1]: Leaving directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/blat' >make -C gfClient >make[1]: Entering directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/gfClient' >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfClient.o -c gfClient.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o /var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/bin/amd64/gfClient gfClient.o ../lib/amd64/jkOwnLib.a ../lib/amd64/jkweb.a -lm >x86_64-pc-linux-gnu-strip /var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/bin/amd64/gfClient >make[1]: Leaving directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/gfClient' >make -C gfServer >make[1]: Entering directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/gfServer' >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfServer.o -c gfServer.c >gfServer.c: In function âstopServerâ: >gfServer.c:741:1: warning: ignoring return value of âwriteâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 741 | write(sd, buf, strlen(buf)); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ >gfServer.c: In function âstatusServerâ: >gfServer.c:756:1: warning: ignoring return value of âwriteâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 756 | write(sd, buf, strlen(buf)); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ >gfServer.c: In function âqueryServerâ: >gfServer.c:787:1: warning: ignoring return value of âwriteâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 787 | write(sd, buf, strlen(buf)); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ >gfServer.c:789:1: warning: ignoring return value of âreadâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 789 | read(sd, buf, 1); > | ^~~~~~~~~~~~~~~~ >gfServer.c:792:1: warning: ignoring return value of âwriteâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 792 | write(sd, seq->dna, seq->size); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >gfServer.c: In function âpcrServerâ: >gfServer.c:840:1: warning: ignoring return value of âwriteâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 840 | write(sd, buf, strlen(buf)); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ >gfServer.c: In function âgetFileListâ: >gfServer.c:874:1: warning: ignoring return value of âwriteâ declared with attribute âwarn_unused_resultâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] > 874 | write(sd, buf, strlen(buf)); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o /var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/bin/amd64/gfServer gfServer.o ../lib/amd64/jkOwnLib.a ../lib/amd64/jkweb.a -lm >x86_64-pc-linux-gnu-strip /var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/bin/amd64/gfServer >make[1]: Leaving directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/gfServer' >make -C hg/pslPretty >make[1]: Entering directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/hg/pslPretty' >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslPretty.o -c pslPretty.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o /var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/bin/amd64/pslPretty pslPretty.o ../../lib/amd64/jkweb.a -lm >make[1]: Leaving directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/hg/pslPretty' >make -C hg/pslReps >make[1]: Entering directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/hg/pslReps' >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslReps.o -c pslReps.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o /var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/bin/amd64/pslReps pslReps.o ../../lib/amd64/jkweb.a -lm >make[1]: Leaving directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/hg/pslReps' >make -C hg/pslSort >make[1]: Entering directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/hg/pslSort' >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslSort.o -c pslSort.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o /var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/bin/amd64/pslSort pslSort.o ../../lib/amd64/jkweb.a -lm >make[1]: Leaving directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/hg/pslSort' >make -C utils/nibFrag >make[1]: Entering directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/utils/nibFrag' >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o nibFrag.o -c nibFrag.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o /var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/bin/amd64/nibFrag nibFrag.o ../../lib/amd64/jkweb.a >make[1]: Leaving directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/utils/nibFrag' >make -C utils/faToNib >make[1]: Entering directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/utils/faToNib' >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faToNib.o -c faToNib.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o /var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/bin/amd64/faToNib faToNib.o ../../lib/amd64/jkweb.a -lm >make[1]: Leaving directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/utils/faToNib' >make -C utils/faToTwoBit >make[1]: Entering directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/utils/faToTwoBit' >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faToTwoBit.o -c faToTwoBit.