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Gentoo's Bugzilla – Attachment 638304 Details for
Bug 722612
sci-mathematics/petsc-3.13.1 : * econf failed
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sci-mathematics:petsc-3.13.1:20200512-015702.log
sci-mathematics:petsc-3.13.1:20200512-015702.log (text/plain), 58.26 KB, created by
Toralf Förster
on 2020-05-12 07:19:34 UTC
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hide
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Description:
sci-mathematics:petsc-3.13.1:20200512-015702.log
Filename:
MIME Type:
Creator:
Toralf Förster
Created:
2020-05-12 07:19:34 UTC
Size:
58.26 KB
patch
obsolete
> * Package: sci-mathematics/petsc-3.13.1 > * Repository: gentoo > * Maintainer: tamiko@gentoo.org sci-mathematics@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc fftw fortran kernel_linux userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox > * Using python3.6 to build >>>> Unpacking source... >>>> Unpacking petsc-3.13.1.tar.gz to /var/tmp/portage/sci-mathematics/petsc-3.13.1/work >>>> Source unpacked in /var/tmp/portage/sci-mathematics/petsc-3.13.1/work >>>> Preparing source in /var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1 ... > * Applying petsc-3.7.0-disable-rpath.patch ... > [ ok ] > * Applying petsc-3.13.0-fix_sandbox_violation.patch ... > [ ok ] > * Applying petsc-3.13.0-make_hypre_configure.patch ... > [ ok ] > * Applying petsc-3.13.0-do_not_run_mpiexec.patch ... > [ ok ] >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1 ... >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64/petsc/lib64 scrollOutput=1 FFLAGS=-O2 -pipe -march=native -fPIC CFLAGS=-O2 -pipe -march=native -fno-common -fPIC CXXFLAGS=-O2 -pipe -march=native -fno-common -fPIC LDFLAGS=-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 --prefix=/usr/lib64/petsc --with-shared-libraries --with-single-library --with-clanguage=c --with-petsc-arch=linux-gnu-c-opt --with-precision=double --with-gnu-compilers --with-blas-lapack-lib=-lblas -llapack --with-debugging=0 --with-mpi=0 --with-cc=x86_64-pc-linux-gnu-gcc --with-cxx=x86_64-pc-linux-gnu-g++ --with-fortran=1 --with-fc=x86_64-pc-linux-gnu-gfortran --with-mpi-compilers=0 --with-scalar-type=real --with-windows-graphics=0 --with-matlab=0 --with-cmake:BOOL=1 --with-pthread=0 --with-afterimage=0 --without-hdf5 --with-hypre=0 --without-suitesparse --with-superlu=0 --without-x --without-x11 --with-ptscotch=0 --with-scalapack=0 --without-mumps --with-imagemagick=0 --with-python=0 --without-boost --with-fftw >=============================================================================== > Configuring PETSc to compile on your system >=============================================================================== >TESTING: configureExternalPackagesDir from config.framework(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/framework.py:911) >TESTING: configureDebuggers from config.utilities.debuggers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/debuggers.py:21) >TESTING: configureDirectories from PETSc.options.petscdir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/petscdir.py:23) >TESTING: getDatafilespath from PETSc.options.dataFilesPath(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/dataFilesPath.py:29) >TESTING: configureGit from config.sourceControl(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/sourceControl.py:24) >TESTING: configureInstallationMethod from PETSc.options.petscclone(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/petscclone.py:20) >TESTING: setNativeArchitecture from PETSc.options.arch(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/arch.py:31) >TESTING: configureArchitecture from PETSc.options.arch(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/arch.py:43) >TESTING: setInstallDir from PETSc.options.installDir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/installDir.py:35) >TESTING: saveReconfigure from PETSc.options.installDir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/installDir.py:73) >TESTING: cleanConfDir from PETSc.options.installDir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/installDir.py:66) >TESTING: configureInstallDir from PETSc.options.installDir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/installDir.py:50) >TESTING: restoreReconfigure from PETSc.options.installDir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/installDir.py:86) >TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/externalpackagesdir.py:15) >TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/externalpackagesdir.py:22) >TESTING: configureCLanguage from PETSc.options.languages(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/languages.py:27) >TESTING: printEnvVariables from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1715) >TESTING: resetEnvCompilers from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1722) > =============================================================================== > ***** WARNING: FCFLAGS (set to -O2 -pipe -march=native) found in environment variables - ignoring > use ./configure FCFLAGS=$FCFLAGS if you really want to use that value ****** > =============================================================================== > >TESTING: checkEnvCompilers from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1752) >TESTING: checkMPICompilerOverride from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1685) >TESTING: requireMpiLdPath from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1706) >TESTING: checkInitialFlags from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:460) >TESTING: checkCCompiler from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:630) >TESTING: checkCPreprocessor from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:669) >TESTING: checkCUDACompiler from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:705) >TESTING: checkCUDAPreprocessor from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:745) >TESTING: checkCxxCompiler from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:844) >TESTING: checkCxxPreprocessor from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:885) >TESTING: checkFortranCompiler from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:986) >TESTING: checkFortranPreprocessor from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1023) >TESTING: checkFortranComments from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1045) >TESTING: checkLargeFileIO from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1176) >TESTING: checkArchiver from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1275) >TESTING: checkSharedLinker from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1389) >TESTING: checkPIC from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1123) >TESTING: checkSharedLinkerPaths from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1501) >TESTING: checkLibC from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1531) >TESTING: checkDynamicLinker from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1577) >TESTING: output