* Package: sci-mathematics/petsc-3.13.1 * Repository: gentoo * Maintainer: tamiko@gentoo.org sci-mathematics@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc fftw fortran kernel_linux userland_GNU * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox * Using python3.6 to build >>> Unpacking source... >>> Unpacking petsc-3.13.1.tar.gz to /var/tmp/portage/sci-mathematics/petsc-3.13.1/work >>> Source unpacked in /var/tmp/portage/sci-mathematics/petsc-3.13.1/work >>> Preparing source in /var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1 ... * Applying petsc-3.7.0-disable-rpath.patch ... [ ok ] * Applying petsc-3.13.0-fix_sandbox_violation.patch ... [ ok ] * Applying petsc-3.13.0-make_hypre_configure.patch ... [ ok ] * Applying petsc-3.13.0-do_not_run_mpiexec.patch ... [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1 ... ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64/petsc/lib64 scrollOutput=1 FFLAGS=-O2 -pipe -march=native -fPIC CFLAGS=-O2 -pipe -march=native -fno-common -fPIC CXXFLAGS=-O2 -pipe -march=native -fno-common -fPIC LDFLAGS=-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 --prefix=/usr/lib64/petsc --with-shared-libraries --with-single-library --with-clanguage=c --with-petsc-arch=linux-gnu-c-opt --with-precision=double --with-gnu-compilers --with-blas-lapack-lib=-lblas -llapack --with-debugging=0 --with-mpi=0 --with-cc=x86_64-pc-linux-gnu-gcc --with-cxx=x86_64-pc-linux-gnu-g++ --with-fortran=1 --with-fc=x86_64-pc-linux-gnu-gfortran --with-mpi-compilers=0 --with-scalar-type=real --with-windows-graphics=0 --with-matlab=0 --with-cmake:BOOL=1 --with-pthread=0 --with-afterimage=0 --without-hdf5 --with-hypre=0 --without-suitesparse --with-superlu=0 --without-x --without-x11 --with-ptscotch=0 --with-scalapack=0 --without-mumps --with-imagemagick=0 --with-python=0 --without-boost --with-fftw =============================================================================== Configuring PETSc to compile on your system =============================================================================== TESTING: configureExternalPackagesDir from config.framework(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/framework.py:911) TESTING: configureDebuggers from config.utilities.debuggers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/debuggers.py:21) TESTING: configureDirectories from PETSc.options.petscdir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/petscdir.py:23) TESTING: getDatafilespath from PETSc.options.dataFilesPath(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/dataFilesPath.py:29) TESTING: configureGit from config.sourceControl(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/sourceControl.py:24) TESTING: configureInstallationMethod from PETSc.options.petscclone(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/petscclone.py:20) TESTING: setNativeArchitecture from PETSc.options.arch(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/arch.py:31) TESTING: configureArchitecture from PETSc.options.arch(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/arch.py:43) TESTING: setInstallDir from PETSc.options.installDir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/installDir.py:35) TESTING: saveReconfigure from PETSc.options.installDir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/installDir.py:73) TESTING: cleanConfDir from PETSc.options.installDir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/installDir.py:66) TESTING: configureInstallDir from PETSc.options.installDir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/installDir.py:50) TESTING: restoreReconfigure from PETSc.options.installDir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/installDir.py:86) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/externalpackagesdir.py:15) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/externalpackagesdir.py:22) TESTING: configureCLanguage from PETSc.options.languages(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/languages.py:27) TESTING: printEnvVariables from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1715) TESTING: resetEnvCompilers from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1722) =============================================================================== ***** WARNING: FCFLAGS (set to -O2 -pipe -march=native) found in environment variables - ignoring use ./configure FCFLAGS=$FCFLAGS if you really want to use that value ****** =============================================================================== TESTING: checkEnvCompilers from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1752) TESTING: checkMPICompilerOverride from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1685) TESTING: requireMpiLdPath from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1706) TESTING: checkInitialFlags from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:460) TESTING: checkCCompiler from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:630) TESTING: checkCPreprocessor from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:669) TESTING: checkCUDACompiler from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:705) TESTING: checkCUDAPreprocessor from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:745) TESTING: checkCxxCompiler from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:844) TESTING: checkCxxPreprocessor from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:885) TESTING: checkFortranCompiler from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:986) TESTING: checkFortranPreprocessor from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1023) TESTING: checkFortranComments from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1045) TESTING: checkLargeFileIO from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1176) TESTING: checkArchiver from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1275) TESTING: checkSharedLinker from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1389) TESTING: checkPIC from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1123) TESTING: checkSharedLinkerPaths from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1501) TESTING: checkLibC from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1531) TESTING: checkDynamicLinker from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1577) TESTING: output from config.setCompilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/setCompilers.py:1626) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/sharedLibraries.py:36) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/sharedLibraries.py:52) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/sharedLibraries.py:97) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/sharedLibraries.py:103) TESTING: configureIndexSize from PETSc.options.indexTypes(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/indexTypes.py:39) TESTING: configureCompilerFlags