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Gentoo's Bugzilla – Attachment 642306 Details for
Bug 725842
sys-cluster/mpich-3.3 USE=fortran - configure: error: The Fortran compiler x86_64-pc-linux-gnu-gfortran will not compile files that call the same routine with arguments of different types.
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build.log
build.log (text/plain), 52.81 KB, created by
Agostino Sarubbo
on 2020-05-28 07:30:38 UTC
(
hide
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Description:
build.log
Filename:
MIME Type:
Creator:
Agostino Sarubbo
Created:
2020-05-28 07:30:38 UTC
Size:
52.81 KB
patch
obsolete
> * Package: sys-cluster/mpich-3.3 > * Repository: gentoo > * Maintainer: balaji@mcs.anl.gov cluster@gentoo.org > * USE: abi_x86_64 amd64 cxx elibc_glibc fortran kernel_linux userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox test userpriv usersandbox > * Using following Fortran compiler: > * F77: x86_64-pc-linux-gnu-gfortran > * FC: x86_64-pc-linux-gnu-gfortran >>>> Unpacking source... >>>> Unpacking mpich-3.3.tar.gz to /var/tmp/portage/sys-cluster/mpich-3.3/work >>>> Source unpacked in /var/tmp/portage/sys-cluster/mpich-3.3/work >>>> Preparing source in /var/tmp/portage/sys-cluster/mpich-3.3/work/mpich-3.3 ... > * Applying mpich-3.3-add-external-libdir-parameter.patch ... > [ ok ] > * Running eautoreconf in '/var/tmp/portage/sys-cluster/mpich-3.3/work/mpich-3.3/src/pm/hydra/mpl' ... > * Running libtoolize --install --copy --force --automake ... > [ ok ] > * Running aclocal -I confdb ... > [ ok ] > * Running autoconf --force ... > [ ok ] > * Running autoheader ... > [ ok ] > * Running automake --add-missing --copy --foreign --force-missing ... > [ ok ] > * Running elibtoolize in: mpich-3.3/src/pm/hydra/mpl/ > * Running elibtoolize in: mpich-3.3/src/pm/hydra/mpl/confdb/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... >/var/tmp/portage/sys-cluster/mpich-3.3/work/mpich-3.3 > * Running eautoreconf in '/var/tmp/portage/sys-cluster/mpich-3.3/work/mpich-3.3/src/pm/hydra' ... > * Running libtoolize --install --copy --force --automake ... > [ ok ] > * Running aclocal -I confdb -I tools/topo/hwloc/hwloc/config ... > [ ok ] > * Running autoconf --force ... > [ ok ] > * Running autoheader ... > [ ok ] > * Running automake --add-missing --copy --foreign --force-missing ... > [ ok ] > * Running elibtoolize in: mpich-3.3/src/pm/hydra/ > * Running elibtoolize in: mpich-3.3/src/pm/hydra/confdb/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... > * Running elibtoolize in: mpich-3.3/src/pm/hydra/mpl/ > * We've already been run in this tree; you should > * avoid this if possible (perhaps by filing a bug) > * Running elibtoolize in: mpich-3.3/src/pm/hydra/mpl/confdb/ > * We've already been run in this tree; you should > * avoid this if possible (perhaps by filing a bug) > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Running elibtoolize in: mpich-3.3/src/pm/hydra/tools/topo/hwloc/hwloc/ > * Applying ppc64le/2.4.4 patch ... > * Running elibtoolize in: mpich-3.3/src/pm/hydra/tools/topo/hwloc/hwloc/config/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... >/var/tmp/portage/sys-cluster/mpich-3.3/work/mpich-3.3 > * Running eautoreconf in '/var/tmp/portage/sys-cluster/mpich-3.3/work/mpich-3.3/test/mpi/dtpools' ... > * Running libtoolize --install --copy --force --automake ... > [ ok ] > * Running aclocal ... > [ ok ] > * Running autoconf --force ... > [ ok ] > * Running autoheader ... > [ ok ] > * Running automake --add-missing --copy --foreign --force-missing ... > [ ok ] > * Running eautoreconf in '/var/tmp/portage/sys-cluster/mpich-3.3/work/mpich-3.3/test/mpi' ... > * Running aclocal -I confdb ... > [ ok ] > * Running autoconf --force ... > [ ok ] > * Running autoheader ... > [ ok ] > * Running automake --add-missing --copy --foreign --force-missing ... > [ ok ] > * Running eautoreconf in '/var/tmp/portage/sys-cluster/mpich-3.3/work/mpich-3.3' ... > * Running libtoolize --install --copy --force --automake ... > [ ok ] > * Running aclocal -I confdb -I src/hwloc/config ... > [ ok ] > * Running autoconf --force ... > [ ok ] > * Running autoheader ... > [ ok ] > * Running automake --add-missing --copy --foreign --force-missing ... > [ ok ] > * Running elibtoolize in: mpich-3.3/ > * Running elibtoolize in: mpich-3.3/confdb/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... > * Running elibtoolize in: mpich-3.3/maint/ > * Running elibtoolize in: mpich-3.3/src/hwloc/ > * Applying ppc64le/2.4.4 patch ... > * Running elibtoolize in: mpich-3.3/src/hwloc/config/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... > * Running elibtoolize in: mpich-3.3/src/izem/ > * Applying ppc64le/2.4.4 patch ... > * Running elibtoolize in: mpich-3.3/src/izem/m4/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... > * Running elibtoolize in: mpich-3.3/src/mpi/romio/ > * Applying ppc64le/2.4.4 patch ... > * Running elibtoolize in: