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Gentoo's Bugzilla – Attachment 633584 Details for
Bug 718056
=dev-lang/R-3.6.3-r1: test failure in reg-packages.R
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partial-build.log
partial-build.log (text/plain), 134.07 KB, created by
Michael Orlitzky
on 2020-04-18 14:07:34 UTC
(
hide
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Description:
partial-build.log
Filename:
MIME Type:
Creator:
Michael Orlitzky
Created:
2020-04-18 14:07:34 UTC
Size:
134.07 KB
patch
obsolete
>make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpGK9kY8/R.INSTALL15701c9ec0a6/spatial/src' >installing to /var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/library/spatial/libs >** R >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >** building package indices >** testing if installed package can be loaded >* DONE (spatial) >* installing *source* package âKernSmoothâ ... >** package âKernSmoothâ successfully unpacked and MD5 sums checked >** using non-staged installation >** libs >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpqyaEl9/R.INSTALL15682cb491ba/KernSmooth/src' >x86_64-pc-linux-gnu-gfortran -fno-optimize-sibling-calls -fpic -O2 -pipe -c blkest.f -o blkest.o >x86_64-pc-linux-gnu-gfortran -fno-optimize-sibling-calls -fpic -O2 -pipe -c cp.f -o cp.o >x86_64-pc-linux-gnu-gfortran -fno-optimize-sibling-calls -fpic -O2 -pipe -c dgedi.f -o dgedi.o >x86_64-pc-linux-gnu-gfortran -fno-optimize-sibling-calls -fpic -O2 -pipe -c dgefa.f -o dgefa.o >x86_64-pc-linux-gnu-gfortran -fno-optimize-sibling-calls -fpic -O2 -pipe -c dgesl.f -o dgesl.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c init.c -o init.o >x86_64-pc-linux-gnu-gfortran -fno-optimize-sibling-calls -fpic -O2 -pipe -c linbin.f -o linbin.o >x86_64-pc-linux-gnu-gfortran -fno-optimize-sibling-calls -fpic -O2 -pipe -c linbin2D.f -o linbin2D.o >x86_64-pc-linux-gnu-gfortran -fno-optimize-sibling-calls -fpic -O2 -pipe -c locpoly.f -o locpoly.o >x86_64-pc-linux-gnu-gfortran -fno-optimize-sibling-calls -fpic -O2 -pipe -c rlbin.f -o rlbin.o >x86_64-pc-linux-gnu-gfortran -fno-optimize-sibling-calls -fpic -O2 -pipe -c sdiag.f -o sdiag.o >x86_64-pc-linux-gnu-gfortran -fno-optimize-sibling-calls -fpic -O2 -pipe -c sstdiag.f -o sstdiag.o >x86_64-pc-linux-gnu-gcc -shared -L/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/lib -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -lblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/lib -lR >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpqyaEl9/R.INSTALL15682cb491ba/KernSmooth/src' >installing to /var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/library/KernSmooth/libs >** R >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >** building package indices >** testing if installed package can be loaded >* DONE (KernSmooth) >* installing *source* package âforeignâ ... >** package âforeignâ successfully unpacked and MD5 sums checked >** using non-staged installation >** libs >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/Rtmpz4g5h9/R.INSTALL15661c5c2944/foreign/src' >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c R_systat.c -o R_systat.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c Rdbfread.c -o Rdbfread.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c Rdbfwrite.c -o Rdbfwrite.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c SASxport.c -o SASxport.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c avl.c -o avl.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dbfopen.c -o dbfopen.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c file-handle.c -o file-handle.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c format.c -o format.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c init.c -o init.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c minitab.c -o minitab.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pfm-read.c -o pfm-read.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c sfm-read.c -o sfm-read.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c spss.c -o spss.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c stataread.c -o stataread.o >x86_64-pc-linux-gnu-gcc -shared -L/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/lib -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/lib -lR >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/Rtmpz4g5h9/R.INSTALL15661c5c2944/foreign/src' >installing to /var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/library/foreign/libs >** R >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >** building package indices >** testing if installed package can be loaded >* DONE (foreign) >* installing *source* package ârpartâ ... >** package ârpartâ successfully unpacked and MD5 sums checked >** using non-staged installation >** libs >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpmoN658/R.INSTALL156c5649983d/rpart/src' >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c anova.c -o anova.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c anovapred.c -o anovapred.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c branch.c -o branch.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c bsplit.c -o bsplit.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c choose_surg.c -o choose_surg.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c fix_cp.c -o fix_cp.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c free_tree.c -o free_tree.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c gini.c -o gini.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c graycode.c -o graycode.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c init.c -o init.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c insert_split.c -o insert_split.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c make_cp_list.c -o make_cp_list.