log of emerge vtk

vtklog.txt (text/plain), 16.45 KB, created by alex.dorsch on 2020-05-06 20:57:16 UTC

[32;01m * [39;49;00mPackage:    sci-libs/vtk-8.2.0
[32;01m * [39;49;00mRepository: gentoo
[32;01m * [39;49;00mMaintainer: [e-mail]
[32;01m * [39;49;00mUSE:        X abi_x86_64 amd64 elibc_glibc kernel_linux python_single_target_python3_6 qt5 rendering userland_GNU
[32;01m * [39;49;00mFEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking VTK-8.2.0.tar.gz to /var/tmp/portage/sci-libs/vtk-8.2.0/work
>>> Source unpacked in /var/tmp/portage/sci-libs/vtk-8.2.0/work
>>> Preparing source in /var/tmp/portage/sci-libs/vtk-8.2.0/work/VTK-8.2.0 ...
 [32;01m*[0m Applying vtk-8.1.0-openmpi-4-compatibility.patch ...
[A[64C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Dropping bundled expat ...
[A[64C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Dropping bundled freetype ...
[A[64C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Dropping bundled hdf5 ...
[A[64C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Dropping bundled jpeg ...
[A[64C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Dropping bundled jsoncpp ...
[A[64C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Dropping bundled libharu ...
[A[64C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Dropping bundled libxml2 ...
[A[64C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Dropping bundled lz4 ...
[A[64C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Dropping bundled netcdf ...
[A[64C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Dropping bundled png ...
[A[64C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Dropping bundled tiff ...
[A[64C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Dropping bundled zlib ...
[A[64C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying vtk-8.1.0-openmpi-4-compatibility.patch ...
patching file ThirdParty/mpi4py/vtkmpi4py/src/lib-mpi/config/openmpi.h
Hunk #1 succeeded at 146 with fuzz 2 (offset 5 lines).
[A[64C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Hardcoded definition(s) removed in ThirdParty/libproj/vtklibproj/CMakeLists.txt:
 [32;01m*[0m    set (CMAKE_BUILD_TYPE Release)
 [32;01m*[0m Hardcoded definition(s) removed in ThirdParty/eigen/vtkeigen/CMakeLists.txt:
 [32;01m*[0m    set(CMAKE_BUILD_TYPE "Release")
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-libs/vtk-8.2.0/work/VTK-8.2.0 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/vtk-8.2.0/work/vtk-8.2.0_build"
