sci-libs:coinor-clp-1.17.6:20200509-165809.log

sci-libs:coinor-clp-1.17.6:20200509-165809.log (text/plain), 19.33 KB, created by Toralf Förster on 2020-05-09 17:25:29 UTC

 * Package:    sci-libs/coinor-clp-1.17.6
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking coinor-clp-1.17.6.tar.gz to /var/tmp/portage/sci-libs/coinor-clp-1.17.6/work
>>> Source unpacked in /var/tmp/portage/sci-libs/coinor-clp-1.17.6/work
>>> Preparing source in /var/tmp/portage/sci-libs/coinor-clp-1.17.6/work/Clp-releases-1.17.6/Clp ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-libs/coinor-clp-1.17.6/work/Clp-releases-1.17.6/Clp ...
 * econf: updating Clp-releases-1.17.6/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating Clp-releases-1.17.6/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating Clp-releases-1.17.6/Clp/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating Clp-releases-1.17.6/Clp/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --libdir=/usr/lib64 --enable-dependency-linking --with-coin-instdir=/var/tmp/portage/sci-libs/coinor-clp-1.17.6/image/usr --without-dot --without-glpk --without-amd --without-cholmod --without-metis --without-mumps
configure: loading site script /usr/share/config.site
checking build system type... x86_64-pc-linux-gnu
checking for svnversion... yes
checking whether we want to compile in debug mode... no
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ANSI C... none needed
configure: C compiler options are: -O2 -pipe -march=native  -fno-common   -DCLP_BUILD
checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
checking whether C++ compiler x86_64-pc-linux-gnu-g++ works... yes
configure: C++ compiler options are: -O2 -pipe -march=native  -fno-common   -DCLP_BUILD
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/lib/portage/python3.6/ebuild-helpers/xattr/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of x86_64-pc-linux-gnu-gcc... none
checking dependency style of x86_64-pc-linux-gnu-g++... none
checking whether to enable maintainer-specific portions of Makefiles... no
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checking for a sed that does not truncate output... /bin/sed
checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking how to recognise dependent libraries... pass_all
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
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checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
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checking for x86_64-pc-linux-gnu-lf95... no
checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
checking for objdir... .libs
checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar
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checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes
checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes
checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes
checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
configure: Build is "x86_64-pc-linux-gnu".
checking for dos2unix... dos2unix
checking if library version is set... 15:6:14
checking for x86_64-pc-linux-gnu-pkg-config... x86_64-pc-linux-gnu-pkg-config
checking pkg-config is at least version 0.16.0... yes
checking for COIN-OR package CoinUtils... yes: 2.9.11 
checking for COIN-OR package Osi... yes: 0.106.6 
checking for COIN-OR package OsiTests... yes: 0.106.6 
checking for COIN-OR package Sample... not given: Package 'coindatasample', required by 'virtual:world', not found
checking for COIN-OR package Netlib... yes: 1.2.6 
checking if user provides library for AMD... no
checking if user provides library for CHOLMOD... no
checking for COIN-OR package Glpk... skipping
checking for COIN-OR package Mumps... skipping
checking for COIN-OR package ASL... not given: Package 'coinasl', required by 'virtual:world', not found
checking cmath usability... yes
checking cmath presence... yes
checking for cmath... yes
checking cfloat usability... yes
checking cfloat presence... yes
checking for cfloat... yes
checking cieeefp usability... no
checking cieeefp presence... no
checking for cieeefp... no
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
checking whether this is a VPATH configuration... no
configure: configuring doxygen documentation options
checking for doxygen... no
checking for latex... no
checking for dot ... disabled
checking for doxygen doc'n for CoinUtils ... /usr/share/coin/doc/CoinUtils/doxydoc (tag)
checking for doxygen doc'n for Osi ... /usr/share/coin/doc/Osi/doxydoc (tag)
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: creating examples/Makefile
config.status: creating src/Makefile
config.status: creating src/OsiClp/Makefile
config.status: creating test/Makefile
config.status: creating clp.pc
config.status: creating clp-uninstalled.pc
config.status: creating osi-clp.pc
config.status: creating osi-clp-uninstalled.pc
config.status: creating doxydoc/doxygen.conf
config.status: creating src/config.h
config.status: creating src/config_clp.h
config.status: executing depfiles commands
configure: In case of trouble, first consult the troubleshooting page at https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting
configure: Configuration of Clp successful
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-libs/coinor-clp-1.17.6/work/Clp-releases-1.17.6/Clp ...