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c make_cp_table.c -o make_cp_table.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c mysort.c -o mysort.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c nodesplit.c -o nodesplit.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c partition.c -o partition.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c poisson.c -o poisson.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pred_rpart.c -o pred_rpart.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c print_tree.c -o print_tree.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rpart.c -o rpart.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rpart_callback.c -o rpart_callback.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rpartexp.c -o rpartexp.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rpartexp2.c -o rpartexp2.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rpcountup.c -o rpcountup.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rpmatrix.c -o rpmatrix.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rundown.c -o rundown.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rundown2.c -o rundown2.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c surrogate.c -o surrogate.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c usersplit.c -o usersplit.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c xpred.c -o xpred.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c xval.c -o xval.o >x86_64-pc-linux-gnu-gcc -shared -L/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/lib -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/lib -lR >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpmoN658/R.INSTALL156c5649983d/rpart/src' >installing to /var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/library/rpart/libs >** R >** data >*** moving datasets to lazyload DB >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >*** copying figures >** building package indices >** installing vignettes >** testing if installed package can be loaded >* DONE (rpart) >* installing *source* package âMASSâ ... >** package âMASSâ successfully unpacked and MD5 sums checked >** using non-staged installation >** libs >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpWJLUf9/R.INSTALL156a504e0985/MASS/src' >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c MASS.c -o MASS.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c lqs.c -o lqs.o >x86_64-pc-linux-gnu-gcc -shared -L/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/lib -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o MASS.so MASS.o lqs.o -L/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/lib -lR >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpWJLUf9/R.INSTALL156a504e0985/MASS/src' >installing to /var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/library/MASS/libs >** R >** data >*** moving datasets to lazyload DB >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >** building package indices >** testing if installed package can be loaded >* DONE (MASS) >begin installing recommended package cluster >begin installing recommended package class >* installing *source* package âclassâ ... >** package âclassâ successfully unpacked and MD5 sums checked >** using non-staged installation >** libs >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpOO0iYn/R.INSTALL16fa4009d519/class/src' >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c class.c -o class.o >x86_64-pc-linux-gnu-gcc -shared -L/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/lib -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o class.so class.o -L/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/lib -lR >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpOO0iYn/R.INSTALL16fa4009d519/class/src' >installing to /var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/library/class/libs >** R >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >** building package indices >** testing if installed package can be loaded >* DONE (class) >* installing *source* package âlatticeâ ... >** package âlatticeâ successfully unpacked and MD5 sums checked >** using non-staged installation >** libs >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/Rtmp3xTni9/R.INSTALL15634940e715/lattice/src' >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c init.c -o init.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c threeDplot.c -o threeDplot.o >x86_64-pc-linux-gnu-gcc -shared -L/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/lib -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o lattice.so init.o threeDplot.o -L/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/lib -lR >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/Rtmp3xTni9/R.INSTALL15634940e715/lattice/src' >installing to /var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/library/lattice/libs >** R >** data >*** moving datasets to lazyload DB >** demo >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >** building package indices >** testing if installed package can be loaded >* DONE (lattice) >begin installing recommended package Matrix >begin installing recommended package nlme >* installing *source* package âclusterâ ... >** package âclusterâ successfully unpacked and MD5 sums checked >** using non-staged installation >** libs >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/Rtmpet27en/R.INSTALL16fc390fda6c/cluster/src' >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c clara.c -o clara.o >x86_64-pc-linux-gnu-gfortran -fno-optimize-sibling-calls -fpic -O2 -pipe -c daisy.f -o daisy.o >x86_64-pc-linux-gnu-gfortran -fno-optimize-sibling-calls -fpic -O2 -pipe -c dysta.f -o dysta.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c fanny.c -o fanny.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c init.c -o init.