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Gentoo's Bugzilla – Attachment 636574 Details for
Bug 721196
sci-libs/vtk-8.2.0 - cmake failed
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log of emerge vtk
vtklog.txt (text/plain), 16.45 KB, created by
alex.dorsch
on 2020-05-06 20:57:16 UTC
(
hide
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Description:
log of emerge vtk
Filename:
MIME Type:
Creator:
alex.dorsch
Created:
2020-05-06 20:57:16 UTC
Size:
16.45 KB
patch
obsolete
>[32;01m * [39;49;00mPackage: sci-libs/vtk-8.2.0 >[32;01m * [39;49;00mRepository: gentoo >[32;01m * [39;49;00mMaintainer: sci@gentoo.org >[32;01m * [39;49;00mUSE: X abi_x86_64 amd64 elibc_glibc kernel_linux python_single_target_python3_6 qt5 rendering userland_GNU >[32;01m * [39;49;00mFEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>>> Unpacking source... >>>> Unpacking VTK-8.2.0.tar.gz to /var/tmp/portage/sci-libs/vtk-8.2.0/work >>>> Source unpacked in /var/tmp/portage/sci-libs/vtk-8.2.0/work >>>> Preparing source in /var/tmp/portage/sci-libs/vtk-8.2.0/work/VTK-8.2.0 ... > [32;01m*[0m Applying vtk-8.1.0-openmpi-4-compatibility.patch ... >[A[64C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Dropping bundled expat ... >[A[64C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Dropping bundled freetype ... >[A[64C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Dropping bundled hdf5 ... >[A[64C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Dropping bundled jpeg ... >[A[64C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Dropping bundled jsoncpp ... >[A[64C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Dropping bundled libharu ... >[A[64C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Dropping bundled libxml2 ... >[A[64C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Dropping bundled lz4 ... >[A[64C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Dropping bundled netcdf ... >[A[64C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Dropping bundled png ... >[A[64C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Dropping bundled tiff ... >[A[64C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Dropping bundled zlib ... >[A[64C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying vtk-8.1.0-openmpi-4-compatibility.patch ... >patching file ThirdParty/mpi4py/vtkmpi4py/src/lib-mpi/config/openmpi.h >Hunk #1 succeeded at 146 with fuzz 2 (offset 5 lines). >[A[64C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Hardcoded definition(s) removed in ThirdParty/libproj/vtklibproj/CMakeLists.txt: > [32;01m*[0m set (CMAKE_BUILD_TYPE Release) > [32;01m*[0m Hardcoded definition(s) removed in ThirdParty/eigen/vtkeigen/CMakeLists.txt: > [32;01m*[0m set(CMAKE_BUILD_TYPE "Release") >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-libs/vtk-8.2.0/work/VTK-8.2.0 ... >>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/vtk-8.2.0/work/vtk-8.2.0_build" >cmake -C /var/tmp/portage/sci-libs/vtk-8.2.0/work/vtk-8.2.0_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -Wno-dev -DVTK_DIR=/var/tmp/portage/sci-libs/vtk-8.2.0/work/VTK-8.2.0 -DVTK_INSTALL_LIBRARY_DIR=lib64 -DVTK_INSTALL_PACKAGE_DIR=lib64/cmake/vtk-8.2 -DVTK_INSTALL_DOC_DIR=/usr/share/doc/vtk-8.2.0 -DVTK_DATA_ROOT=/usr/share/vtk/data -DVTK_CUSTOM_LIBRARY_SUFFIX= -DBUILD_SHARED_LIBS=ON -DVTK_USE_SYSTEM_AUTOBAHN=ON -DVTK_USE_SYSTEM_EXPAT=ON -DVTK_USE_SYSTEM_FREETYPE=ON -DVTK_USE_SYSTEM_FreeType=ON -DVTK_USE_SYSTEM_GL2PS=OFF -DVTK_USE_SYSTEM_HDF5=ON -DVTK_USE_SYSTEM_JPEG=ON -DVTK_USE_SYSTEM_LIBPROJ4=OFF -DVTK_USE_SYSTEM_LIBXML2=ON -DVTK_USE_SYSTEM_LibXml2=ON -DVTK_USE_SYSTEM_NETCDF=ON -DVTK_USE_SYSTEM_OGGTHEORA=ON -DVTK_USE_SYSTEM_PNG=ON -DVTK_USE_SYSTEM_TIFF=ON -DVTK_USE_SYSTEM_TWISTED=ON -DVTK_USE_SYSTEM_XDMF2=OFF -DVTK_USE_SYSTEM_XDMF3=OFF -DVTK_USE_SYSTEM_ZLIB=ON -DVTK_USE_SYSTEM_ZOPE=ON -DVTK_USE_SYSTEM_LIBRARIES=ON -DVTK_USE_SYSTEM_DIY2=OFF -DVTK_USE_GL2PS=ON -DVTK_USE_LARGE_DATA=ON -DVTK_USE_PARALLEL=ON -DVTK_EXTRA_COMPILER_WARNINGS=ON -DVTK_Group_StandAlone=ON -DBUILD_DOCUMENTATION=no -DBUILD_EXAMPLES=no -DBUILD_VTK_BUILD_ALL_MODULES_FOR_TESTS=off -DVTK_BUILD_ALL_MODULES=no -DUSE_DOCUMENTATION_HTML_HELP=no -DVTK_Group_Imaging=no -DVTK_Group_MPI=no -DVTK_Group_Rendering=yes -DVTK_Group_Tk=no -DVTK_Group_Views=no -DVTK_Group_Web=no -DVTK_WWW_DIR=/var/tmp/portage/sci-libs/vtk-8.2.0/image/ -DVTK_WRAP_JAVA=no -DVTK_WRAP_PYTHON=no -DVTK_WRAP_PYTHON_SIP=no -DVTK_WRAP_TCL=no -DVTK_USE_BOOST=no -DUSE_VTK_USE_BOOST=no -DModule_vtkInfovisBoost=no -DModule_vtkInfovisBoostGraphAlgorithms=no -DVTK_USE_ODBC=no -DModule_vtkIOODBC=no -DVTK_USE_OFFSCREEN=no -DVTK_OPENGL_HAS_OSMESA=no -DVTK_USE_OGGTHEORA_ENCODER=no -DVTK_USE_NVCONTROL=no -DModule_vtkFiltersStatisticsGnuR=no -DVTK_USE_X=yes -DVTK_USE_FFMPEG_ENCODER=no -DModule_vtkIOGDAL=no -DModule_vtkIOGeoJSON=no -DModule_vtkIOXdmf2=no -DBUILD_TESTING=no -DVTK_USE_COCOA=no -DVTK_SMP_IMPLEMENTATION_TYPE=Sequential -DVTK_USE_QVTK=ON -DVTK_USE_QVTK_OPENGL=ON -DVTK_USE_QVTK_QTOPENGL=ON -DQT_WRAP_CPP=ON -DQT_WRAP_UI=ON -DVTK_INSTALL_QT_DIR=lib64/qt5/plugins/designer -DDESIRED_QT_VERSION=5 -DVTK_QT_VERSION=5 -DQT_MOC_EXECUTABLE=/usr/lib64/qt5/bin/moc -DQT_UIC_EXECUTABLE=/usr/lib64/qt5/bin/uic -DQT_INCLUDE_DIR=/usr/include/qt5 -DQT_QMAKE_EXECUTABLE=/usr/lib64/qt5/bin/qmake -DVTK_Group_Qt:BOOL=ON -DCMAKE_DISABLE_FIND_PACKAGE_Qt5WebKitWidgets=ON -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-libs/vtk-8.2.0/work/vtk-8.2.0_build/gentoo_toolchain.cmake /var/tmp/portage/sci-libs/vtk-8.2.0/work/VTK-8.2.0 >loading initial cache file /var/tmp/portage/sci-libs/vtk-8.2.0/work/vtk-8.2.0_build/gentoo_common_config.cmake >-- The C compiler identification is GNU 9.3.0 >-- The CXX compiler identification is GNU 9.3.0 >-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc >-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc - works >-- Detecting C compiler ABI info >-- Detecting C compiler ABI info - done >-- Detecting C compile features >-- Detecting C compile features - done >-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ >-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ - works >-- Detecting CXX compiler ABI info >-- Detecting CXX compiler ABI info - done >-- Detecting CXX compile features >-- Detecting CXX compile features - done >-- Performing Test HAVE_GCC_ERROR_RETURN_TYPE >-- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success >-- Looking for pthread.h >-- Looking for pthread.h - found >-- Performing Test CMAKE_HAVE_LIBC_PTHREAD >-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed >-- Looking for pthread_create in pthreads >-- Looking for pthread_create in pthreads - not found >-- Looking for pthread_create in pthread >-- Looking for pthread_create in pthread - found >-- Found Threads: TRUE >-- Performing Test VTK_UNDEFINED_SYMBOLS_ALLOWED - Success >-- Performing Test Support for 64 bit file systems >-- Performing