from config.compilerFlags(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilerFlags.py:72) TESTING: checkRestrict from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:150) TESTING: checkCFormatting from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:405) TESTING: checkCInline from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:120) TESTING: checkDynamicLoadFlag from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:416) TESTING: checkCLibraries from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:214) TESTING: checkDependencyGenerationFlag from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:1363) TESTING: checkC99Flag from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:1408) TESTING: checkRestrict from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:150) TESTING: checkCxxOptionalExtensions from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:435) TESTING: checkCxxInline from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:135) TESTING: checkCxxLibraries from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:547) TESTING: checkCxxDialect from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:463) TESTING: checkFortranNameMangling from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:854) TESTING: checkFortranNameManglingDouble from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:892) TESTING: checkFortranLibraries from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:902) TESTING: checkFortranLinkingCxx from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:1328) TESTING: setupFrameworkCompilers from config.compilers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilers.py:1473) TESTING: configureClosure from config.utilities.closure(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/closure.py:17) TESTING: checkFortranTypeSizes from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:56) TESTING: checkFortranPreprocessor from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:73) TESTING: checkFortranDefineCompilerOption from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:96) TESTING: checkFortran90 from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:146) TESTING: checkFortran90FreeForm from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:162) TESTING: checkFortran2003 from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:176) TESTING: checkFortran90Array from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:211) TESTING: checkFortran90AssumedType from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:298) TESTING: checkFortranModuleInclude from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:303) TESTING: checkFortranModuleOutput from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:369) TESTING: checkFortranTypeStar from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:135) TESTING: checkFortranTypeInitialize from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:125) TESTING: configureFortranFlush from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:116) TESTING: checkDependencyGenerationFlag from config.compilersFortran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/compilersFortran.py:414) TESTING: checkStdC from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:105) TESTING: checkStat from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:138) TESTING: checkSysWait from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:173) TESTING: checkTime from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:195) TESTING: checkMath from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:201) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:77) TESTING: checkRecursiveMacros from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:216) TESTING: configureCacheDetails from config.utilities.cacheDetails(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/cacheDetails.py:78) TESTING: check_struct_sigaction from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:43) TESTING: check__int64 from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:49) TESTING: checkSizeTypes from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:55) TESTING: checkFileTypes from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:65) TESTING: checkIntegerTypes from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:60) TESTING: checkPID from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:71) TESTING: checkUID from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:75) TESTING: checkC99Complex from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:82) TESTING: checkCxxComplex from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:93) TESTING: checkConst from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:104) TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:160) TESTING: checkVisibility from config.types(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/types.py:194) TESTING: configureMemAlign from PETSc.options.memAlign(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/memAlign.py:29) TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) TESTING: checkMath from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:264) TESTING: checkMathErf from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:283) TESTING: checkMathTgamma from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:292) TESTING: checkMathLgamma from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:301) TESTING: checkMathFenv from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:314) TESTING: checkMathLog2 from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:322) TESTING: checkRealtime from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:331) TESTING: checkDynamic from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:347) TESTING: configureLibraryOptions from PETSc.options.libraryOptions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/libraryOptions.py:37) TESTING: configureISColorValueType from PETSc.options.libraryOptions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/libraryOptions.py:95) TESTING: checkSysinfo from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:106) TESTING: checkVPrintf from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:125) TESTING: checkVFPrintf from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:131) TESTING: checkVSNPrintf from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:137) TESTING: checkNanosleep from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:167) TESTING: checkMemmove from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:173) TESTING: checkSignalHandlerType from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:143) TESTING: checkFreeReturnType from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:153) TESTING: checkVariableArgumentLists from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:159) TESTING: checkClassify from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:85) TESTING: checkMmap from config.functions(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/functions.py:179) TESTING: configureMemorySize from config.utilities.getResidentSetSize(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/getResidentSetSize.py:31) TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/fortranCommandLine.py:27) TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/featureTestMacros.py:13) TESTING: configureMissingUtypeTypedefs from config.utilities.missing(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/missing.py:55) TESTING: configureMissingFunctions from config.utilities.missing(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/missing.py:61) TESTING: configureMissingSignals from config.utilities.missing(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/missing.py:79) TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/missing.py:96) TESTING: configureMissingSrandPrototype from config.utilities.missing(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/missing.py:121) TESTING: configureFPTrap from config.utilities.FPTrap(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/utilities/FPTrap.py:27) TESTING: configureScalarType from PETSc.options.scalarTypes(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/scalarTypes.py:40) TESTING: configurePrecision from PETSc.options.scalarTypes(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/PETSc/options/scalarTypes.py:81) TESTING: configureMkdir from config.programs(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/programs.py:22) TESTING: configureAutoreconf from config.programs(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/programs.py:44) TESTING: configurePrograms from config.programs(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/programs.py:71) TESTING: configureMake from config.packages.make(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/make.py:87) TESTING: setupGNUMake from config.packages.make(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/make.py:121) TESTING: configureMakeNP from config.packages.make(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/make.py:168) TESTING: alternateConfigureLibrary from config.packages.OpenMPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.MPICH(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.MPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/MPI.py:358) TESTING: PetscArchMPICheck from config.packages.MPI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/MPI.py:575) TESTING: alternateConfigureLibrary from config.packages.zstd(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.yaml(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: configureLibrary from config.packages.valgrind(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:868) TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) =============================================================================== It appears you do not have valgrind installed on your system. We HIGHLY recommend you install it from www.valgrind.org Or install valgrind-devel or equivalent using your package manager. Then rerun ./configure =============================================================================== TESTING: alternateConfigureLibrary from config.packages.ssl(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.sprng(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.revolve(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.radau5(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.pami(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.opengles(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.opencl(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.muparser(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.petsc4py(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/petsc4py.py:97) TESTING: alternateConfigureLibrary from config.packages.mpi4py(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/mpi4py.py:74) TESTING: alternateConfigureLibrary from config.packages.mpe(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.memkind(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.libmesh(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/libmesh.py:76) TESTING: alternateConfigureLibrary from config.packages.moose(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.libjpeg(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.libceed(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.slepc(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/slepc.py:88) TESTING: alternateConfigureLibrary from config.packages.gmp(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.mpfr(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.giflib(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.egads(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ctetgen(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.concurrencykit(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: locateC2html from config.packages.c2html(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/c2html.py:33) TESTING: alternateConfigureLibrary from config.packages.boost(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.silo(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Random123(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.PARTY(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Matlab(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Mathematica(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: checkDependencies from config.packages.regex(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843) TESTING: configureLibrary from config.packages.regex(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:868) TESTING: check from config.libraries(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/libraries.py:157) TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/headers.py:86) TESTING: checkVersion from config.packages.regex(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:992) TESTING: checkSharedLibrary from config.packages.regex(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:926) TESTING: alternateConfigureLibrary from config.packages.opengl(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.glut(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.CoDiPack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.adblaslapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.cuda(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ADOLC(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: locateCMake from config.packages.cmake(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/cmake.py:42) TESTING: alternateConfigureLibrary from