cmake -C /var/tmp/portage/sci-libs/vtk-8.2.0/work/vtk-8.2.0_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -Wno-dev -DVTK_DIR=/var/tmp/portage/sci-libs/vtk-8.2.0/work/VTK-8.2.0 -DVTK_INSTALL_LIBRARY_DIR=lib64 -DVTK_INSTALL_PACKAGE_DIR=lib64/cmake/vtk-8.2 -DVTK_INSTALL_DOC_DIR=/usr/share/doc/vtk-8.2.0 -DVTK_DATA_ROOT=/usr/share/vtk/data -DVTK_CUSTOM_LIBRARY_SUFFIX= -DBUILD_SHARED_LIBS=ON -DVTK_USE_SYSTEM_AUTOBAHN=ON -DVTK_USE_SYSTEM_EXPAT=ON -DVTK_USE_SYSTEM_FREETYPE=ON -DVTK_USE_SYSTEM_FreeType=ON -DVTK_USE_SYSTEM_GL2PS=OFF -DVTK_USE_SYSTEM_HDF5=ON -DVTK_USE_SYSTEM_JPEG=ON -DVTK_USE_SYSTEM_LIBPROJ4=OFF -DVTK_USE_SYSTEM_LIBXML2=ON -DVTK_USE_SYSTEM_LibXml2=ON -DVTK_USE_SYSTEM_NETCDF=ON -DVTK_USE_SYSTEM_OGGTHEORA=ON -DVTK_USE_SYSTEM_PNG=ON -DVTK_USE_SYSTEM_TIFF=ON -DVTK_USE_SYSTEM_TWISTED=ON -DVTK_USE_SYSTEM_XDMF2=OFF -DVTK_USE_SYSTEM_XDMF3=OFF -DVTK_USE_SYSTEM_ZLIB=ON -DVTK_USE_SYSTEM_ZOPE=ON -DVTK_USE_SYSTEM_LIBRARIES=ON -DVTK_USE_SYSTEM_DIY2=OFF -DVTK_USE_GL2PS=ON -DVTK_USE_LARGE_DATA=ON -DVTK_USE_PARALLEL=ON -DVTK_EXTRA_COMPILER_WARNINGS=ON -DVTK_Group_StandAlone=ON -DBUILD_DOCUMENTATION=no -DBUILD_EXAMPLES=no -DBUILD_VTK_BUILD_ALL_MODULES_FOR_TESTS=off -DVTK_BUILD_ALL_MODULES=no -DUSE_DOCUMENTATION_HTML_HELP=no -DVTK_Group_Imaging=no -DVTK_Group_MPI=no -DVTK_Group_Rendering=yes -DVTK_Group_Tk=no -DVTK_Group_Views=no -DVTK_Group_Web=no -DVTK_WWW_DIR=/var/tmp/portage/sci-libs/vtk-8.2.0/image/ -DVTK_WRAP_JAVA=no -DVTK_WRAP_PYTHON=no -DVTK_WRAP_PYTHON_SIP=no -DVTK_WRAP_TCL=no -DVTK_USE_BOOST=no -DUSE_VTK_USE_BOOST=no -DModule_vtkInfovisBoost=no -DModule_vtkInfovisBoostGraphAlgorithms=no -DVTK_USE_ODBC=no -DModule_vtkIOODBC=no -DVTK_USE_OFFSCREEN=no -DVTK_OPENGL_HAS_OSMESA=no -DVTK_USE_OGGTHEORA_ENCODER=no -DVTK_USE_NVCONTROL=no -DModule_vtkFiltersStatisticsGnuR=no -DVTK_USE_X=yes -DVTK_USE_FFMPEG_ENCODER=no -DModule_vtkIOGDAL=no -DModule_vtkIOGeoJSON=no -DModule_vtkIOXdmf2=no -DBUILD_TESTING=no -DVTK_USE_COCOA=no -DVTK_SMP_IMPLEMENTATION_TYPE=Sequential -DVTK_USE_QVTK=ON -DVTK_USE_QVTK_OPENGL=ON -DVTK_USE_QVTK_QTOPENGL=ON -DQT_WRAP_CPP=ON -DQT_WRAP_UI=ON -DVTK_INSTALL_QT_DIR=lib64/qt5/plugins/designer -DDESIRED_QT_VERSION=5 -DVTK_QT_VERSION=5 -DQT_MOC_EXECUTABLE=/usr/lib64/qt5/bin/moc -DQT_UIC_EXECUTABLE=/usr/lib64/qt5/bin/uic -DQT_INCLUDE_DIR=/usr/include/qt5 -DQT_QMAKE_EXECUTABLE=/usr/lib64/qt5/bin/qmake -DVTK_Group_Qt:BOOL=ON -DCMAKE_DISABLE_FIND_PACKAGE_Qt5WebKitWidgets=ON -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-libs/vtk-8.2.0/work/vtk-8.2.0_build/gentoo_toolchain.cmake  /var/tmp/portage/sci-libs/vtk-8.2.0/work/VTK-8.2.0
loading initial cache file /var/tmp/portage/sci-libs/vtk-8.2.0/work/vtk-8.2.0_build/gentoo_common_config.cmake
-- The C compiler identification is GNU 9.3.0
-- The CXX compiler identification is GNU 9.3.0