from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1626) >TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/sharedLibraries.py:36) >TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/sharedLibraries.py:52) >TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/sharedLibraries.py:97) >TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/sharedLibraries.py:103) >TESTING: configureIndexSize from PETSc.options.indexTypes(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/indexTypes.py:39) >TESTING: configureCompilerFlags from config.compilerFlags(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilerFlags.py:72) >TESTING: checkRestrict from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:150) >TESTING: checkCFormatting from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:405) >TESTING: checkCInline from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:120) >TESTING: checkDynamicLoadFlag from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:416) >TESTING: checkCLibraries from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:214) >TESTING: checkDependencyGenerationFlag from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:1363) >TESTING: checkC99Flag from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:1408) >TESTING: checkRestrict from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:150) >TESTING: checkCxxOptionalExtensions from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:435) >TESTING: checkCxxInline from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:135) >TESTING: checkCxxLibraries from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:547) >TESTING: checkCxxDialect from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:463) >TESTING: checkFortranNameMangling from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:854) >TESTING: checkFortranNameManglingDouble from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:892) >TESTING: checkFortranLibraries from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:902) >TESTING: checkFortranLinkingCxx from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:1328) >TESTING: setupFrameworkCompilers from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:1473) >TESTING: configureClosure from config.utilities.closure(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/closure.py:17) >TESTING: checkFortranTypeSizes from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:56) >TESTING: checkFortranPreprocessor from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:73) >TESTING: checkFortranDefineCompilerOption from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:96) >TESTING: checkFortran90 from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:146) >TESTING: checkFortran90FreeForm from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:162) >TESTING: checkFortran2003 from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:176) >TESTING: checkFortran90Array from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:211) >TESTING: checkFortran90AssumedType from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:298) >TESTING: checkFortranModuleInclude from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:303) >TESTING: checkFortranModuleOutput from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:369) >TESTING: checkFortranTypeStar from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:135) >TESTING: checkFortranTypeInitialize from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:125) >TESTING: configureFortranFlush from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:116) >TESTING: checkDependencyGenerationFlag from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:414) >TESTING: checkStdC from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:105) >TESTING: checkStat from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:138) >TESTING: checkSysWait from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:173) >TESTING: checkTime from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:195) >TESTING: checkMath from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:201) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) >TESTING: checkRecursiveMacros from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:216) >TESTING: configureCacheDetails from config.utilities.cacheDetails(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/cacheDetails.py:78) >TESTING: check_struct_sigaction from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:43) >TESTING: check__int64 from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:49) >TESTING: checkSizeTypes from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:55) >TESTING: checkFileTypes from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:65) >TESTING: checkIntegerTypes from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:60) >TESTING: checkPID from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:71) >TESTING: checkUID from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:75) >TESTING: checkC99Complex from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:82) >TESTING: checkCxxComplex from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:93) >TESTING: checkConst from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:104) >TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160) >TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160) >TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160) >TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160) >TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160) >TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160) >TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160) >TESTING: checkVisibility from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:194) >TESTING: configureMemAlign from PETSc.options.memAlign(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/memAlign.py:29) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: checkMath from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:264) >TESTING: checkMathErf from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:283) >TESTING: checkMathTgamma from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:292) >TESTING: checkMathLgamma from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:301) >TESTING: checkMathFenv from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:314) >TESTING: checkMathLog2 from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:322) >TESTING: checkRealtime from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:331) >TESTING: checkDynamic from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:347) >TESTING: configureLibraryOptions from PETSc.options.libraryOptions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/libraryOptions.py:37) >TESTING: configureISColorValueType from PETSc.options.libraryOptions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/libraryOptions.py:95) >TESTING: checkSysinfo from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:106) >TESTING: checkVPrintf from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:125) >TESTING: checkVFPrintf from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:131) >TESTING: checkVSNPrintf from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:137) >TESTING: checkNanosleep from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:167) >TESTING: checkMemmove from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:173) >TESTING: checkSignalHandlerType from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:143) >TESTING: checkFreeReturnType from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:153) >TESTING: checkVariableArgumentLists from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:159) >TESTING: checkClassify from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:85) >TESTING: checkMmap from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:179) >TESTING: configureMemorySize from config.utilities.getResidentSetSize(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/getResidentSetSize.py:31) >TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/fortranCommandLine.py:27) >TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/featureTestMacros.py:13) >TESTING: configureMissingUtypeTypedefs from config.utilities.missing(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/missing.py:55) >TESTING: configureMissingFunctions from config.utilities.missing(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/missing.py:61) >TESTING: configureMissingSignals from config.utilities.missing(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/missing.py:79) >TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/missing.py:96) >TESTING: configureMissingSrandPrototype from config.utilities.missing(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/missing.py:121) >TESTING: configureFPTrap from config.utilities.FPTrap(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/FPTrap.py:27) >TESTING: configureScalarType from PETSc.options.scalarTypes(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/scalarTypes.py:40) >TESTING: configurePrecision from PETSc.options.scalarTypes(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/scalarTypes.py:81) >TESTING: configureMkdir from config.programs(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/programs.py:22) >TESTING: configureAutoreconf from config.programs(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/programs.py:44) >TESTING: configurePrograms from config.programs(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/programs.py:71) >TESTING: configureMake from config.packages.make(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/make.py:87) >TESTING: setupGNUMake from config.packages.make(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/make.py:121) >TESTING: configureMakeNP from config.packages.make(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/make.py:168) >TESTING: alternateConfigureLibrary from config.packages.OpenMPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.MPICH(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.MPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/MPI.py:358) >TESTING: PetscArchMPICheck from config.packages.MPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/MPI.py:575) >TESTING: alternateConfigureLibrary from config.packages.zstd(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.yaml(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: configureLibrary from config.packages.valgrind(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:868) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) > =============================================================================== > It appears you do not have valgrind installed on your system. > We HIGHLY recommend you install it from www.valgrind.org > Or install valgrind-devel or equivalent using your package manager. > Then rerun ./configure > =============================================================================== > >TESTING: alternateConfigureLibrary from config.packages.ssl(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.sprng(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.revolve(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.radau5(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.pami(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.opengles(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.opencl(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.muparser(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.petsc4py(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/petsc4py.py:97) >TESTING: alternateConfigureLibrary from config.packages.mpi4py(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/mpi4py.py:74) >TESTING: alternateConfigureLibrary from config.packages.mpe(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.memkind(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.libmesh(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/libmesh.py:76) >TESTING: alternateConfigureLibrary from config.packages.moose(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.libjpeg(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.libceed(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.slepc(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/slepc.py:88) >TESTING: alternateConfigureLibrary from config.packages.gmp(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.mpfr(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.giflib(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.egads(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.ctetgen(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.concurrencykit(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: locateC2html from config.packages.c2html(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/c2html.py:33) >TESTING: alternateConfigureLibrary from config.packages.boost(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.silo(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.Random123(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.PARTY(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.Matlab(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.Mathematica(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: checkDependencies from config.packages.regex(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843) >TESTING: configureLibrary from config.packages.regex(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:868) >TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) >TESTING: checkVersion from config.packages.regex(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:992) >TESTING: checkSharedLibrary from config.packages.regex(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:926) >TESTING: alternateConfigureLibrary from config.packages.opengl(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.glut(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.CoDiPack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.adblaslapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.cuda(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.ADOLC(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: locateCMake from config.packages.cmake(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/cmake.py:42) >TESTING: alternateConfigureLibrary from