Test Support for 64 bit file systems - Success >-- Group StandAlone modules: vtkChartsCore;vtkCommonComputationalGeometry;vtkCommonCore;vtkCommonDataModel;vtkCommonExecutionModel;vtkCommonMisc;vtkCommonSystem;vtkCommonTransforms;vtkDomainsChemistry;vtkFiltersAMR;vtkFiltersCore;vtkFiltersExtraction;vtkFiltersFlowPaths;vtkFiltersGeneral;vtkFiltersGeneric;vtkFiltersGeometry;vtkFiltersHybrid;vtkFiltersHyperTree;vtkFiltersImaging;vtkFiltersModeling;vtkFiltersParallel;vtkFiltersParallelImaging;vtkFiltersPoints;vtkFiltersProgrammable;vtkFiltersSMP;vtkFiltersSelection;vtkFiltersSources;vtkFiltersStatistics;vtkFiltersTexture;vtkFiltersTopology;vtkFiltersVerdict;vtkIOAMR;vtkIOAsynchronous;vtkIOCityGML;vtkIOCore;vtkIOEnSight;vtkIOExodus;vtkIOGeometry;vtkIOImage;vtkIOImport;vtkIOInfovis;vtkIOLSDyna;vtkIOLegacy;vtkIOMINC;vtkIOMovie;vtkIONetCDF;vtkIOPLY;vtkIOParallel;vtkIOParallelXML;vtkIOSQL;vtkIOSegY;vtkIOTecplotTable;vtkIOVeraOut;vtkIOVideo;vtkIOXML;vtkIOXMLParser;vtkImagingColor;vtkImagingCore;vtkImagingFourier;vtkImagingGeneral;vtkImagingHybrid;vtkImagingMath;vtkImagingMorphological;vtkImagingSources;vtkImagingStatistics;vtkImagingStencil;vtkInfovisCore;vtkInfovisLayout;vtkParallelCore >-- Group MPI modules: vtkDomainsParallelChemistry;vtkFiltersParallelDIY2;vtkFiltersParallelGeometry;vtkFiltersParallelMPI;vtkFiltersParallelVerdict;vtkIOMPIImage;vtkIOMPIParallel;vtkIOParallelNetCDF;vtkParallelMPI;vtkdiy2 >-- Group Imaging modules: vtkFiltersImaging;vtkImagingColor;vtkImagingFourier;vtkImagingGeneral;vtkImagingHybrid;vtkImagingMath;vtkImagingMorphological;vtkImagingSources;vtkImagingStatistics;vtkImagingStencil;vtkInteractionImage;vtkRenderingImage >-- Group Qt modules: vtkGUISupportQt;vtkGUISupportQtSQL;vtkRenderingQt;vtkViewsQt >-- Group Rendering modules: vtkGeovisCore;vtkIOExport;vtkIOExportPDF;vtkInteractionImage;vtkInteractionStyle;vtkInteractionWidgets;vtkRenderingAnnotation;vtkRenderingContext2D;vtkRenderingCore;vtkRenderingFreeType;vtkRenderingImage;vtkRenderingLOD;vtkRenderingLabel;vtkRenderingVolume;vtkViewsContext2D;vtkViewsCore;vtkViewsInfovis >-- Group Tk modules: vtkRenderingTk >-- Group Views modules: vtkViewsContext2D;vtkViewsGeovis >-- Group Web modules: vtkWebCore;vtkWebPython;vtkWebGLExporter >-- Setting rendering backend to 'OpenGL2' as none was specified. >-- Backend OpenGL2 modules: vtkDomainsChemistryOpenGL2;vtkIOExportOpenGL2;vtkImagingOpenGL2;vtkRenderingContextOpenGL2;vtkRenderingGL2PSOpenGL2;vtkRenderingLICOpenGL2;vtkRenderingOpenGL2;vtkRenderingOpenVR;vtkRenderingVolumeOpenGL2 >-- Enabling modules for OpenGL2. >-- Checking whether header cstdio is available >-- Checking whether header cstdio is available - yes >-- Checking for Large File Support >-- Checking for Large File Support - yes >-- Checking whether C++ compiler has 'long long' >-- Checking whether C++ compiler has 'long long' - yes >-- Checking whether C++ compiler has '__int64' >-- Checking whether C++ compiler has '__int64' - no >-- Checking whether wstring is available >-- Checking whether wstring is available - yes >-- Checking whether C compiler has ptrdiff_t in stddef.h >-- Checking whether C compiler has ptrdiff_t in stddef.h - yes >-- Checking whether C compiler has ssize_t in unistd.h >-- Checking whether C compiler has ssize_t in unistd.h - yes >-- Checking whether C compiler has clock_gettime >-- Checking whether C compiler has clock_gettime - yes >-- Checking whether CXX compiler has setenv >-- Checking whether CXX compiler has setenv - yes >-- Checking whether CXX compiler has unsetenv >-- Checking whether CXX compiler has unsetenv - yes >-- Checking whether CXX compiler has environ in stdlib.h >-- Checking whether CXX compiler has environ in stdlib.h - no >-- Checking whether CXX compiler has utimes >-- Checking whether CXX compiler has utimes - yes >-- Checking whether CXX compiler has utimensat >-- Checking whether CXX compiler has utimensat - yes >-- Checking whether CXX compiler struct stat has st_mtim member >-- Checking whether CXX compiler struct stat has st_mtim member - yes >-- Checking whether CXX compiler struct stat has st_mtimespec member >-- Checking whether CXX compiler struct stat has st_mtimespec member - no >-- Looking for include files sys/types.h, ifaddrs.h >-- Looking for include files sys/types.h, ifaddrs.h - found >-- Checking whether CXX compiler has rlimit64 >-- Checking whether CXX compiler has rlimit64 - yes >-- Checking whether CXX compiler has atol >-- Checking whether CXX compiler has atol - yes >-- Checking whether CXX compiler has atoll >-- Checking whether CXX compiler has atoll - yes >-- Checking whether CXX compiler has _atoi64 >-- Checking whether CXX compiler has _atoi64 - no >-- Looking for C++ include execinfo.h >-- Looking for C++ include execinfo.h - found >-- Checking whether backtrace works with this C++ compiler >-- Checking whether backtrace works with this C++ compiler - yes >-- Looking for C++ include dlfcn.h >-- Looking for C++ include dlfcn.h - found >-- Checking whether dladdr works with this C++ compiler >-- Checking whether dladdr works with this C++ compiler - yes >-- Looking for C++ include cxxabi.h >-- Looking for C++ include cxxabi.h - found >-- Checking whether cxxabi works with this C++ compiler >-- Checking whether cxxabi works with this C++ compiler - yes >-- Checking whether CXX compiler has getloadavg >-- Checking whether CXX compiler has getloadavg - yes >-- Checking whether <ext/stdio_filebuf.h> is available >-- Checking whether <ext/stdio_filebuf.h> is available - yes >-- Checking for builtin __sync_add_and_fetch >-- Checking for builtin __sync_add_and_fetch -- success >-- Check if the system is big endian >-- Searching 16 bit integer >-- Looking for sys/types.h >-- Looking for sys/types.h - found >-- Looking for stdint.h >-- Looking for stdint.h - found >-- Looking for stddef.h >-- Looking for stddef.h - found >-- Check size of unsigned short >-- Check size of unsigned short - done >-- Searching 16 bit integer - Using unsigned short >-- Check if the system is big endian - little endian >-- Performing Test VTK_HAS_STD_ISNAN >-- Performing Test VTK_HAS_STD_ISNAN - Success >-- Performing Test VTK_HAS_STD_ISINF >-- Performing Test VTK_HAS_STD_ISINF - Success >-- Performing Test VTK_HAS_STD_ISFINITE >-- Performing Test VTK_HAS_STD_ISFINITE - Success >-- Looking for isnan >-- Looking for isnan - found >-- Looking for isinf >-- Looking for isinf - found >-- Looking for isfinite >-- Looking for isfinite - found >-- Looking for finite >-- Looking for finite - found >-- Looking for fenv.h >-- Looking for fenv.h - found >-- Looking for feenableexcept >-- Looking for feenableexcept - found >-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY >-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success >-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY >-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success >-- Performing Test COMPILER_HAS_DEPRECATED_ATTR >-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success >-- Looking for getsockname in socket >-- Looking for getsockname in socket - not found >-- Checking for getsockname with socklen_t >-- Checking for getsockname with socklen_t -- 1 >-- Looking for SO_REUSEADDR >-- Looking for SO_REUSEADDR - found >-- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") >-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.11") >-- Found Freetype: /usr/lib64/libfreetype.so (found version "2.10.1") >-- Found double-conversion: /usr/include/double-conversion >-- Found LZ4: /usr/lib64/liblz4.so >-- Found LZMA: /usr/lib64/liblzma.so >-- Found EXPAT: /usr/lib64/libexpat.so (found version "2.2.9") >-- Found GLEW: /usr/include >-- Found OpenGL: /usr/lib64/libOpenGL.so >-- Found X11: /usr/include >-- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so >-- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so - found >-- Looking for gethostbyname >-- Looking for gethostbyname - found >-- Looking for connect >-- Looking for connect - found >-- Looking for remove >-- Looking for remove - found >-- Looking for shmat >-- Looking for shmat - found >-- Looking for IceConnectionNumber in ICE >-- Looking for IceConnectionNumber in ICE - found >-- Found SQLite3: /usr/lib64/libsqlite3.so >-- Found JPEG: /usr/lib64/libjpeg.so (found version "62") >-- Found PNG: /usr/lib64/libpng.so (found version "1.6.37+apng") >-- Found TIFF: /usr/lib64/libtiff.so (found version "4.1.0") >CMake Error at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:164 (message): > Could NOT find LibPROJ (missing: LibPROJ_LIBRARY LibPROJ_INCLUDE_DIR) >Call Stack (most recent call first): > /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:445 (_FPHSA_FAILURE_MESSAGE) > CMake/FindLibPROJ.cmake:43 (find_package_handle_standard_args) > CMake/vtkModuleMacros.cmake:891 (find_package) > ThirdParty/libproj/CMakeLists.txt:1 (vtk_module_third_party) > > >-- Configuring incomplete, errors occurred! >See also "/var/tmp/portage/sci-libs/vtk-8.2.0/work/vtk-8.2.0_build/CMakeFiles/CMakeOutput.log". >See also "/var/tmp/portage/sci-libs/vtk-8.2.0/work/vtk-8.2.0_build/CMakeFiles/CMakeError.log". > [31;01m*[0m ERROR: sci-libs/vtk-8.2.0::gentoo failed (configure phase): > [31;01m*[0m cmake failed > [31;01m*[0m > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 125: Called src_configure > [31;01m*[0m environment, line 5108: Called cmake-utils_src_configure > [31;01m*[0m environment, line 1487: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed"; > [31;01m*[0m > [31;01m*[0m If you need support, post the output of `emerge --info '=sci-libs/vtk-8.2.0::gentoo'`, > [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-libs/vtk-8.2.0::gentoo'`. >!!! When you file a bug report, please include the following information: >GENTOO_VM= CLASSPATH="" JAVA_HOME="/etc/java-config-2/current-system-vm" >JAVACFLAGS="" COMPILER="" >and of course, the output of emerge --info =vtk-8.2.0 > [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-libs/vtk-8.2.0/temp/build.log'. > [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-libs/vtk-8.2.0/temp/environment'. > [31;01m*[0m Working directory: '/var/tmp/portage/sci-libs/vtk-8.2.0/work/vtk-8.2.0_build' > [31;01m*[0m S: '/var/tmp/portage/sci-libs/vtk-8.2.0/work/VTK-8.2.0'
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bug 721196
: 636574