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc - works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ - works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test HAVE_GCC_ERROR_RETURN_TYPE
-- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Performing Test VTK_UNDEFINED_SYMBOLS_ALLOWED - Success
-- Performing Test Support for 64 bit file systems
-- Performing Test Support for 64 bit file systems - Success
-- Group StandAlone modules: vtkChartsCore;vtkCommonComputationalGeometry;vtkCommonCore;vtkCommonDataModel;vtkCommonExecutionModel;vtkCommonMisc;vtkCommonSystem;vtkCommonTransforms;vtkDomainsChemistry;vtkFiltersAMR;vtkFiltersCore;vtkFiltersExtraction;vtkFiltersFlowPaths;vtkFiltersGeneral;vtkFiltersGeneric;vtkFiltersGeometry;vtkFiltersHybrid;vtkFiltersHyperTree;vtkFiltersImaging;vtkFiltersModeling;vtkFiltersParallel;vtkFiltersParallelImaging;vtkFiltersPoints;vtkFiltersProgrammable;vtkFiltersSMP;vtkFiltersSelection;vtkFiltersSources;vtkFiltersStatistics;vtkFiltersTexture;vtkFiltersTopology;vtkFiltersVerdict;vtkIOAMR;vtkIOAsynchronous;vtkIOCityGML;vtkIOCore;vtkIOEnSight;vtkIOExodus;vtkIOGeometry;vtkIOImage;vtkIOImport;vtkIOInfovis;vtkIOLSDyna;vtkIOLegacy;vtkIOMINC;vtkIOMovie;vtkIONetCDF;vtkIOPLY;vtkIOParallel;vtkIOParallelXML;vtkIOSQL;vtkIOSegY;vtkIOTecplotTable;vtkIOVeraOut;vtkIOVideo;vtkIOXML;vtkIOXMLParser;vtkImagingColor;vtkImagingCore;vtkImagingFourier;vtkImagingGeneral;vtkImagingHybrid;vtkImagingMath;vtkImagingMorphological;vtkImagingSources;vtkImagingStatistics;vtkImagingStencil;vtkInfovisCore;vtkInfovisLayout;vtkParallelCore
-- Group MPI modules: vtkDomainsParallelChemistry;vtkFiltersParallelDIY2;vtkFiltersParallelGeometry;vtkFiltersParallelMPI;vtkFiltersParallelVerdict;vtkIOMPIImage;vtkIOMPIParallel;vtkIOParallelNetCDF;vtkParallelMPI;vtkdiy2
-- Group Imaging modules: vtkFiltersImaging;vtkImagingColor;vtkImagingFourier;vtkImagingGeneral;vtkImagingHybrid;vtkImagingMath;vtkImagingMorphological;vtkImagingSources;vtkImagingStatistics;vtkImagingStencil;vtkInteractionImage;vtkRenderingImage
-- Group Qt modules: vtkGUISupportQt;vtkGUISupportQtSQL;vtkRenderingQt;vtkViewsQt
-- Group Rendering modules: vtkGeovisCore;vtkIOExport;vtkIOExportPDF;vtkInteractionImage;vtkInteractionStyle;vtkInteractionWidgets;vtkRenderingAnnotation;vtkRenderingContext2D;vtkRenderingCore;vtkRenderingFreeType;vtkRenderingImage;vtkRenderingLOD;vtkRenderingLabel;vtkRenderingVolume;vtkViewsContext2D;vtkViewsCore;vtkViewsInfovis
-- Group Tk modules: vtkRenderingTk
-- Group Views modules: vtkViewsContext2D;vtkViewsGeovis
-- Group Web modules: vtkWebCore;vtkWebPython;vtkWebGLExporter
-- Setting rendering backend to 'OpenGL2' as none was specified.