mpich-3.3/src/mpi/romio/confdb/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... > * Running elibtoolize in: mpich-3.3/src/mpi/romio/mpl/ > * Applying ppc64le/2.4.4 patch ... > * Running elibtoolize in: mpich-3.3/src/mpi/romio/mpl/confdb/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... > * Running elibtoolize in: mpich-3.3/src/mpid/ch4/netmod/ofi/libfabric/ > * Applying ppc64le/2.4.4 patch ... > * Running elibtoolize in: mpich-3.3/src/mpid/ch4/netmod/ofi/libfabric/config/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... > * Running elibtoolize in: mpich-3.3/src/mpid/ch4/netmod/ucx/ucx/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... > * Applying ppc64le/2.4.4 patch ... > * Running elibtoolize in: mpich-3.3/src/mpl/ > * Applying ppc64le/2.4.4 patch ... > * Running elibtoolize in: mpich-3.3/src/mpl/confdb/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... > * Running elibtoolize in: mpich-3.3/src/openpa/ > * Applying ppc64le/2.4.4 patch ... > * Running elibtoolize in: mpich-3.3/src/openpa/confdb/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... > * Running elibtoolize in: mpich-3.3/src/pm/hydra/ > * We've already been run in this tree; you should > * avoid this if possible (perhaps by filing a bug) > * Running elibtoolize in: mpich-3.3/src/pm/hydra/confdb/ > * We've already been run in this tree; you should > * avoid this if possible (perhaps by filing a bug) > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Running elibtoolize in: mpich-3.3/src/pm/hydra/mpl/ > * We've already been run in this tree; you should > * avoid this if possible (perhaps by filing a bug) > * Running elibtoolize in: mpich-3.3/src/pm/hydra/mpl/confdb/ > * We've already been run in this tree; you should > * avoid this if possible (perhaps by filing a bug) > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Running elibtoolize in: mpich-3.3/src/pm/hydra/tools/topo/hwloc/hwloc/ > * We've already been run in this tree; you should > * avoid this if possible (perhaps by filing a bug) > * Running elibtoolize in: mpich-3.3/src/pm/hydra/tools/topo/hwloc/hwloc/config/ > * We've already been run in this tree; you should > * avoid this if possible (perhaps by filing a bug) > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Running elibtoolize in: mpich-3.3/src/pm/hydra2/ > * Applying ppc64le/2.4.4 patch ... > * Running elibtoolize in: mpich-3.3/src/pm/hydra2/confdb/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... > * Running elibtoolize in: mpich-3.3/src/pm/hydra2/libhydra/topo/hwloc/hwloc/ > * Applying ppc64le/2.4.4 patch ... > * Running elibtoolize in: mpich-3.3/src/pm/hydra2/libhydra/topo/hwloc/hwloc/config/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... > * Running elibtoolize in: mpich-3.3/src/pm/hydra2/mpl/ > * Applying ppc64le/2.4.4 patch ... > * Running elibtoolize in: mpich-3.3/src/pm/hydra2/mpl/confdb/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... > * Running elibtoolize in: mpich-3.3/src/util/logging/rlog/ > * Running elibtoolize in: mpich-3.3/test/mpi/ > * Running elibtoolize in: mpich-3.3/test/mpi/dtpools/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sys-cluster/mpich-3.3/work/mpich-3.3 ... > * abi_x86_64.amd64: running multilib-minimal_abi_src_configure > * econf: updating mpich-3.3/confdb/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating mpich-3.3/confdb/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating mpich-3.3/src/mpl/confdb/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating mpich-3.3/src/mpl/confdb/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating mpich-3.3/src/openpa/confdb/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating mpich-3.3/src/openpa/confdb/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating mpich-3.3/src/mpid/ch4/netmod/ucx/ucx/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating mpich-3.3/src/mpid/ch4/netmod/ucx/ucx/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating mpich-3.3/src/mpid/ch4/netmod/ofi/libfabric/config/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating mpich-3.3/src/mpid/ch4/netmod/ofi/libfabric/config/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating mpich-3.3/src/izem/m4/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating mpich-3.3/src/izem/m4/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating mpich-3.3/src/hwloc/config/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating mpich-3.3/src/hwloc/config/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating mpich-3.3/src/mpi/romio/confdb/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating mpich-3.3/src/mpi/romio/confdb/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating mpich-3.3/src/mpi/romio/mpl/confdb/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating mpich-3.3/src/mpi/romio/mpl/confdb/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating mpich-3.3/src/pm/hydra/confdb/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating mpich-3.3/src/pm/hydra/confdb/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating mpich-3.3/src/pm/hydra/tools/topo/hwloc/hwloc/config/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating mpich-3.3/src/pm/hydra/tools/topo/hwloc/hwloc/config/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating mpich-3.3/src/pm/hydra/mpl/confdb/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating mpich-3.3/src/pm/hydra/mpl/confdb/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating mpich-3.3/src/pm/hydra2/confdb/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating mpich-3.3/src/pm/hydra2/confdb/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating mpich-3.3/src/pm/hydra2/mpl/confdb/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating mpich-3.3/src/pm/hydra2/mpl/confdb/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating mpich-3.3/src/pm/hydra2/libhydra/topo/hwloc/hwloc/config/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating mpich-3.3/src/pm/hydra2/libhydra/topo/hwloc/hwloc/config/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating mpich-3.3/test/mpi/confdb/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating mpich-3.3/test/mpi/confdb/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating mpich-3.3/test/mpi/dtpools/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating mpich-3.3/test/mpi/dtpools/config.guess with /usr/share/gnuconfig/config.guess >/var/tmp/portage/sys-cluster/mpich-3.3/work/mpich-3.3/configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/mpich-3.3 --htmldir=/usr/share/doc/mpich-3.3/html --libdir=/usr/lib64 --enable-shared --with-hwloc-prefix=/usr --with-hwloc-libdir=lib64 --with-common-libdir=lib64 --with-prefix-libdir=lib64 --with-izem-libdir=lib64 --with-fiprovider-libdir=lib64 --with-thread-package=none --enable-threads=single --sysconfdir=/etc/mpich --with-pm=hydra --disable-fast --enable-versioning --disable-romio --enable-cxx --enable-fortran=all >Configuring MPICH version 3.3 with '--prefix=/usr' '--build=x86_64-pc-linux-gnu' '--host=x86_64-pc-linux-gnu' '--mandir=/usr/share/man' '--infodir=/usr/share/info' '--datadir=/usr/share' '--sysconfdir=/etc' '--localstatedir=/var/lib' '--disable-dependency-tracking' '--disable-silent-rules' '--docdir=/usr/share/doc/mpich-3.3' '--htmldir=/usr/share/doc/mpich-3.3/html' '--libdir=/usr/lib64' '--enable-shared' '--with-hwloc-prefix=/usr' '--with-hwloc-libdir=lib64' '--with-common-libdir=lib64' '--with-prefix-libdir=lib64' '--with-izem-libdir=lib64' '--with-fiprovider-libdir=lib64' '--with-thread-package=none' '--enable-threads=single' '--sysconfdir=/etc/mpich' '--with-pm=hydra' '--disable-fast' '--enable-versioning' '--disable-romio' '--enable-cxx' '--enable-fortran=all' 'build_alias=x86_64-pc-linux-gnu' 'host_alias=x86_64-pc-linux-gnu' 'MPICHLIB_CFLAGS=-O2 -pipe -march=native -frecord-gcc-switches' 'MPICHLIB_CPPFLAGS=' 'MPICHLIB_CXXFLAGS=-O2 -pipe -march=native -frecord-gcc-switches' 'MPICHLIB_FFLAGS=-O2 -pipe -march=native -frecord-gcc-switches' 'MPICHLIB_FCFLAGS=-O2 -pipe -march=native -frecord-gcc-switches' 'CC=x86_64-pc-linux-gnu-gcc' 'CPP=x86_64-pc-linux-gnu-gcc -E' 'CXX=x86_64-pc-linux-gnu-g++' 'FC=x86_64-pc-linux-gnu-gfortran' 'F77=x86_64-pc-linux-gnu-gfortran' 'GCOV=x86_64-pc-linux-gnu-gcov' >Running on system: Linux localhost 5.4.0-1009-aws #9-Ubuntu SMP Sun Apr 12 19:46:01 UTC 2020 x86_64 AMD EPYC 7571 AuthenticAMD GNU/Linux >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking target system type... x86_64-pc-linux-gnu >checking for x86_64-pc-linux-gnu-icc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking minix/config.h usability... no >checking minix/config.h presence... no >checking for minix/config.h... no >checking whether it is safe to define __EXTENSIONS__... yes >checking for a BSD-compatible install... /usr/lib/portage/python3.7/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make supports the include directive... yes (GNU style) >checking whether make supports nested variables... yes >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking whether to enable maintainer-specific portions of Makefiles... yes >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking the archiver (x86_64-pc-linux-gnu-ar) interface... ar >checking how to print strings... printf >checking for a sed that does not truncate output... /bin/sed >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-ld >checking if the linker (x86_64-pc-linux-gnu-ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... x86_64-pc-linux-gnu-nm >checking the name lister (x86_64-pc-linux-gnu-nm) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for x86_64-pc-linux-gnu-ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... (cached) x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse x86_64-pc-linux-gnu-nm output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... no >checking for a working dd... /bin/dd >checking how to truncate binary pipes... /bin/dd