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c mona.c -o mona.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pam.c -o pam.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c sildist.c -o sildist.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c spannel.c -o spannel.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c twins.c -o twins.o >x86_64-pc-linux-gnu-gcc -shared -L/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/lib -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -lgfortran -lm -lquadmath -L/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/lib -lR >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/Rtmpet27en/R.INSTALL16fc390fda6c/cluster/src' >installing to /var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/library/cluster/libs >** R >** data >*** moving datasets to lazyload DB >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >** building package indices >** testing if installed package can be loaded >* DONE (cluster) >* installing *source* package ânlmeâ ... >** package ânlmeâ successfully unpacked and MD5 sums checked >** using non-staged installation >** libs >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpPmejnh/R.INSTALL17612ad186e2/nlme/src' >x86_64-pc-linux-gnu-gfortran -fno-optimize-sibling-calls -fpic -O2 -pipe -c chol.f -o chol.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c corStruct.c -o corStruct.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c gnls.c -o gnls.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c init.c -o init.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c matrix.c -o matrix.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c nlOptimizer.c -o nlOptimizer.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c nlme.c -o nlme.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c nlmefit.c -o nlmefit.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pdMat.c -o pdMat.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pythag.c -o pythag.o >x86_64-pc-linux-gnu-gfortran -fno-optimize-sibling-calls -fpic -O2 -pipe -c rs.f -o rs.o >x86_64-pc-linux-gnu-gcc -shared -L/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/lib -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o pythag.o rs.o -lgfortran -lm -lquadmath -L/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/lib -lR >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpPmejnh/R.INSTALL17612ad186e2/nlme/src' >installing to /var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/library/nlme/libs >** R >** data >*** moving datasets to lazyload DB >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >** building package indices >** testing if installed package can be loaded >* DONE (nlme) >* installing *source* package âMatrixâ ... >** package âMatrixâ successfully unpacked and MD5 sums checked >** using non-staged installation >** libs >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src' >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c CHMfactor.c -o CHMfactor.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c Csparse.c -o Csparse.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c TMatrix_as.c -o TMatrix_as.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c Tsparse.c -o Tsparse.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c init.c -o init.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c Mutils.c -o Mutils.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c chm_common.c -o chm_common.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c cs.c -o cs.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c cs_utils.c -o cs_utils.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dense.c -o dense.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dgCMatrix.c -o dgCMatrix.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dgTMatrix.c -o dgTMatrix.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dgeMatrix.c -o dgeMatrix.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dpoMatrix.c -o dpoMatrix.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dppMatrix.c -o dppMatrix.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dsCMatrix.c -o dsCMatrix.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dsyMatrix.c -o dsyMatrix.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dspMatrix.c -o dspMatrix.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dtCMatrix.c -o dtCMatrix.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dtTMatrix.c -o dtTMatrix.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dtrMatrix.c -o dtrMatrix.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dtpMatrix.c -o dtpMatrix.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c factorizations.c -o factorizations.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ldense.c -o ldense.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c lgCMatrix.c -o lgCMatrix.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c sparseQR.c -o sparseQR.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c abIndex.c -o abIndex.o >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/CHOLMOD' >( cd Lib ; make clean ) >make[5]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/CHOLMOD/Lib' >make[5]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/CHOLMOD/Lib' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/CHOLMOD' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/COLAMD' >( cd Source ; make clean ) >make[5]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/COLAMD/Source' >make[5]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/COLAMD/Source' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/COLAMD' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/AMD' >( cd Source ; make clean ) >make[5]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/AMD/Source' >make[5]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/AMD/Source' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/AMD' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/SuiteSparse_config' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/SuiteSparse_config' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/CHOLMOD' >( cd Lib ; make -f "/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/etc/Makeconf" -f Makefile ) >make[5]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/CHOLMOD/Lib' >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Core/cholmod_aat.c -o cholmod_aat.