-- Backend OpenGL2 modules: vtkDomainsChemistryOpenGL2;vtkIOExportOpenGL2;vtkImagingOpenGL2;vtkRenderingContextOpenGL2;vtkRenderingGL2PSOpenGL2;vtkRenderingLICOpenGL2;vtkRenderingOpenGL2;vtkRenderingOpenVR;vtkRenderingVolumeOpenGL2
-- Enabling modules for OpenGL2.
-- Checking whether header cstdio is available
-- Checking whether header cstdio is available - yes
-- Checking for Large File Support
-- Checking for Large File Support - yes
-- Checking whether C++ compiler has 'long long'
-- Checking whether C++ compiler has 'long long' - yes
-- Checking whether C++ compiler has '__int64'
-- Checking whether C++ compiler has '__int64' - no
-- Checking whether wstring is available
-- Checking whether wstring is available - yes
-- Checking whether C compiler has ptrdiff_t in stddef.h
-- Checking whether C compiler has ptrdiff_t in stddef.h - yes
-- Checking whether C compiler has ssize_t in unistd.h
-- Checking whether C compiler has ssize_t in unistd.h - yes
-- Checking whether C compiler has clock_gettime
-- Checking whether C compiler has clock_gettime - yes
-- Checking whether CXX compiler has setenv
-- Checking whether CXX compiler has setenv - yes
-- Checking whether CXX compiler has unsetenv
-- Checking whether CXX compiler has unsetenv - yes
-- Checking whether CXX compiler has environ in stdlib.h
-- Checking whether CXX compiler has environ in stdlib.h - no
-- Checking whether CXX compiler has utimes
-- Checking whether CXX compiler has utimes - yes
-- Checking whether CXX compiler has utimensat
-- Checking whether CXX compiler has utimensat - yes
-- Checking whether CXX compiler struct stat has st_mtim member
-- Checking whether CXX compiler struct stat has st_mtim member - yes
-- Checking whether CXX compiler struct stat has st_mtimespec member
-- Checking whether CXX compiler struct stat has st_mtimespec member - no
-- Looking for include files sys/types.h, ifaddrs.h
-- Looking for include files sys/types.h, ifaddrs.h - found
-- Checking whether CXX compiler has rlimit64
-- Checking whether CXX compiler has rlimit64 - yes
-- Checking whether CXX compiler has atol
-- Checking whether CXX compiler has atol - yes
-- Checking whether CXX compiler has atoll
-- Checking whether CXX compiler has atoll - yes
-- Checking whether CXX compiler has _atoi64
-- Checking whether CXX compiler has _atoi64 - no
-- Looking for C++ include execinfo.h
-- Looking for C++ include execinfo.h - found
-- Checking whether backtrace works with this C++ compiler
-- Checking whether backtrace works with this C++ compiler - yes
-- Looking for C++ include dlfcn.h
-- Looking for C++ include dlfcn.h - found
-- Checking whether dladdr works with this C++ compiler
-- Checking whether dladdr works with this C++ compiler - yes
-- Looking for C++ include cxxabi.h
-- Looking for C++ include cxxabi.h - found
-- Checking whether cxxabi works with this C++ compiler
-- Checking whether cxxabi works with this C++ compiler - yes
-- Checking whether CXX compiler has getloadavg
-- Checking whether CXX compiler has getloadavg - yes
-- Checking whether <ext/stdio_filebuf.h> is available
-- Checking whether <ext/stdio_filebuf.h> is available - yes
-- Checking for builtin __sync_add_and_fetch
-- Checking for builtin __sync_add_and_fetch -- success
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Searching 16 bit integer - Using unsigned short
-- Check if the system is big endian - little endian
-- Performing Test VTK_HAS_STD_ISNAN
-- Performing Test VTK_HAS_STD_ISNAN - Success
-- Performing Test VTK_HAS_STD_ISINF
-- Performing Test VTK_HAS_STD_ISINF - Success
-- Performing Test VTK_HAS_STD_ISFINITE
-- Performing Test VTK_HAS_STD_ISFINITE - Success