make -j1 all 
Making all in src
make[1]: Entering directory '/var/tmp/portage/sci-libs/coinor-clp-1.17.6/work/Clp-releases-1.17.6/Clp/src'
make  all-am
make[2]: Entering directory '/var/tmp/portage/sci-libs/coinor-clp-1.17.6/work/Clp-releases-1.17.6/Clp/src'
/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/usr/include/coin   -DCOIN_HAS_CLP     -O2 -pipe -march=native  -fno-common   -DCLP_BUILD -c -o ClpCholeskyBase.lo ClpCholeskyBase.cpp
mkdir .libs
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 x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I/usr/include/coin -DCOIN_HAS_CLP -O2 -pipe -march=native -fno-common -DCLP_BUILD -c ClpCholeskyDense.cpp  -fPIC -DPIC -o .libs/ClpCholeskyDense.o
/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/usr/include/coin   -DCOIN_HAS_CLP     -O2 -pipe -march=native  -fno-common   -DCLP_BUILD -c -o ClpConstraint.lo ClpConstraint.cpp
 x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I/usr/include/coin -DCOIN_HAS_CLP -O2 -pipe -march=native -fno-common -DCLP_BUILD -c ClpConstraint.cpp  -fPIC -DPIC -o .libs/ClpConstraint.o
/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/usr/include/coin   -DCOIN_HAS_CLP     -O2 -pipe -march=native  -fno-common   -DCLP_BUILD -c -o ClpConstraintLinear.lo ClpConstraintLinear.cpp
 x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I/usr/include/coin -DCOIN_HAS_CLP -O2 -pipe -march=native -fno-common -DCLP_BUILD -c ClpConstraintLinear.cpp  -fPIC -DPIC -o .libs/ClpConstraintLinear.o
/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/usr/include/coin   -DCOIN_HAS_CLP     -O2 -pipe -march=native  -fno-common   -DCLP_BUILD -c -o ClpConstraintQuadratic.lo ClpConstraintQuadratic.cpp
 x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I/usr/include/coin -DCOIN_HAS_CLP -O2 -pipe -march=native -fno-common -DCLP_BUILD -c ClpConstraintQuadratic.cpp  -fPIC -DPIC -o .libs/ClpConstraintQuadratic.o
/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/usr/include/coin   -DCOIN_HAS_CLP     -O2 -pipe -march=native  -fno-common   -DCLP_BUILD -c -o Clp_C_Interface.lo Clp_C_Interface.cpp
 x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I/usr/include/coin -DCOIN_HAS_CLP -O2 -pipe -march=native -fno-common -DCLP_BUILD -c Clp_C_Interface.cpp  -fPIC -DPIC -o .libs/Clp_C_Interface.o
/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/usr/include/coin   -DCOIN_HAS_CLP     -O2 -pipe -march=native  -fno-common   -DCLP_BUILD -c -o ClpDualRowDantzig.lo ClpDualRowDantzig.cpp
 x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I/usr/include/coin -DCOIN_HAS_CLP -O2 -pipe -march=native -fno-common -DCLP_BUILD -c ClpDualRowDantzig.cpp  -fPIC -DPIC -o .libs/ClpDualRowDantzig.o
/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/usr/include/coin   -DCOIN_HAS_CLP     -O2 -pipe -march=native  -fno-common   -DCLP_BUILD -c -o ClpDualRowPivot.lo ClpDualRowPivot.cpp
 x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I/usr/include/coin -DCOIN_HAS_CLP -O2 -pipe -march=native -fno-common -DCLP_BUILD -c ClpDualRowPivot.cpp  -fPIC -DPIC -o .libs/ClpDualRowPivot.o
/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/usr/include/coin   -DCOIN_HAS_CLP     -O2 -pipe -march=native  -fno-common   -DCLP_BUILD -c -o ClpDualRowSteepest.lo ClpDualRowSteepest.cpp
 x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I/usr/include/coin -DCOIN_HAS_CLP -O2 -pipe -march=native -fno-common -DCLP_BUILD -c ClpDualRowSteepest.cpp  -fPIC -DPIC -o .libs/ClpDualRowSteepest.o
/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/usr/include/coin   -DCOIN_HAS_CLP     -O2 -pipe -march=native  -fno-common   -DCLP_BUILD -c -o ClpDummyMatrix.lo ClpDummyMatrix.cpp
 x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I/usr/include/coin -DCOIN_HAS_CLP -O2 -pipe -march=native -fno-common -DCLP_BUILD -c ClpDummyMatrix.cpp  -fPIC -DPIC -o .libs/ClpDummyMatrix.o
/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/usr/include/coin   -DCOIN_HAS_CLP     -O2 -pipe -march=native  -fno-common   -DCLP_BUILD -c -o ClpDynamicExampleMatrix.lo ClpDynamicExampleMatrix.cpp