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o /var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/bin/amd64/faToTwoBit faToTwoBit.o ../../lib/amd64/jkweb.a -lm >x86_64-pc-linux-gnu-strip /var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/bin/amd64/faToTwoBit >make[1]: Leaving directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/utils/faToTwoBit' >make -C utils/twoBitToFa >make[1]: Entering directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/utils/twoBitToFa' >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o twoBitToFa.o -c twoBitToFa.c >twoBitToFa.c:10:19: warning: ârcsidâ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-const-variable=-Wunused-const-variable=]8;;] > 10 | static char const rcsid[] = "$Id: twoBitToFa.c,v 1.11 2006/10/16 21:21:12 galt Exp $"; > | ^~~~~ >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o /var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/bin/amd64/twoBitToFa twoBitToFa.o ../../lib/amd64/jkweb.a -lm >#x86_64-pc-linux-gnu-strip /var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/bin/amd64/twoBitToFa >make[1]: Leaving directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/utils/twoBitToFa' >make -C utils/twoBitInfo >make[1]: Entering directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/utils/twoBitInfo' >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o twoBitInfo.o -c twoBitInfo.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o /var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/bin/amd64/twoBitInfo twoBitInfo.o ../../lib/amd64/jkweb.a -lm >x86_64-pc-linux-gnu-strip /var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/bin/amd64/twoBitInfo >make[1]: Leaving directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/utils/twoBitInfo' >make -C webBlat >make[1]: Entering directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/webBlat' >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o webBlat.o -c webBlat.c >x86_64-pc-linux-gnu-gcc -o webBlat webBlat.o ../lib/amd64/jkOwnLib.a ../lib/amd64/jkweb.a -lm >x86_64-pc-linux-gnu-strip webBlat >make[1]: Leaving directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/webBlat' >>>> Source compiled. >>>> Test phase [not enabled]: sci-biology/blat-34-r2 > >>>> Install sci-biology/blat-34-r2 into /var/tmp/portage/sci-biology/blat-34-r2/image/ >>>> Completed installing sci-biology/blat-34-r2 into /var/tmp/portage/sci-biology/blat-34-r2/image/ > > * Final size of build directory: 15252 KiB (14.8 MiB) > * Final size of installed tree: 2380 KiB ( 2.3 MiB) > > > * QA Notice: Files built without respecting LDFLAGS have been detected > * Please include the following list of files in your report: > * /usr/bin/blat > * /usr/bin/faToTwoBit > * /usr/bin/gfClient > * /usr/bin/gfServer > * /usr/bin/twoBitInfo > > > > * QA Notice: Pre-stripped files found: > * /usr/bin/gfServer > * /usr/bin/twoBitInfo > * /usr/bin/blat > * /usr/bin/gfClient > * /usr/bin/faToTwoBit >strip: x86_64-pc-linux-gnu-strip --strip-unneeded -N __gentoo_check_ldflags__ -R .comment -R .GCC.command.line -R .note.gnu.gold-version > /usr/bin/faToNib > /usr/bin/nibFrag > /usr/bin/pslPretty > /usr/bin/pslReps > /usr/bin/pslSort > /usr/bin/twoBitToFa >>>> Done. > > > >emerge --info: >Portage 2.3.103 (python 3.7.8-final-0, default/linux/amd64/17.1, gcc-10.1.0, glibc-2.31-r5, 5.4.0-1017-aws x86_64) >================================================================= >System uname: Linux-5.4.0-1017-aws-x86_64-AMD_EPYC_7571-with-gentoo-2.7 >KiB Mem: 16011348 total, 8687860 free >KiB Swap: 0 total, 0 free >sh bash 5.0_p17 >ld GNU ld (Gentoo 2.34 p4) 2.34.0 >app-shells/bash: 5.0_p17::gentoo >dev-lang/perl: 5.30.3-r1::gentoo >dev-lang/python: 2.7.18::gentoo, 3.7.8-r1::gentoo, 3.8.3-r1::gentoo >sys-apps/baselayout: 2.7::gentoo >sys-apps/openrc: 0.42.1::gentoo >sys-apps/sandbox: 2.20::gentoo >sys-devel/autoconf: 2.69-r5::gentoo >sys-devel/automake: 1.16.2::gentoo >sys-devel/binutils: 2.34-r1::gentoo >sys-devel/gcc: 10.1.0-r2::gentoo >sys-devel/gcc-config: 2.3.1::gentoo >sys-devel/libtool: 2.4.6-r6::gentoo >sys-devel/make: 4.3::gentoo >sys-kernel/linux-headers: 5.7::gentoo (virtual/os-headers) >sys-libs/glibc: 2.31-r5::gentoo >Repositories: > >gentoo > location: /usr/portage > sync-type: rsync > sync-uri: rsync://rsync.gentoo.org/gentoo-portage > priority: -1000 > sync-rsync-verify-max-age: 24 > sync-rsync-verify-jobs: 1 > sync-rsync-extra-opts: > sync-rsync-verify-metamanifest: yes > >ACCEPT_KEYWORDS="amd64 ~amd64" >ACCEPT_LICENSE="*" >CBUILD="x86_64-pc-linux-gnu" >CFLAGS="-O2 -pipe -march=native -frecord-gcc-switches" >CHOST="x86_64-pc-linux-gnu" >CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" >CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" >CXXFLAGS="-O2 -pipe -march=native -frecord-gcc-switches" >DISTDIR="/usr/portage/distfiles" >EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -k -b" >ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" >FCFLAGS="-O2 -pipe -march=native -frecord-gcc-switches" >FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg collision-protect config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" >FFLAGS="-O2 -pipe -march=native -frecord-gcc-switches" >GENTOO_MIRRORS="http://distfiles.gentoo.org" >LANG="C.UTF8" >LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" >MAKEOPTS="-j4 V=1" >PKGDIR="/root/.packages" >PORTAGE_CONFIGROOT="/" >PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" >PORTAGE_TMPDIR="/var/tmp" >USE="acl amd64 berkdb bzip2 cli crypt dri fortran gdbm iconv ipv6 libtirpc multilib native-symlinks ncurses nls nptl openmp pam pcre readline seccomp split-usr ssl tcpd unicode xattr zlib" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_7" PYTHON_TARGETS="python2_7 python3_7" RUBY_TARGETS="ruby25" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" >Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS >
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