sci-mathematics:petsc-3.13.1:20200512-015702.log

sci-mathematics:petsc-3.13.1:20200512-015702.log (text/plain), 58.26 KB, created by Toralf Förster on 2020-05-12 07:19:34 UTC

 * Package:    sci-mathematics/petsc-3.13.1
 * Repository: gentoo
 * Maintainer: [e-mail] [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc fftw fortran kernel_linux userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
 * Using python3.6 to build
>>> Unpacking source...
>>> Unpacking petsc-3.13.1.tar.gz to /var/tmp/portage/sci-mathematics/petsc-3.13.1/work
>>> Source unpacked in /var/tmp/portage/sci-mathematics/petsc-3.13.1/work
>>> Preparing source in /var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1 ...
 * Applying petsc-3.7.0-disable-rpath.patch ...
 [ ok ]
 * Applying petsc-3.13.0-fix_sandbox_violation.patch ...
 [ ok ]
 * Applying petsc-3.13.0-make_hypre_configure.patch ...
 [ ok ]
 * Applying petsc-3.13.0-do_not_run_mpiexec.patch ...
 [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1 ...
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64/petsc/lib64 scrollOutput=1 FFLAGS=-O2 -pipe -march=native -fPIC CFLAGS=-O2 -pipe -march=native  -fno-common -fPIC CXXFLAGS=-O2 -pipe -march=native  -fno-common -fPIC LDFLAGS=-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 --prefix=/usr/lib64/petsc --with-shared-libraries --with-single-library --with-clanguage=c --with-petsc-arch=linux-gnu-c-opt --with-precision=double --with-gnu-compilers --with-blas-lapack-lib=-lblas -llapack  --with-debugging=0 --with-mpi=0 --with-cc=x86_64-pc-linux-gnu-gcc --with-cxx=x86_64-pc-linux-gnu-g++ --with-fortran=1 --with-fc=x86_64-pc-linux-gnu-gfortran --with-mpi-compilers=0 --with-scalar-type=real --with-windows-graphics=0 --with-matlab=0 --with-cmake:BOOL=1 --with-pthread=0 --with-afterimage=0 --without-hdf5 --with-hypre=0 --without-suitesparse --with-superlu=0 --without-x --without-x11 --with-ptscotch=0 --with-scalapack=0 --without-mumps --with-imagemagick=0 --with-python=0 --without-boost --with-fftw
===============================================================================
             Configuring PETSc to compile on your system                       
===============================================================================
TESTING: configureExternalPackagesDir from config.framework(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/framework.py:911)
TESTING: configureDebuggers from config.utilities.debuggers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/debuggers.py:21)
TESTING: configureDirectories from PETSc.options.petscdir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/petscdir.py:23)
TESTING: getDatafilespath from PETSc.options.dataFilesPath(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/dataFilesPath.py:29)
TESTING: configureGit from config.sourceControl(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/sourceControl.py:24)
TESTING: configureInstallationMethod from PETSc.options.petscclone(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/petscclone.py:20)
TESTING: setNativeArchitecture from PETSc.options.arch(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/arch.py:31)
TESTING: configureArchitecture from PETSc.options.arch(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/arch.py:43)
TESTING: setInstallDir from PETSc.options.installDir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/installDir.py:35)
TESTING: saveReconfigure from PETSc.options.installDir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/installDir.py:73)
TESTING: cleanConfDir from PETSc.options.installDir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/installDir.py:66)
TESTING: configureInstallDir from PETSc.options.installDir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/installDir.py:50)
TESTING: restoreReconfigure from PETSc.options.installDir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/installDir.py:86)
TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/externalpackagesdir.py:15)
TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/externalpackagesdir.py:22)
TESTING: configureCLanguage from PETSc.options.languages(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/languages.py:27)
TESTING: printEnvVariables from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1715)
TESTING: resetEnvCompilers from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1722)
              ===============================================================================
                    ***** WARNING: FCFLAGS (set to -O2 -pipe -march=native) found in environment variables - ignoring 
                     use ./configure FCFLAGS=$FCFLAGS if you really want to use that value ******
              ===============================================================================
            
TESTING: checkEnvCompilers from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1752)
TESTING: checkMPICompilerOverride from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1685)
TESTING: requireMpiLdPath from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1706)
TESTING: checkInitialFlags from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:460)
TESTING: checkCCompiler from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:630)
TESTING: checkCPreprocessor from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:669)
TESTING: checkCUDACompiler from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:705)
TESTING: checkCUDAPreprocessor from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:745)
TESTING: checkCxxCompiler from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:844)
TESTING: checkCxxPreprocessor from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:885)
TESTING: checkFortranCompiler from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:986)
TESTING: checkFortranPreprocessor from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1023)
TESTING: checkFortranComments from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1045)
TESTING: checkLargeFileIO from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1176)
TESTING: checkArchiver from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1275)
TESTING: checkSharedLinker from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1389)
TESTING: checkPIC from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1123)
TESTING: checkSharedLinkerPaths from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1501)
TESTING: checkLibC from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1531)
TESTING: checkDynamicLinker from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1577)
TESTING: output from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1626)
TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/sharedLibraries.py:36)
TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/sharedLibraries.py:52)
TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/sharedLibraries.py:97)
TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/sharedLibraries.py:103)
TESTING: configureIndexSize from PETSc.options.indexTypes(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/indexTypes.py:39)