-- Looking for isnan
-- Looking for isnan - found
-- Looking for isinf
-- Looking for isinf - found
-- Looking for isfinite
-- Looking for isfinite - found
-- Looking for finite
-- Looking for finite - found
-- Looking for fenv.h
-- Looking for fenv.h - found
-- Looking for feenableexcept
-- Looking for feenableexcept - found
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Looking for getsockname in socket
-- Looking for getsockname in socket - not found
-- Checking for getsockname with socklen_t
-- Checking for getsockname with socklen_t -- 1
-- Looking for SO_REUSEADDR
-- Looking for SO_REUSEADDR - found
-- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") 
-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.11") 
-- Found Freetype: /usr/lib64/libfreetype.so (found version "2.10.1") 
-- Found double-conversion: /usr/include/double-conversion  
-- Found LZ4: /usr/lib64/liblz4.so  
-- Found LZMA: /usr/lib64/liblzma.so  
-- Found EXPAT: /usr/lib64/libexpat.so (found version "2.2.9") 
-- Found GLEW: /usr/include  
-- Found OpenGL: /usr/lib64/libOpenGL.so   
-- Found X11: /usr/include   
-- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so
-- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so - found
-- Looking for gethostbyname
-- Looking for gethostbyname - found
-- Looking for connect
-- Looking for connect - found
-- Looking for remove
-- Looking for remove - found
-- Looking for shmat
-- Looking for shmat - found
-- Looking for IceConnectionNumber in ICE
-- Looking for IceConnectionNumber in ICE - found
-- Found SQLite3: /usr/lib64/libsqlite3.so  
-- Found JPEG: /usr/lib64/libjpeg.so (found version "62") 
-- Found PNG: /usr/lib64/libpng.so (found version "1.6.37+apng") 
-- Found TIFF: /usr/lib64/libtiff.so (found version "4.1.0") 
CMake Error at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:164 (message):
  Could NOT find LibPROJ (missing: LibPROJ_LIBRARY LibPROJ_INCLUDE_DIR)
Call Stack (most recent call first):
  /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:445 (_FPHSA_FAILURE_MESSAGE)
  CMake/FindLibPROJ.cmake:43 (find_package_handle_standard_args)
  CMake/vtkModuleMacros.cmake:891 (find_package)
  ThirdParty/libproj/CMakeLists.txt:1 (vtk_module_third_party)


-- Configuring incomplete, errors occurred!
See also "/var/tmp/portage/sci-libs/vtk-8.2.0/work/vtk-8.2.0_build/CMakeFiles/CMakeOutput.log".
See also "/var/tmp/portage/sci-libs/vtk-8.2.0/work/vtk-8.2.0_build/CMakeFiles/CMakeError.log".
 [31;01m*[0m ERROR: sci-libs/vtk-8.2.0::gentoo failed (configure phase):
 [31;01m*[0m   cmake failed
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m     ebuild.sh, line  125:  Called src_configure
 [31;01m*[0m   environment, line 5108:  Called cmake-utils_src_configure
 [31;01m*[0m   environment, line 1487:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m       "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed";
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of `emerge --info '=sci-libs/vtk-8.2.0::gentoo'`,
 [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-libs/vtk-8.2.0::gentoo'`.
!!! When you file a bug report, please include the following information:
GENTOO_VM=  CLASSPATH="" JAVA_HOME="/etc/java-config-2/current-system-vm"
JAVACFLAGS="" COMPILER=""
and of course, the output of emerge --info =vtk-8.2.0
 [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-libs/vtk-8.2.0/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-libs/vtk-8.2.0/temp/environment'.
 [31;01m*[0m Working directory: '/var/tmp/portage/sci-libs/vtk-8.2.0/work/vtk-8.2.0_build'
 [31;01m*[0m S: '/var/tmp/portage/sci-libs/vtk-8.2.0/work/VTK-8.2.0'