config.packages.googletest(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.unittestcpp(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.eigen(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.szlib(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.zlib(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.tetgen(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.tchem(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.saws(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.libpng(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.combblas(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.metis(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.pragmatic(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.parmetis(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.Chaco(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.hdf5(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.med(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.cgns(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.ascem-io(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.pflotran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.alquimia(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.SAMRAI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.ADIOS2(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.pnetcdf(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.netcdf(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.exodusii(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.fblaslapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.X(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.Triangle(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.GLVis(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.hwloc(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.pthread(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.PTScotch(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.Zoltan(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.ADIOS(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.openmp(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.viennacl(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.ColPack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.openblas(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.blis(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: checkDependencies from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843) >TESTING: configureLibrary from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:447) >TESTING: checkLib from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:107) >TESTING: checkMKL from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:518) >TESTING: checkESSL from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:556) >TESTING: checkPESSL from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:564) >TESTING: checkMissing from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:589) >TESTING: checklsame from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:605) >TESTING: checkRuntimeIssues from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:664) >TESTING: checkVersion from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:992) >TESTING: checkSharedLibrary from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:926) >TESTING: alternateConfigureLibrary from config.packages.sundials(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.spai(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.pARMS(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.p4est(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: checkDependencies from config.packages.mkl_sparse_optimize(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843) >TESTING: configureLibrary from config.packages.mkl_sparse_optimize(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/mkl_sparse_optimize.py:48) >TESTING: checkVersion from config.packages.mkl_sparse_optimize(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:992) >TESTING: checkSharedLibrary from config.packages.mkl_sparse_optimize(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:926) >TESTING: checkDependencies from config.packages.mkl_sparse(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843) >TESTING: configureLibrary from config.packages.mkl_sparse(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/mkl_sparse.py:21) >TESTING: checkVersion from config.packages.mkl_sparse(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:992) >TESTING: checkSharedLibrary from config.packages.mkl_sparse(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:926) >TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) >TESTING: alternateConfigureLibrary from config.packages.hpddm(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/hpddm.py:120) >TESTING: checkDependencies from config.packages.fftw(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843) >******************************************************************************* > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): >------------------------------------------------------------------------------- >Did not find package MPI needed by fftw. >Enable the package using --with-mpi >******************************************************************************* > > * ERROR: sci-mathematics/petsc-3.13.1::gentoo failed (configure phase): > * econf failed > * > * Call stack: > * ebuild.sh, line 125: Called src_configure > * environment, line 2745: Called econf 'scrollOutput=1' 'FFLAGS=-O2 -pipe -march=native -fPIC' 'CFLAGS=-O2 -pipe -march=native -fno-common -fPIC' 'CXXFLAGS=-O2 -pipe -march=native -fno-common -fPIC' 'LDFLAGS=-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0' '--prefix=/usr/lib64/petsc' '--with-shared-libraries' '--with-single-library' '--with-clanguage=c' '--with-petsc-arch=linux-gnu-c-opt' '--with-precision=double' '--with-gnu-compilers' '--with-blas-lapack-lib=-lblas -llapack ' '--with-debugging=0' '--with-mpi=0' '--with-cc=x86_64-pc-linux-gnu-gcc' '--with-cxx=x86_64-pc-linux-gnu-g++' '--with-fortran=1' '--with-fc=x86_64-pc-linux-gnu-gfortran' '--with-mpi-compilers=0' '--with-scalar-type=real' '--with-windows-graphics=0' '--with-matlab=0' '--with-cmake:BOOL=1' '--with-pthread=0' '--with-afterimage=0' '--without-hdf5' '--with-hypre=0' '--without-suitesparse' '--with-superlu=0' '--without-x' '--without-x11' '--with-ptscotch=0' '--with-scalapack=0' '--without-mumps' '--with-imagemagick=0' '--with-python=0' '--without-boost' '--with-fftw' > * phase-helpers.sh, line 681: Called __helpers_die 'econf failed' > * isolated-functions.sh, line 112: Called die > * The specific snippet of code: > * die "$@" > * > * If you need support, post the output of `emerge --info '=sci-mathematics/petsc-3.13.1::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-mathematics/petsc-3.13.1::gentoo'`. > * The complete build log is located at '/var/log/portage/sci-mathematics:petsc-3.13.1:20200512-015702.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/environment'. > * Working directory: '/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1' > * S: '/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1'
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