TESTING: configureCompilerFlags from config.compilerFlags(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilerFlags.py:72)
TESTING: checkRestrict from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:150)
TESTING: checkCFormatting from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:405)
TESTING: checkCInline from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:120)
TESTING: checkDynamicLoadFlag from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:416)
TESTING: checkCLibraries from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:214)
TESTING: checkDependencyGenerationFlag from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:1363)
TESTING: checkC99Flag from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:1408)
TESTING: checkRestrict from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:150)
TESTING: checkCxxOptionalExtensions from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:435)
TESTING: checkCxxInline from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:135)
TESTING: checkCxxLibraries from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:547)
TESTING: checkCxxDialect from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:463)
TESTING: checkFortranNameMangling from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:854)
TESTING: checkFortranNameManglingDouble from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:892)
TESTING: checkFortranLibraries from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:902)
TESTING: checkFortranLinkingCxx from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:1328)
TESTING: setupFrameworkCompilers from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:1473)
TESTING: configureClosure from config.utilities.closure(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/closure.py:17)
TESTING: checkFortranTypeSizes from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:56)
TESTING: checkFortranPreprocessor from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:73)
TESTING: checkFortranDefineCompilerOption from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:96)
TESTING: checkFortran90 from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:146)
TESTING: checkFortran90FreeForm from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:162)
TESTING: checkFortran2003 from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:176)
TESTING: checkFortran90Array from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:211)
TESTING: checkFortran90AssumedType from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:298)
TESTING: checkFortranModuleInclude from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:303)
TESTING: checkFortranModuleOutput from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:369)
TESTING: checkFortranTypeStar from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:135)
TESTING: checkFortranTypeInitialize from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:125)
TESTING: configureFortranFlush from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:116)
TESTING: checkDependencyGenerationFlag from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:414)
TESTING: checkStdC from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:105)
TESTING: checkStat from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:138)
TESTING: checkSysWait from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:173)
TESTING: checkTime from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:195)
TESTING: checkMath from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:201)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77)
TESTING: checkRecursiveMacros from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:216)
TESTING: configureCacheDetails from config.utilities.cacheDetails(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/cacheDetails.py:78)
TESTING: check_struct_sigaction from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:43)
TESTING: check__int64 from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:49)
TESTING: checkSizeTypes from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:55)
TESTING: checkFileTypes from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:65)
TESTING: checkIntegerTypes from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:60)
TESTING: checkPID from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:71)
TESTING: checkUID from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:75)
TESTING: checkC99Complex from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:82)
TESTING: checkCxxComplex from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:93)
TESTING: checkConst from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:104)
TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160)
TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160)
TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160)
TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160)
TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160)
TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160)
TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160)
TESTING: checkVisibility from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:194)
TESTING: configureMemAlign from PETSc.options.memAlign(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/memAlign.py:29)
TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157)
TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157)
TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157)
TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157)
TESTING: checkMath from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:264)
TESTING: checkMathErf from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:283)
TESTING: checkMathTgamma from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:292)
TESTING: checkMathLgamma from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:301)
TESTING: checkMathFenv from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:314)
TESTING: checkMathLog2 from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:322)
TESTING: checkRealtime from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:331)
TESTING: checkDynamic from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:347)
TESTING: configureLibraryOptions from PETSc.options.libraryOptions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/libraryOptions.py:37)
TESTING: configureISColorValueType from PETSc.options.libraryOptions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/libraryOptions.py:95)
TESTING: checkSysinfo from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:106)
TESTING: checkVPrintf from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:125)
TESTING: checkVFPrintf from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:131)
TESTING: checkVSNPrintf from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:137)
TESTING: checkNanosleep from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:167)
TESTING: checkMemmove from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:173)
TESTING: checkSignalHandlerType from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:143)