bs=4096 count=1 >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (x86_64-pc-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... yes >checking whether make supports nested variables... (cached) yes >checking whether we are using the GNU C++ compiler... yes >checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes >checking dependency style of x86_64-pc-linux-gnu-g++... none >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E >checking for ld used by x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-ld -m elf_x86_64 >checking if the linker (x86_64-pc-linux-gnu-ld -m elf_x86_64) is GNU ld... yes >checking whether the x86_64-pc-linux-gnu-g++ linker (x86_64-pc-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes >checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-g++ linker (x86_64-pc-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking for x86_64-pc-linux-gnu-ifort... x86_64-pc-linux-gnu-gfortran >checking whether we are using the GNU Fortran compiler... yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... yes >checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC >checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes >checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gfortran linker (x86_64-pc-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking for x86_64-pc-linux-gnu-ifort... x86_64-pc-linux-gnu-gfortran >checking whether we are using the GNU Fortran 77 compiler... yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... yes >checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC >checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes >checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gfortran linker (x86_64-pc-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >Parsing Arguments for OFI Netmod >checking hcoll/api/hcoll_api.h usability... no >checking hcoll/api/hcoll_api.h presence... no >checking for hcoll/api/hcoll_api.h... no >checking for hcoll_init in -lhcoll... no >configure: RUNNING PREREQ FOR ch3:nemesis >configure: ===== configuring src/mpl ===== >configure: running /bin/sh /var/tmp/portage/sys-cluster/mpich-3.3/work/mpich-3.3/src/mpl/configure --disable-option-checking '--prefix=/usr' --disable-versioning --enable-embedded '--build=x86_64-pc-linux-gnu' '--host=x86_64-pc-linux-gnu' '--mandir=/usr/share/man' '--infodir=/usr/share/info' '--datadir=/usr/share' '--sysconfdir=/etc' '--localstatedir=/var/lib' '--disable-dependency-tracking' '--disable-silent-rules' '--docdir=/usr/share/doc/mpich-3.3' '--htmldir=/usr/share/doc/mpich-3.3/html' '--libdir=/usr/lib64' '--enable-shared' '--with-hwloc-prefix=/usr' '--with-hwloc-libdir=lib64' '--with-common-libdir=lib64' '--with-prefix-libdir=lib64' '--with-izem-libdir=lib64' '--with-fiprovider-libdir=lib64' '--with-thread-package=none' '--enable-threads=single' '--sysconfdir=/etc/mpich' '--with-pm=hydra' '--disable-fast' '--enable-versioning' '--disable-romio' '--enable-cxx' '--enable-fortran=all' 'build_alias=x86_64-pc-linux-gnu' 'host_alias=x86_64-pc-linux-gnu' 'MPICHLIB_CFLAGS=-O2 -pipe -march=native -frecord-gcc-switches' 'MPICHLIB_CPPFLAGS=' 'MPICHLIB_CXXFLAGS=-O2 -pipe -march=native -frecord-gcc-switches' 'MPICHLIB_FFLAGS=-O2 -pipe -march=native -frecord-gcc-switches' 'MPICHLIB_FCFLAGS=-O2 -pipe -march=native -frecord-gcc-switches' 'CC=x86_64-pc-linux-gnu-gcc' 'CPP=x86_64-pc-linux-gnu-gcc -E' 'CXX=x86_64-pc-linux-gnu-g++' 'FC=x86_64-pc-linux-gnu-gfortran' 'F77=x86_64-pc-linux-gnu-gfortran' 'GCOV=x86_64-pc-linux-gnu-gcov' --cache-file=/dev/null --srcdir=/var/tmp/portage/sys-cluster/mpich-3.3/work/mpich-3.3/src/mpl >checking for a BSD-compatible install... /usr/lib/portage/python3.7/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make supports nested variables... yes >checking for style of include used by make... GNU >checking for x86_64-pc-linux-gnu-icc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking minix/config.h usability... no >checking minix/config.h presence... no >checking for minix/config.h... no >checking whether it is safe to define __EXTENSIONS__... yes >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking the archiver (x86_64-pc-linux-gnu-ar) interface... ar >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking how to print strings... printf >checking for a sed that does not truncate output... /bin/sed >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-ld -m elf_x86_64 >checking if the linker (x86_64-pc-linux-gnu-ld -m elf_x86_64) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... x86_64-pc-linux-gnu-nm >checking the name lister (x86_64-pc-linux-gnu-nm) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for x86_64-pc-linux-gnu-ld -m elf_x86_64 option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... (cached) x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse x86_64-pc-linux-gnu-nm output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... no >checking for a working dd... /bin/dd >checking