* Package: sci-chemistry/mm-align-20120321 * Repository: gentoo * Maintainer: sci-chemistry@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox * Using following Fortran compiler: * F77: x86_64-pc-linux-gnu-gfortran * FC: x86_64-pc-linux-gnu-gfortran >>> Unpacking source... >>> Unpacking MM-align-20120321.tar.xz to /var/tmp/portage/sci-chemistry/mm-align-20120321/work >>> Source unpacked in /var/tmp/portage/sci-chemistry/mm-align-20120321/work >>> Preparing source in /var/tmp/portage/sci-chemistry/mm-align-20120321/work ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-chemistry/mm-align-20120321/work ... >>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/mm-align-20120321/work/mm-align-20120321_build" cmake -C /var/tmp/portage/sci-chemistry/mm-align-20120321/work/mm-align-20120321_build/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-chemistry/mm-align-20120321/work/mm-align-20120321_build/gentoo_toolchain.cmake /var/tmp/portage/sci-chemistry/mm-align-20120321/work loading initial cache file /var/tmp/portage/sci-chemistry/mm-align-20120321/work/mm-align-20120321_build/gentoo_common_config.cmake -- The Fortran compiler identification is GNU 10.1.0 -- Check for working Fortran compiler: /usr/bin/x86_64-pc-linux-gnu-gfortran -- Check for working Fortran compiler: /usr/bin/x86_64-pc-linux-gnu-gfortran - works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/bin/x86_64-pc-linux-gnu-gfortran supports Fortran 90 -- Checking whether /usr/bin/x86_64-pc-linux-gnu-gfortran supports Fortran 90 - yes -- <<< Gentoo configuration >>> Build type Gentoo Install path /usr Compiler flags: C C++ Linker flags: Executable -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 Module -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 Shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -- Configuring done -- Generating done -- Build files have been written to: /var/tmp/portage/sci-chemistry/mm-align-20120321/work/mm-align-20120321_build >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-chemistry/mm-align-20120321/work ... >>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/mm-align-20120321/work/mm-align-20120321_build" make -j1 VERBOSE=1 /usr/bin/cmake -S/var/tmp/portage/sci-chemistry/mm-align-20120321/work -B/var/tmp/portage/sci-chemistry/mm-align-20120321/work/mm-align-20120321_build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /var/tmp/portage/sci-chemistry/mm-align-20120321/work/mm-align-20120321_build/CMakeFiles /var/tmp/portage/sci-chemistry/mm-align-20120321/work/mm-align-20120321_build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/var/tmp/portage/sci-chemistry/mm-align-20120321/work/mm-align-20120321_build' make -f CMakeFiles/MMalign.dir/build.make CMakeFiles/MMalign.dir/depend make[2]: Entering directory '/var/tmp/portage/sci-chemistry/mm-align-20120321/work/mm-align-20120321_build' cd /var/tmp/portage/sci-chemistry/mm-align-20120321/work/mm-align-20120321_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /var/tmp/portage/sci-chemistry/mm-align-20120321/work /var/tmp/portage/sci-chemistry/mm-align-20120321/work /var/tmp/portage/sci-chemistry/mm-align-20120321/work/mm-align-20120321_build /var/tmp/portage/sci-chemistry/mm-align-20120321/work/mm-align-20120321_build /var/tmp/portage/sci-chemistry/mm-align-20120321/work/mm-align-20120321_build/CMakeFiles/MMalign.dir/DependInfo.cmake Dependee "/var/tmp/portage/sci-chemistry/mm-align-20120321/work/mm-align-20120321_build/CMakeFiles/MMalign.dir/DependInfo.cmake" is newer than depender "/var/tmp/portage/sci-chemistry/mm-align-20120321/work/mm-align-20120321_build/CMakeFiles/MMalign.dir/depend.internal". Dependee "/var/tmp/portage/sci-chemistry/mm-align-20120321/work/mm-align-20120321_build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/var/tmp/portage/sci-chemistry/mm-align-20120321/work/mm-align-20120321_build/CMakeFiles/MMalign.dir/depend.internal". Scanning dependencies of target MMalign make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/mm-align-20120321/work/mm-align-20120321_build' make -f CMakeFiles/MMalign.dir/build.make CMakeFiles/MMalign.dir/build make[2]: Entering directory '/var/tmp/portage/sci-chemistry/mm-align-20120321/work/mm-align-20120321_build' [ 50%] Building Fortran object CMakeFiles/MMalign.dir/MM-align.f.o /usr/bin/x86_64-pc-linux-gnu-gfortran -O2 -pipe -march=native -O2 -pipe -march=native -o CMakeFiles/MMalign.dir/MM-align.f.o -c /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4327:72: 4327 | do 1 j = 1, 3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4332:72: 4332 | 1 r(i,j) = zero | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4342:72: 4342 | do 2 i = 1, 3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4344:72: 4344 | 2 yc(i) = yc(i) + (w(m) * y(i,m)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4350:72: 4350 | 3 yc(i) = yc(i) / wc | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4353:72: 4353 | do 4 i = 1, 3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 4 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4358:72: 4358 | do 4 j = 1, 3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 4 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4361:72: 4361 | 4 r(i,j) = r(i,j) + (d * (x(j,m) - xc(j))) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4372:72: 4372 | do 5 i = 1, j | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 5 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4378:72: 4378 | &) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4386:72: 4386 | 6 e(i) = spur | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 6 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4409:72: 4409 | if (mode) 10, 50, 10 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4412:72: 4412 | 8 if (mode) 30, 50, 30 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4434:72: 4434 | 14 d = d + (ss(k) * ss(k)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 14 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4436:72: 4436 | do 15 i = 1, 3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 15 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4437:72: 4437 | 15 a(i,l) = a(i,l) * d | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 15 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4447:72: 4447 | 17 p = p + (a(i,m1) ** 2) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 17 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4451:72: 4451 | 18 a(i,m1) = a(i,m1) * p | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 18 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4478:72: 4478 | 31 d = d + (b(i,l) ** 2) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 31 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4480:72: 4480 | do 32 i = 1, 3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 32 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4481:72: 4481 | 32 b(i,l) = b(i,l) * d | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 32 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4486:72: 4486 | 33 p = p + (b(i,2) ** 2) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 33 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4490:72: 4490 | 34 b(i,2) = b(i,2) * p | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 34 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4509:72: 4509 | do 39 j = 1, 3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 39 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4513:72: 4513 | &)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 39 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4518:72: 4518 | & * xc(3)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 41 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4521:72: 4521 | 51 e(i) = dsqrt(e(i)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 51 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4551:72: 4551 | 1 a(i)=i | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4595:72: 4595 | 1 a(i)=i | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4619:72: 4619 | 30 if(a(j).gt.ia) d=d+1 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4130:16: 4129 | do i=0,inseq | 2 4130 | inter1(i)=0 | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4133:16: 4132 | do j=0,inseq | 2 4133 | inter2(j)=0 | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4246:16: 4245 | do i=0,ilen_first1 | 2 4246 | inter3(i)=0 | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:4249:16: 4248 | do j=0,ilen_first2 | 2 4249 | inter4(j)=0 | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:3947:28: 3946 | do jj=ismall,0,-1 | 2 3947 | ibegin2=id(icombo2,jj) | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:3948:28: 3946 | do jj=ismall,0,-1 | 2 3947 | ibegin2=id(icombo2,jj) 3948 | ibegin1=ia(icombo1,jj) | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:619:19: 619 | do icombo2=1,fnpm | 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:1148:5: 1148 | 7776 continue | 1 ...... 1202 | if(iflag3.eq.1.and.iflag1.eq.1.and.itill1.lt.mf1(i)-1) goto 7776 | 2 Warning: Legacy Extension: Label at (1) is not in the same block as the GOTO statement at (2) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:1176:5: 1176 | 7778 continue | 1 ...... 1203 | if(iflag4.eq.1.and.iflag2.eq.1.and.itill2.lt.mf2(i)-1) goto 7778 | 2 Warning: Legacy Extension: Label at (1) is not in the same block as the GOTO statement at (2) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:1308:5: 1308 | 6667 continue | 1 ...... 1367 | if(iflag5.eq.1.and.itill1.lt.nseq1-1.and.iflag1.eq.1)goto 6667 | 2 Warning: Legacy Extension: Label at (1) is not in the same block as the GOTO statement at (2) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:1339:5: 1339 | 6665 continue | 1 ...... 1368 | if(iflag6.eq.1.and.itill2.lt.nseq2-1.and.iflag2.eq.1)goto 6665 | 2 Warning: Legacy Extension: Label at (1) is not in the same block as the GOTO statement at (2) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:227:72: 227 | call interface(pdb1,pdb2,int_cut) | 1 Error: More actual than formal arguments in procedure call at (1) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:492:72: 492 | 18 call nexper(ismall,a,mtc,even) | 1 Error: Type mismatch in argument ‘even’ at (1); passed REAL(4) to LOGICAL(4) /var/tmp/portage/sci-chemistry/mm-align-20120321/work/MM-align.f:518:72: 518 | 17 call nexper(ibig,a,mtc,even) | 1 Error: Type mismatch in argument ‘even’ at (1); passed REAL(4) to LOGICAL(4) make[2]: *** [CMakeFiles/MMalign.dir/build.make:83: CMakeFiles/MMalign.dir/MM-align.f.o] Error 1 make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/mm-align-20120321/work/mm-align-20120321_build' make[1]: *** [CMakeFiles/Makefile2:96: CMakeFiles/MMalign.dir/all] Error 2 make[1]: Leaving directory '/var/tmp/portage/sci-chemistry/mm-align-20120321/work/mm-align-20120321_build' make: *** [Makefile:150: all] Error 2 * ERROR: sci-chemistry/mm-align-20120321::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-chemistry/mm-align-20120321::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-chemistry/mm-align-20120321::gentoo'`. * The complete build log is located at '/var/log/portage/sci-chemistry:mm-align-20120321:20200515-032442.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/mm-align-20120321/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/mm-align-20120321/temp/environment'. * Working directory: '/var/tmp/portage/sci-chemistry/mm-align-20120321/work/mm-align-20120321_build' * S: '/var/tmp/portage/sci-chemistry/mm-align-20120321/work'