TESTING: checkFreeReturnType from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:153)
TESTING: checkVariableArgumentLists from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:159)
TESTING: checkClassify from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:85)
TESTING: checkMmap from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:179)
TESTING: configureMemorySize from config.utilities.getResidentSetSize(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/getResidentSetSize.py:31)
TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/fortranCommandLine.py:27)
TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/featureTestMacros.py:13)
TESTING: configureMissingUtypeTypedefs from config.utilities.missing(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/missing.py:55)
TESTING: configureMissingFunctions from config.utilities.missing(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/missing.py:61)
TESTING: configureMissingSignals from config.utilities.missing(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/missing.py:79)
TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/missing.py:96)
TESTING: configureMissingSrandPrototype from config.utilities.missing(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/missing.py:121)
TESTING: configureFPTrap from config.utilities.FPTrap(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/FPTrap.py:27)
TESTING: configureScalarType from PETSc.options.scalarTypes(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/scalarTypes.py:40)
TESTING: configurePrecision from PETSc.options.scalarTypes(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/scalarTypes.py:81)
TESTING: configureMkdir from config.programs(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/programs.py:22)
TESTING: configureAutoreconf from config.programs(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/programs.py:44)
TESTING: configurePrograms from config.programs(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/programs.py:71)
TESTING: configureMake from config.packages.make(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/make.py:87)
TESTING: setupGNUMake from config.packages.make(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/make.py:121)
TESTING: configureMakeNP from config.packages.make(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/make.py:168)
TESTING: alternateConfigureLibrary from config.packages.OpenMPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.MPICH(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.MPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/MPI.py:358)
TESTING: PetscArchMPICheck from config.packages.MPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/MPI.py:575)
TESTING: alternateConfigureLibrary from config.packages.zstd(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.yaml(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: configureLibrary from config.packages.valgrind(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:868)
TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157)
TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86)
TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157)
TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86)
TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157)
TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86)
          ===============================================================================
                It appears you do not have valgrind installed on your system.
                We HIGHLY recommend you install it from www.valgrind.org
                Or install valgrind-devel or equivalent using your package manager.
                Then rerun ./configure
          ===============================================================================
        
TESTING: alternateConfigureLibrary from config.packages.ssl(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.sprng(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.revolve(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.radau5(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.pami(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.opengles(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.opencl(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.muparser(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.petsc4py(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/petsc4py.py:97)
TESTING: alternateConfigureLibrary from config.packages.mpi4py(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/mpi4py.py:74)
TESTING: alternateConfigureLibrary from config.packages.mpe(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.memkind(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.libmesh(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/libmesh.py:76)
TESTING: alternateConfigureLibrary from config.packages.moose(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.libjpeg(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.libceed(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.slepc(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/slepc.py:88)
TESTING: alternateConfigureLibrary from config.packages.gmp(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.mpfr(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.giflib(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.egads(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.ctetgen(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.concurrencykit(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: locateC2html from config.packages.c2html(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/c2html.py:33)
TESTING: alternateConfigureLibrary from config.packages.boost(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.silo(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.Random123(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.PARTY(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.Matlab(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.Mathematica(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: checkDependencies from config.packages.regex(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843)
TESTING: configureLibrary from config.packages.regex(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:868)
TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157)
TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86)
TESTING: checkVersion from config.packages.regex(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:992)
TESTING: checkSharedLibrary from config.packages.regex(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:926)
TESTING: alternateConfigureLibrary from config.packages.opengl(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.glut(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.CoDiPack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.adblaslapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.cuda(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.ADOLC(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: locateCMake from config.packages.cmake(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/cmake.py:42)