how to truncate binary pipes... /bin/dd bs=4096 count=1 >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (x86_64-pc-linux-gnu-ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... yes >checking whether make supports nested variables... (cached) yes >checking for an ANSI C-conforming const... yes >checking for C/C++ restrict keyword... __restrict >checking for inline... inline >checking for variable argument list macro functionality... yes >checking if C compiler supports __builtin_expect... yes >checking for gcov... x86_64-pc-linux-gnu-gcov >checking whether the compiler supports __typeof(variable)... yes >checking stdio.h usability... yes >checking stdio.h presence... yes >checking for stdio.h... yes >checking for stdlib.h... (cached) yes >checking for string.h... (cached) yes >checking stdarg.h usability... yes >checking stdarg.h presence... yes >checking for stdarg.h... yes >checking ctype.h usability... yes >checking ctype.h presence... yes >checking for ctype.h... yes >checking for sys/types.h... (cached) yes >checking sys/uio.h usability... yes >checking sys/uio.h presence... yes >checking for sys/uio.h... yes >checking execinfo.h usability... yes >checking execinfo.h presence... yes >checking for execinfo.h... yes >checking for unistd.h... (cached) yes >checking errno.h usability... yes >checking errno.h presence... yes >checking for errno.h... yes >checking windows.h usability... no >checking windows.h presence... no >checking for windows.h... no >checking sys/mman.h usability... yes >checking sys/mman.h presence... yes >checking for sys/mman.h... yes >checking for inttypes.h... (cached) yes >checking for stdint.h... (cached) yes >checking for stdbool.h that conforms to C99... yes >checking for _Bool... yes >checking valgrind.h usability... no >checking valgrind.h presence... no >checking for valgrind.h... no >checking memcheck.h usability... no >checking memcheck.h presence... no >checking for memcheck.h... no >checking valgrind/valgrind.h usability... no >checking valgrind/valgrind.h presence... no >checking for valgrind/valgrind.h... no >checking valgrind/memcheck.h usability... no >checking valgrind/memcheck.h presence... no >checking for valgrind/memcheck.h... no >checking helgrind.h usability... no >checking helgrind.h presence... no >checking for helgrind.h... no >checking valgrind/helgrind.h usability... no >checking valgrind/helgrind.h presence... no >checking for valgrind/helgrind.h... no >checking drd.h usability... no >checking drd.h presence... no >checking for drd.h... no >checking valgrind/drd.h usability... no >checking valgrind/drd.h presence... no >checking for valgrind/drd.h... no >checking whether the valgrind headers are broken or too old... yes >checking for clock_gettime... yes >checking for clock_getres... yes >checking for gethrtime... no >checking for mach_absolute_time... no >checking for gettimeofday... yes >checking for library containing clock_gettime... none required >checking for library containing clock_getres... none required >checking whether struct timespec is defined in time.h... yes >checking for CLOCK_REALTIME defined in time.h... yes >configure: Timer type selected is CLOCK_GETTIME >checking sched.h usability... yes >checking sched.h presence... yes >checking for sched.h... yes >checking for unistd.h... (cached) yes >checking sys/select.h usability... yes >checking sys/select.h presence... yes >checking for sys/select.h... yes >checking for sched_yield... yes >checking for yield... no >checking for usleep... yes >checking for sleep... yes >checking for select... yes >checking whether usleep needs a declaration... no >checking for thread local storage specifier... none >checking pthread.h usability... yes >checking pthread.h presence... yes >checking for pthread.h... yes >checking for pthread_mutex_init in -lpthread... yes >checking for pthread_mutex_init... yes >checking for pthread_mutexattr_setpshared... yes >configure: POSIX will be used for interprocess mutex package. >checking for mkstemp... yes >checking whether mkstemp needs a declaration... no >checking for fdopen... yes >checking whether fdopen needs a declaration... yes >checking for getpid... yes >checking for mmap... yes >checking for munmap... yes >configure: Using a memory-mapped file for shared memory >checking for strdup... yes >checking whether strdup needs a declaration... no >checking for snprintf... yes >checking whether snprintf needs a declaration... no >checking for strncmp... yes >checking whether strncmp needs a declaration... no >checking for putenv... yes >checking whether putenv needs a declaration... no >checking for strerror... yes >checking whether strerror needs a declaration... no >checking for usleep... (cached) yes >checking whether usleep needs a declaration... (cached) no >checking for posix_memalign... yes >checking for aligned_alloc... yes >checking whether aligned_alloc needs a declaration... no >checking for backtrace_symbols... yes >checking whether backtrace_create_state is declared... no >checking whether backtrace_print is declared... no >checking for library containing gethostbyname... none required >checking for library containing socket... none required >checking ifaddrs.h usability... yes >checking ifaddrs.h presence... yes >checking for ifaddrs.h... yes >checking arpa/inet.h usability... yes >checking arpa/inet.h presence... yes >checking for arpa/inet.h... yes >checking for inet_ntop... yes >checking for getifaddrs... yes >checking whether __attribute__ allowed... yes >checking whether __attribute__((format)) allowed... yes >checking for __attribute__((aligned))... yes >checking for __attribute__((used))... yes >checking for __attribute__((fallthrough))... yes >checking that generated files are newer than configure... done >configure: creating ./config.status >config.status: creating Makefile >config.status: creating localdefs >config.status: creating include/mpl_timer.h >config.status: creating include/config.h >config.status: executing depfiles commands >config.status: executing libtool commands >config.status: executing include/mplconfig.h commands >config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines >configure: ===== done with src/mpl configure ===== >configure: sourcing src/mpl/localdefs >configure: ===== configuring src/openpa ===== >configure: running /bin/sh /var/tmp/portage/sys-cluster/mpich-3.3/work/mpich-3.3/src/openpa/configure --disable-option-checking '--prefix=/usr' --disable-versioning --enable-embedded --with-atomic-primitives=auto_allow_emulation '--build=x86_64-pc-linux-gnu' '--host=x86_64-pc-linux-gnu' '--mandir=/usr/share/man' '--infodir=/usr/share/info' '--datadir=/usr/share' '--sysconfdir=/etc' '--localstatedir=/var/lib' '--disable-dependency-tracking' '--disable-silent-rules' '--docdir=/usr/share/doc/mpich-3.3' '--htmldir=/usr/share/doc/mpich-3.3/html' '--libdir=/usr/lib64' '--enable-shared' '--with-hwloc-prefix=/usr' '--with-hwloc-libdir=lib64' '--with-common-libdir=lib64' '--with-prefix-libdir=lib64' '--with-izem-libdir=lib64' '--with-fiprovider-libdir=lib64' '--with-thread-package=none' '--enable-threads=single' '--sysconfdir=/etc/mpich' '--with-pm=hydra' '--disable-fast' '--enable-versioning' '--disable-romio' '--enable-cxx' '--enable-fortran=all' 'build_alias=x86_64-pc-linux-gnu' 'host_alias=x86_64-pc-linux-gnu' 'MPICHLIB_CFLAGS=-O2 -pipe -march=native -frecord-gcc-switches' 'MPICHLIB_CPPFLAGS=' 'MPICHLIB_CXXFLAGS=-O2 -pipe -march=native -frecord-gcc-switches' 'MPICHLIB_FFLAGS=-O2 -pipe -march=native -frecord-gcc-switches' 'MPICHLIB_FCFLAGS=-O2 -pipe -march=native -frecord-gcc-switches' 'CC=x86_64-pc-linux-gnu-gcc' 'CPP=x86_64-pc-linux-gnu-gcc -E' 'CXX=x86_64-pc-linux-gnu-g++' 'FC=x86_64-pc-linux-gnu-gfortran' 'F77=x86_64-pc-linux-gnu-gfortran' 'GCOV=x86_64-pc-linux-gnu-gcov' --cache-file=/dev/null --srcdir=/var/tmp/portage/sys-cluster/mpich-3.3/work/mpich-3.3/src/openpa >checking for a BSD-compatible install... /usr/lib/portage/python3.7/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make supports nested variables... yes >checking for style of include used by make... GNU >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking the archiver (x86_64-pc-linux-gnu-ar) interface... ar >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking how to print strings... printf >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-ld -m elf_x86_64 >checking if the linker (x86_64-pc-linux-gnu-ld -m elf_x86_64) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... x86_64-pc-linux-gnu-nm >checking the name lister (x86_64-pc-linux-gnu-nm) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for x86_64-pc-linux-gnu-ld -m elf_x86_64 option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... (cached) x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse x86_64-pc-linux-gnu-nm output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... no >checking for a working dd... /bin/dd >checking how to truncate binary pipes... /bin/dd bs=4096 count=1 >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (x86_64-pc-linux-gnu-ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... yes >checking whether make supports nested variables... (cached) yes >checking for x86_64-pc-linux-gnu-gcc... (cached) x86_64-pc-linux-gnu-gcc >checking whether we are using the GNU C compiler... (cached) yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... (cached) yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... (cached) yes >checking dependency style of x86_64-pc-linux-gnu-gcc... (cached) none >checking whether to enable assertions... yes >checking pthread.h usability... yes >checking pthread.h presence... yes >checking for pthread.h... yes >checking atomic.h usability... no >checking atomic.h presence... no >checking for atomic.h... no >checking intrin.h usability... no >checking intrin.h presence... no >checking for intrin.h... no >checking for inttypes.h... (cached) yes >checking for stdint.h... (cached) yes >checking stddef.h usability... yes >checking stddef.h presence... yes >checking for stddef.h... yes >checking for C/C++ restrict keyword... __restrict >checking for inline... inline >checking for an ANSI C-conforming const... yes >checking for pthread_create in -lpthread... yes >checking for pthread_yield... yes >checking if 100 threads can be run at once... yes >checking size of void *... 