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Core/cholmod_add.c -o cholmod_add.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Core/cholmod_band.c -o cholmod_band.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Core/cholmod_common.c -o cholmod_common.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Core/cholmod_complex.c -o cholmod_complex.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Core/cholmod_copy.c -o cholmod_copy.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Core/cholmod_dense.c -o cholmod_dense.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Core/cholmod_error.c -o cholmod_error.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Core/cholmod_factor.c -o cholmod_factor.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Core/cholmod_memory.c -o cholmod_memory.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Core/cholmod_sparse.c -o cholmod_sparse.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Core/cholmod_transpose.c -o cholmod_transpose.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Core/cholmod_triplet.c -o cholmod_triplet.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Core/cholmod_version.c -o cholmod_version.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Check/cholmod_check.c -o cholmod_check.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Check/cholmod_read.c -o cholmod_read.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Check/cholmod_write.c -o cholmod_write.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Modify/cholmod_updown.c -o cholmod_updown.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Core/cholmod_aat.c -o cholmod_l_aat.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Core/cholmod_add.c -o cholmod_l_add.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Core/cholmod_band.c -o cholmod_l_band.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Core/cholmod_common.c -o cholmod_l_common.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Core/cholmod_complex.c -o cholmod_l_complex.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Core/cholmod_copy.c -o cholmod_l_copy.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Core/cholmod_dense.c -o cholmod_l_dense.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Core/cholmod_error.c -o cholmod_l_error.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Core/cholmod_factor.c -o cholmod_l_factor.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Core/cholmod_memory.c -o cholmod_l_memory.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Core/cholmod_sparse.c -o cholmod_l_sparse.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Core/cholmod_transpose.c -o cholmod_l_transpose.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Core/cholmod_triplet.c -o cholmod_l_triplet.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Core/cholmod_version.c -o cholmod_l_version.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Check/cholmod_check.c -o cholmod_l_check.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Check/cholmod_read.c -o cholmod_l_read.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Check/cholmod_write.c -o cholmod_l_write.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Modify/cholmod_updown.c -o cholmod_l_updown.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -DDLONG -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o >x86_64-pc-linux-gnu-ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o >make[5]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/CHOLMOD/Lib' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/CHOLMOD' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/COLAMD' >( cd Source ; make -f "/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/etc/Makeconf" -f Makefile lib ) >make[5]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/COLAMD/Source' >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c colamd_global.c -o colamd_global.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c colamd.c -o colamd.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDLONG -c colamd.c -o colamd_l.o >x86_64-pc-linux-gnu-ar -rucs ../../COLAMD.a colamd_global.o colamd.o colamd_l.o >make[5]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/COLAMD/Source' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/COLAMD' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/AMD' >( cd Source ; make -f "/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/etc/Makeconf" -f Makefile lib ) >make[5]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/AMD/Source' >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDINT -c amd_1.c -o amd_i_1.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDLONG -c amd_1.c -o amd_l_1.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDINT -c amd_2.c -o amd_i_2.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDLONG -c amd_2.c -o amd_l_2.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDINT -c amd_order.c -o amd_i_order.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDLONG -c amd_order.c -o amd_l_order.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDINT -c amd_control.c -o amd_i_control.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDLONG -c amd_control.c -o amd_l_control.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDINT -c amd_info.c -o amd_i_info.