 x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I/usr/include/coin -DCOIN_HAS_CLP -O2 -pipe -march=native -fno-common -DCLP_BUILD -c ClpDynamicExampleMatrix.cpp  -fPIC -DPIC -o .libs/ClpDynamicExampleMatrix.o
/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/usr/include/coin   -DCOIN_HAS_CLP     -O2 -pipe -march=native  -fno-common   -DCLP_BUILD -c -o ClpDynamicMatrix.lo ClpDynamicMatrix.cpp
 x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I/usr/include/coin -DCOIN_HAS_CLP -O2 -pipe -march=native -fno-common -DCLP_BUILD -c ClpDynamicMatrix.cpp  -fPIC -DPIC -o .libs/ClpDynamicMatrix.o
/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/usr/include/coin   -DCOIN_HAS_CLP     -O2 -pipe -march=native  -fno-common   -DCLP_BUILD -c -o ClpEventHandler.lo ClpEventHandler.cpp
 x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I/usr/include/coin -DCOIN_HAS_CLP -O2 -pipe -march=native -fno-common -DCLP_BUILD -c ClpEventHandler.cpp  -fPIC -DPIC -o .libs/ClpEventHandler.o
/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I`echo .`  -I/usr/include/coin   -DCOIN_HAS_CLP     -O2 -pipe -march=native  -fno-common   -DCLP_BUILD -c -o ClpFactorization.lo ClpFactorization.cpp
 x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I/usr/include/coin -DCOIN_HAS_CLP -O2 -pipe -march=native -fno-common -DCLP_BUILD -c ClpFactorization.cpp  -fPIC -DPIC -o .libs/ClpFactorization.o
ClpFactorization.cpp: In member function 'int ClpFactorization::updateColumnForDebug(CoinIndexedVector*, CoinIndexedVector*, bool) const':
ClpFactorization.cpp:2974:38: error: 'double CoinFactorization::ftranCountInput_' is protected within this context
 2974 |   memcpy(save, &coinFactorizationA_->ftranCountInput_, sizeof(save));
      |                                      ^~~~~~~~~~~~~~~~
In file included from ClpFactorization.hpp:11,
                 from ClpFactorization.cpp:11:
/usr/include/coin/CoinFactorization.hpp:1395:18: note: declared protected here
 1395 |   mutable double ftranCountInput_;
      |                  ^~~~~~~~~~~~~~~~
ClpFactorization.cpp:2978:32: error: 'double CoinFactorization::ftranCountInput_' is protected within this context
 2978 |   memcpy(&coinFactorizationA_->ftranCountInput_, save, sizeof(save));
      |                                ^~~~~~~~~~~~~~~~
In file included from ClpFactorization.hpp:11,
                 from ClpFactorization.cpp:11:
/usr/include/coin/CoinFactorization.hpp:1395:18: note: declared protected here
 1395 |   mutable double ftranCountInput_;
      |                  ^~~~~~~~~~~~~~~~
ClpFactorization.cpp: In member function 'void ClpFactorization::updateTwoColumnsTranspose(CoinIndexedVector*, CoinIndexedVector*, CoinIndexedVector*) const':
ClpFactorization.cpp:3077:28: error: 'class CoinFactorization' has no member named 'updateTwoColumnsTranspose'; did you mean 'updateColumnTranspose'?
 3077 |       coinFactorizationA_->updateTwoColumnsTranspose(regionSparse,
      |                            ^~~~~~~~~~~~~~~~~~~~~~~~~
      |                            updateColumnTranspose
make[2]: *** [Makefile:962: ClpFactorization.lo] Error 1
make[2]: Leaving directory '/var/tmp/portage/sci-libs/coinor-clp-1.17.6/work/Clp-releases-1.17.6/Clp/src'
make[1]: *** [Makefile:714: all] Error 2
make[1]: Leaving directory '/var/tmp/portage/sci-libs/coinor-clp-1.17.6/work/Clp-releases-1.17.6/Clp/src'
make: *** [Makefile:520: all-recursive] Error 1
 * ERROR: sci-libs/coinor-clp-1.17.6::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-libs/coinor-clp-1.17.6::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-libs/coinor-clp-1.17.6::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-libs:coinor-clp-1.17.6:20200509-165809.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-libs/coinor-clp-1.17.6/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-libs/coinor-clp-1.17.6/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-libs/coinor-clp-1.17.6/work/Clp-releases-1.17.6/Clp'
 * S: '/var/tmp/portage/sci-libs/coinor-clp-1.17.6/work/Clp-releases-1.17.6/Clp'