8 >checking size of int... 4 >checking whether __attribute__ allowed... yes >checking whether __attribute__((format)) allowed... yes >checking if compiler rejects bogus asm statements... yes >checking for support for gcc x86/x86_64 primitives... yes >checking for support for gcc x86 primitives for pre-Pentium 4... yes >checking for support for gcc ia64 primitives... no >checking for support for gcc PowerPC atomics... no >checking for support for gcc ARM atomics... no >checking for support for gcc SiCortex atomics... no >checking for support for gcc atomic intrinsics... yes >checking for support for Windows NT atomic intrinsics... no >checking for support for Sun atomic operations library... no >checking whether to enable strict fairness checks... no >checking that generated files are newer than configure... done >configure: creating ./config.status >config.status: creating Makefile >config.status: creating src/Makefile >config.status: creating test/Makefile >config.status: creating openpa.pc >config.status: creating src/config.h >config.status: executing depfiles commands >config.status: executing libtool commands >config.status: executing src/opa_config.h commands >config.status: creating src/opa_config.h - prefix OPA for src/config.h defines >configure: ===== done with src/openpa configure ===== >checking for type of weak symbol alias support... pragma weak >checking whether __attribute__ ((weak)) allowed... yes >checking whether __attribute__ ((weak_import)) allowed... yes >checking whether __attribute__((weak,alias(...))) allowed... yes >checking for multiple weak symbol support... yes >checking if x86_64-pc-linux-gnu-gcc supports -fvisibility=hidden... yes >checking whether to enable symbol visibility... yes (via -fvisibility=hidden) >checking hwloc.h usability... yes >checking hwloc.h presence... yes >checking for hwloc.h... yes >checking for hwloc_topology_set_pid in -lhwloc... yes >checking if non-embedded hwloc works... yes >sourcing /var/tmp/portage/sys-cluster/mpich-3.3/work/mpich-3.3/src/pm/hydra/mpichprereq >checking whether the compiler defines __func__... yes >checking whether the compiler defines __FUNC__... no >checking whether the compiler sets __FUNCTION__... yes >checking whether C compiler accepts option -O0... yes >checking whether C compiler option -O0 works with an invalid prototype program... yes >checking whether routines compiled with -O0 can be linked with ones compiled without -O0... yes >checking for shared library (esp. rpath) characteristics of CC... done (results in src/env/cc_shlib.conf) >checking whether Fortran 77 compiler accepts option -O0... yes >checking whether routines compiled with -O0 can be linked with ones compiled without -O0... yes >checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... -v >checking for Fortran 77 libraries of x86_64-pc-linux-gnu-gfortran... -L/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/10.1.0/../../.. -lhwloc -lgfortran -lm -lquadmath >checking whether x86_64-pc-linux-gnu-gfortran accepts the FLIBS found by autoconf... yes >checking whether x86_64-pc-linux-gnu-gcc links with FLIBS found by autoconf... yes >checking whether Fortran 77 and C objects are compatible... yes >checking for linker for Fortran main program... Use Fortran to link programs >checking for Fortran 77 name mangling... lower uscore >checking for libraries to link Fortran main with C stdio routines... none >checking whether Fortran init will work with C... yes >checking for extension for Fortran 90 programs... f90 >checking whether the Fortran 90 compiler (x86_64-pc-linux-gnu-gfortran -O2 -pipe -march=native -frecord-gcc-switches ) works... yes >checking whether the Fortran 90 compiler (x86_64-pc-linux-gnu-gfortran -O2 -pipe -march=native -frecord-gcc-switches ) is a cross-compiler... no >checking whether Fortran 90 compiler works with Fortran 77 compiler... yes >checking for shared library (esp. rpath) characteristics of F77... done (results in src/env/f77_shlib.conf) >checking whether Fortran 77 accepts ! for comments... yes >checking for include directory flag for Fortran... -I >checking for Fortran 77 flag for library directories... -L >checking whether Fortran 77 compiler processes .F files with C preprocessor... yes >checking whether x86_64-pc-linux-gnu-gfortran allows mismatched arguments... no >configure: error: The Fortran compiler x86_64-pc-linux-gnu-gfortran will not compile files that call >the same routine with arguments of different types. > >!!! Please attach the following file when seeking support: >!!! /var/tmp/portage/sys-cluster/mpich-3.3/work/mpich-3.3-abi_x86_64.amd64/config.log > * ERROR: sys-cluster/mpich-3.3::gentoo failed (configure phase): > * econf failed > * > * Call stack: > * ebuild.sh, line 125: Called src_configure > * environment, line 3028: Called multilib-minimal_src_configure > * environment, line 2241: Called multilib_foreach_abi 'multilib-minimal_abi_src_configure' > * environment, line 2474: Called multibuild_foreach_variant '_multilib_multibuild_wrapper' 'multilib-minimal_abi_src_configure' > * environment, line 2171: Called _multibuild_run '_multilib_multibuild_wrapper' 'multilib-minimal_abi_src_configure' > * environment, line 2169: Called _multilib_multibuild_wrapper 'multilib-minimal_abi_src_configure' > * environment, line 587: Called multilib-minimal_abi_src_configure > * environment, line 2235: Called multilib_src_configure > * environment, line 2714: Called econf '--enable-shared' '--with-hwloc-prefix=/usr' '--with-hwloc-libdir=lib64' '--with-common-libdir=lib64' '--with-prefix-libdir=lib64' '--with-izem-libdir=lib64' '--with-fiprovider-libdir=lib64' '--with-thread-package=none' '--enable-threads=single' '--sysconfdir=/etc/mpich' '--with-pm=hydra' '--disable-fast' '--enable-versioning' '--disable-romio' '--enable-cxx' '--enable-fortran=all' > * phase-helpers.sh, line 681: Called __helpers_die 'econf failed' > * isolated-functions.sh, line 112: Called die > * The specific snippet of code: > * die "$@" > * > * If you need support, post the output of `emerge --info '=sys-cluster/mpich-3.3::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sys-cluster/mpich-3.3::gentoo'`. > * The complete build log is located at '/var/log/emerge-log/build/sys-cluster/mpich-3.3:20200527-235451.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sys-cluster/mpich-3.3/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sys-cluster/mpich-3.3/temp/environment'. > * Working directory: '/var/tmp/portage/sys-cluster/mpich-3.3/work/mpich-3.3-abi_x86_64.amd64' > * S: '/var/tmp/portage/sys-cluster/mpich-3.3/work/mpich-3.3' > > > >emerge --info: >Portage 2.3.100 (python 3.7.7-final-0, default/linux/amd64/17.1, gcc-10.1.0, glibc-2.31-r3, 5.4.0-1009-aws x86_64) >================================================================= >System uname: Linux-5.4.0-1009-aws-x86_64-AMD_EPYC_7571-with-gentoo-2.7 >KiB Mem: 16011344 total, 2621228 free >KiB Swap: 0 total, 0 free >Timestamp of repository gentoo: Thu, 28 May 2020 06:35:31 +0000 >sh bash 5.0_p17 >ld GNU ld (Gentoo 2.34 p4) 2.34.0 >app-shells/bash: 5.0_p17::gentoo >dev-lang/perl: 5.30.2-r2::gentoo >dev-lang/python: 2.7.18::gentoo, 3.7.7-r2::gentoo, 3.8.3::gentoo >sys-apps/baselayout: 2.7::gentoo >sys-apps/openrc: 0.42.1::gentoo >sys-apps/sandbox: 2.18::gentoo >sys-devel/autoconf: 2.69-r5::gentoo >sys-devel/automake: 1.16.2::gentoo >sys-devel/binutils: 2.34-r1::gentoo >sys-devel/gcc: 10.1.0::gentoo >sys-devel/gcc-config: 2.3::gentoo >sys-devel/libtool: 2.4.6-r6::gentoo >sys-devel/make: 4.3::gentoo >sys-kernel/linux-headers: 5.6::gentoo (virtual/os-headers) >sys-libs/glibc: 2.31-r3::gentoo >Repositories: > >gentoo > location: /usr/portage > sync-type: rsync > sync-uri: rsync://rsync.gentoo.org/gentoo-portage > priority: -1000 > sync-rsync-verify-max-age: 24 > sync-rsync-verify-metamanifest: yes > sync-rsync-extra-opts: > sync-rsync-verify-jobs: 1 > >ACCEPT_KEYWORDS="amd64 ~amd64" >ACCEPT_LICENSE="*" >CBUILD="x86_64-pc-linux-gnu" >CC="x86_64-pc-linux-gnu-gcc" >CFLAGS="-O2 -pipe -march=native -frecord-gcc-switches" >CHOST="x86_64-pc-linux-gnu" >CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" >CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" >CXX="x86_64-pc-linux-gnu-g++" >CXXFLAGS="-O2 -pipe -march=native -frecord-gcc-switches" >DISTDIR="/usr/portage/distfiles" >EMERGE_DEFAULT_OPTS="--with-bdeps=y --binpkg-respect-use=y -1 -b -k" >ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" >FCFLAGS="-O2 -pipe -march=native -frecord-gcc-switches" >FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg collision-protect config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" >FFLAGS="-O2 -pipe -march=native -frecord-gcc-switches" >GENTOO_MIRRORS="http://distfiles.gentoo.org" >LANG="C.UTF-8" >LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" >MAKEOPTS="-j4" >PKGDIR="/root/.packages" >PORTAGE_CONFIGROOT="/" >PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" >PORTAGE_TMPDIR="/var/tmp" >USE="acl amd64 berkdb bzip2 cli crypt dri fortran gdbm iconv ipv6 libtirpc multilib ncurses nls nptl openmp pam pcre readline seccomp split-usr ssl tcpd unicode xattr zlib" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_7" PYTHON_TARGETS="python2_7 python3_7" RUBY_TARGETS="ruby24 ruby25" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" >Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS >
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bug 725842
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644972