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDLONG -c amd_info.c -o amd_l_info.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDINT -c amd_global.c -o amd_i_global.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -I../Include -DDLONG -c amd_global.c -o amd_l_global.o >x86_64-pc-linux-gnu-ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o amd_i_global.o amd_l_global.o >make[5]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/AMD/Source' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/AMD' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/SuiteSparse_config' >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -DNTIMER -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c SuiteSparse_config.c -o SuiteSparse_config.o >x86_64-pc-linux-gnu-ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src/SuiteSparse_config' >x86_64-pc-linux-gnu-gcc -shared -L/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/lib -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -L/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/lib -lRlapack -lblas -lgfortran -lm -lquadmath -L/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/lib -lR >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpFUA0eh/R.INSTALL175f174d278d/Matrix/src' >installing to /var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/library/Matrix/libs >** R >** data >** inst >** byte-compile and prepare package for lazy loading >Creating a generic function for âchol2invâ from âbaseâ in package âMatrixâ > (from the saved implicit definition) >Creating a generic function for âchol2invâ from package âbaseâ in package âMatrixâ >Creating a generic function for âdiagâ from package âbaseâ in package âMatrixâ >Creating a generic function for âdropâ from package âbaseâ in package âMatrixâ >Creating a generic function for âcov2corâ from package âstatsâ in package âMatrixâ >Creating a generic function for âunnameâ from package âbaseâ in package âMatrixâ >Creating a generic function for ânormâ from package âbaseâ in package âMatrixâ >Creating a generic function for ârcondâ from âbaseâ in package âMatrixâ > (from the saved implicit definition) >Creating a generic function for ârcondâ from package âbaseâ in package âMatrixâ >in method for âcoerceâ with signature â"matrix.csr","dgRMatrix"â: no definition for class âmatrix.csrâ >in method for âcoerceâ with signature â"dgRMatrix","matrix.csr"â: no definition for class âmatrix.csrâ >in method for âcoerceâ with signature â"matrix.csc","dgCMatrix"â: no definition for class âmatrix.cscâ >in method for âcoerceâ with signature â"dgCMatrix","matrix.csc"â: no definition for class âmatrix.cscâ >in method for âcoerceâ with signature â"matrix.coo","dgTMatrix"â: no definition for class âmatrix.cooâ >in method for âcoerceâ with signature â"dgTMatrix","matrix.coo"â: no definition for class âmatrix.cooâ >in method for âcoerceâ with signature â"dsparseMatrix","matrix.csr"â: no definition for class âmatrix.csrâ >in method for âcoerceâ with signature â"matrix.csr","dgCMatrix"â: no definition for class âmatrix.csrâ >in method for âcoerceâ with signature â"matrix.coo","dgCMatrix"â: no definition for class âmatrix.cooâ >in method for âcoerceâ with signature â"matrix.csr","RsparseMatrix"â: no definition for class âmatrix.csrâ >in method for âcoerceâ with signature â"matrix.csc","CsparseMatrix"â: no definition for class âmatrix.cscâ >in method for âcoerceâ with signature â"matrix.coo","TsparseMatrix"â: no definition for class âmatrix.cooâ >in method for âcoerceâ with signature â"matrix.csr","CsparseMatrix"â: no definition for class âmatrix.csrâ >in method for âcoerceâ with signature â"matrix.coo","CsparseMatrix"â: no definition for class âmatrix.cooâ >in method for âcoerceâ with signature â"matrix.csc","TsparseMatrix"â: no definition for class âmatrix.cscâ >in method for âcoerceâ with signature â"matrix.csr","TsparseMatrix"â: no definition for class âmatrix.csrâ >in method for âcoerceâ with signature â"CsparseMatrix","matrix.csr"â: no definition for class âmatrix.csrâ >in method for âcoerceâ with signature â"CsparseMatrix","matrix.coo"â: no definition for class âmatrix.cooâ >in method for âcoerceâ with signature â"CsparseMatrix","matrix.csc"â: no definition for class âmatrix.cscâ >in method for âcoerceâ with signature â"matrix.csr","Matrix"â: no definition for class âmatrix.csrâ >in method for âcoerceâ with signature â"matrix.coo","Matrix"â: no definition for class âmatrix.cooâ >in method for âcoerceâ with signature â"matrix.csc","Matrix"â: no definition for class âmatrix.cscâ >Creating a generic function for âcolSumsâ from package âbaseâ in package âMatrixâ >Creating a generic function for âcolMeansâ from package âbaseâ in package âMatrixâ >Creating a generic function for ârowSumsâ from package âbaseâ in package âMatrixâ >Creating a generic function for ârowMeansâ from package âbaseâ in package âMatrixâ >in method for âcolSumsâ with signature âx="igCMatrix"â: no definition for class âigCMatrixâ >in method for ârowSumsâ with signature âx="igCMatrix"â: no definition for class âigCMatrixâ >in method for âcolMeansâ with signature âx="igCMatrix"â: no definition for class âigCMatrixâ >in method for ârowMeansâ with signature âx="igCMatrix"â: no definition for class âigCMatrixâ >Creating a generic function for âzapsmallâ from package âbaseâ in package âMatrixâ >Creating a generic function for âdiag<-â from package âbaseâ in package âMatrixâ >Creating a generic function for âcrossprodâ from package âbaseâ in package âMatrixâ >Creating a generic function for âtcrossprodâ from package âbaseâ in package âMatrixâ >Creating a generic function for âwhichâ from package âbaseâ in package âMatrixâ >in method for âcoerceâ with signature â"graphAM","sparseMatrix"â: no definition for class âgraphAMâ >in method for âcoerceâ with signature â"graph","CsparseMatrix"â: no definition for class âgraphâ >in method for