config.packages.googletest(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.unittestcpp(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.eigen(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.szlib(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.zlib(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.tetgen(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.tchem(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.saws(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.libpng(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.combblas(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.metis(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.pragmatic(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.parmetis(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Chaco(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.hdf5(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.med(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.cgns(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ascem-io(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.pflotran(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.alquimia(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.SAMRAI(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ADIOS2(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.pnetcdf(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.netcdf(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.exodusii(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.fblaslapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.X(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Triangle(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.GLVis(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.hwloc(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.pthread(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.PTScotch(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Zoltan(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ADIOS(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.openmp(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.viennacl(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ColPack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.openblas(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.blis(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: checkDependencies from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843) TESTING: configureLibrary from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:447) TESTING: checkLib from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:107) TESTING: checkMKL from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:518) TESTING: checkESSL from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:556) TESTING: checkPESSL from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:564) TESTING: checkMissing from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:589) TESTING: checklsame from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:605) TESTING: checkRuntimeIssues from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/BlasLapack.py:664) TESTING: checkVersion from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:992) TESTING: checkSharedLibrary from config.packages.BlasLapack(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:926) TESTING: alternateConfigureLibrary from config.packages.sundials(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.spai(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.pARMS(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.p4est(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: checkDependencies from config.packages.mkl_sparse_optimize(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843) TESTING: configureLibrary from config.packages.mkl_sparse_optimize(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/mkl_sparse_optimize.py:48) TESTING: checkVersion from config.packages.mkl_sparse_optimize(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:992) TESTING: checkSharedLibrary from config.packages.mkl_sparse_optimize(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:926) TESTING: checkDependencies from config.packages.mkl_sparse(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843) TESTING: configureLibrary from config.packages.mkl_sparse(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/mkl_sparse.py:21) TESTING: checkVersion from config.packages.mkl_sparse(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:992) TESTING: checkSharedLibrary from config.packages.mkl_sparse(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:926) TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.hpddm(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/packages/hpddm.py:120) TESTING: checkDependencies from config.packages.fftw(/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1/config/BuildSystem/config/package.py:843) ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Did not find package MPI needed by fftw. Enable the package using --with-mpi ******************************************************************************* * ERROR: sci-mathematics/petsc-3.13.1::gentoo failed (configure phase): * econf failed * * Call stack: * ebuild.sh, line 125: Called src_configure * environment, line 2745: Called econf 'scrollOutput=1' 'FFLAGS=-O2 -pipe -march=native -fPIC' 'CFLAGS=-O2 -pipe -march=native -fno-common -fPIC' 'CXXFLAGS=-O2 -pipe -march=native -fno-common -fPIC' 'LDFLAGS=-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0' '--prefix=/usr/lib64/petsc' '--with-shared-libraries' '--with-single-library' '--with-clanguage=c' '--with-petsc-arch=linux-gnu-c-opt' '--with-precision=double' '--with-gnu-compilers' '--with-blas-lapack-lib=-lblas -llapack ' '--with-debugging=0' '--with-mpi=0' '--with-cc=x86_64-pc-linux-gnu-gcc' '--with-cxx=x86_64-pc-linux-gnu-g++' '--with-fortran=1' '--with-fc=x86_64-pc-linux-gnu-gfortran' '--with-mpi-compilers=0' '--with-scalar-type=real' '--with-windows-graphics=0' '--with-matlab=0' '--with-cmake:BOOL=1' '--with-pthread=0' '--with-afterimage=0' '--without-hdf5' '--with-hypre=0' '--without-suitesparse' '--with-superlu=0' '--without-x' '--without-x11' '--with-ptscotch=0' '--with-scalapack=0' '--without-mumps' '--with-imagemagick=0' '--with-python=0' '--without-boost' '--with-fftw' * phase-helpers.sh, line 681: Called __helpers_die 'econf failed' * isolated-functions.sh, line 112: Called die * The specific snippet of code: * die "$@" * * If you need support, post the output of `emerge --info '=sci-mathematics/petsc-3.13.1::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-mathematics/petsc-3.13.1::gentoo'`. * The complete build log is located at '/var/log/portage/sci-mathematics:petsc-3.13.1:20200512-015702.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-mathematics/petsc-3.13.1/temp/environment'. * Working directory: '/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1' * S: '/var/tmp/portage/sci-mathematics/petsc-3.13.1/work/petsc-3.13.1'