TESTING: alternateConfigureLibrary from config.packages.googletest(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.unittestcpp(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.eigen(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.szlib(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.zlib(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.tetgen(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.tchem(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.saws(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.libpng(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.combblas(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.metis(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.pragmatic(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.parmetis(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.Chaco(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.hdf5(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.med(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.cgns(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.ascem-io(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.pflotran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.alquimia(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.SAMRAI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.ADIOS2(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.pnetcdf(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.netcdf(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.exodusii(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.fblaslapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.X(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.Triangle(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.GLVis(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.hwloc(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.pthread(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.PTScotch(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.Zoltan(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.ADIOS(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.openmp(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.viennacl(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.ColPack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.openblas(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.blis(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: checkDependencies from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843)
TESTING: configureLibrary from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:447)
TESTING: checkLib from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:107)
TESTING: checkMKL from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:518)
TESTING: checkESSL from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:556)
TESTING: checkPESSL from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:564)
TESTING: checkMissing from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:589)
TESTING: checklsame from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:605)
TESTING: checkRuntimeIssues from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:664)
TESTING: checkVersion from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:992)
TESTING: checkSharedLibrary from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:926)
TESTING: alternateConfigureLibrary from config.packages.sundials(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.spai(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.pARMS(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.p4est(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: checkDependencies from config.packages.mkl_sparse_optimize(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843)
TESTING: configureLibrary from config.packages.mkl_sparse_optimize(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/mkl_sparse_optimize.py:48)
TESTING: checkVersion from config.packages.mkl_sparse_optimize(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:992)
TESTING: checkSharedLibrary from config.packages.mkl_sparse_optimize(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:926)
TESTING: checkDependencies from config.packages.mkl_sparse(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843)
TESTING: configureLibrary from config.packages.mkl_sparse(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/mkl_sparse.py:21)
TESTING: checkVersion from config.packages.mkl_sparse(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:992)
TESTING: checkSharedLibrary from config.packages.mkl_sparse(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:926)
TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930)
TESTING: alternateConfigureLibrary from config.packages.hpddm(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/hpddm.py:120)
TESTING: checkDependencies from config.packages.fftw(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843)
*******************************************************************************
         UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for details):
-------------------------------------------------------------------------------
Did not find package MPI needed by fftw.
Enable the package using --with-mpi
*******************************************************************************

 * ERROR: sci-mathematics/petsc-3.13.1::gentoo failed (configure phase):
 *   econf failed
 * 
 * Call stack:
 *               ebuild.sh, line  125:  Called src_configure
 *             environment, line 2745:  Called econf 'scrollOutput=1' 'FFLAGS=-O2 -pipe -march=native -fPIC' 'CFLAGS=-O2 -pipe -march=native  -fno-common -fPIC' 'CXXFLAGS=-O2 -pipe -march=native  -fno-common -fPIC' 'LDFLAGS=-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0' '--prefix=/usr/lib64/petsc' '--with-shared-libraries' '--with-single-library' '--with-clanguage=c' '--with-petsc-arch=linux-gnu-c-opt' '--with-precision=double' '--with-gnu-compilers' '--with-blas-lapack-lib=-lblas -llapack ' '--with-debugging=0' '--with-mpi=0' '--with-cc=x86_64-pc-linux-gnu-gcc' '--with-cxx=x86_64-pc-linux-gnu-g++' '--with-fortran=1' '--with-fc=x86_64-pc-linux-gnu-gfortran' '--with-mpi-compilers=0' '--with-scalar-type=real' '--with-windows-graphics=0' '--with-matlab=0' '--with-cmake:BOOL=1' '--with-pthread=0' '--with-afterimage=0' '--without-hdf5' '--with-hypre=0' '--without-suitesparse' '--with-superlu=0' '--without-x' '--without-x11' '--with-ptscotch=0' '--with-scalapack=0' '--without-mumps' '--with-imagemagick=0' '--with-python=0' '--without-boost' '--with-fftw'
 *        phase-helpers.sh, line  681:  Called __helpers_die 'econf failed'
 *   isolated-functions.sh, line  112:  Called die
 * The specific snippet of code:
 *   		die "$@"
 * 
 * If you need support, post the output of `emerge --info '=sci-mathematics/petsc-3.13.1::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-mathematics/petsc-3.13.1::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-mathematics:petsc-3.13.1:20200512-015702.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1'
 * S: '/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1'