âcoerceâ with signature â"graph","Matrix"â: no definition for class âgraphâ >in method for âcoerceâ with signature â"graphNEL","CsparseMatrix"â: no definition for class âgraphNELâ >in method for âcoerceâ with signature â"graphNEL","TsparseMatrix"â: no definition for class âgraphNELâ >in method for âcoerceâ with signature â"sparseMatrix","graph"â: no definition for class âgraphâ >in method for âcoerceâ with signature â"sparseMatrix","graphNEL"â: no definition for class âgraphNELâ >in method for âcoerceâ with signature â"TsparseMatrix","graphNEL"â: no definition for class âgraphNELâ >Creating a generic function for âqr.Râ from package âbaseâ in package âMatrixâ >Creating a generic function for âqr.Qâ from package âbaseâ in package âMatrixâ >Creating a generic function for âqr.qyâ from package âbaseâ in package âMatrixâ >Creating a generic function for âqr.qtyâ from package âbaseâ in package âMatrixâ >Creating a generic function for âqr.coefâ from package âbaseâ in package âMatrixâ >Creating a generic function for âqr.residâ from package âbaseâ in package âMatrixâ >Creating a generic function for âqr.fittedâ from package âbaseâ in package âMatrixâ >Creating a generic function for âtoeplitzâ from package âstatsâ in package âMatrixâ >** help >*** installing help indices >** building package indices >** installing vignettes >** testing if installed package can be loaded >* DONE (Matrix) >begin installing recommended package survival >begin installing recommended package mgcv >* installing *source* package âsurvivalâ ... >** package âsurvivalâ successfully unpacked and MD5 sums checked >** using non-staged installation >** libs >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpAovCdA/R.INSTALL19bb454047cb/survival/src' >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c agexact.c -o agexact.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c agfit4.c -o agfit4.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c agfit5.c -o agfit5.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c agmart.c -o agmart.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c agmart3.c -o agmart3.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c agscore2.c -o agscore2.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c agsurv3.c -o agsurv3.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c agsurv4.c -o agsurv4.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c agsurv5.c -o agsurv5.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c chinv2.c -o chinv2.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c chinv3.c -o chinv3.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c cholesky2.c -o cholesky2.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c cholesky3.c -o cholesky3.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c cholesky5.c -o cholesky5.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c chsolve2.c -o chsolve2.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c chsolve3.c -o chsolve3.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c chsolve5.c -o chsolve5.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c concordance1.c -o concordance1.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c concordance3.c -o concordance3.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c cox_Rcallback.c -o cox_Rcallback.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c coxcount1.c -o coxcount1.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c coxdetail.c -o coxdetail.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c coxexact.c -o coxexact.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c coxfit5.c -o coxfit5.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c coxfit6.c -o coxfit6.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c coxmart.c -o coxmart.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c coxmart2.c -o coxmart2.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c coxph_wtest.c -o coxph_wtest.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c coxsafe.c -o coxsafe.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c coxscho.c -o coxscho.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c coxscore2.c -o coxscore2.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c coxsurv1.c -o coxsurv1.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c coxsurv2.c -o coxsurv2.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dmatrix.c -o dmatrix.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c doloop.c -o doloop.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c finegray.c -o finegray.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c gchol.c -o gchol.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c init.c -o init.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c multicheck.c -o multicheck.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c norisk.c -o norisk.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pyears1.c -o pyears1.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pyears2.c -o pyears2.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pyears3b.c -o pyears3b.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pystep.c -o pystep.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c survConcordance.c -o survConcordance.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c survdiff2.c -o survdiff2.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c survfit4.c -o survfit4.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c survfitci.c -o survfitci.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c survfitkm.c -o survfitkm.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c survpenal.c -o survpenal.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c survreg6.c -o survreg6.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c survreg7.c -o survreg7.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c survregc1.c -o survregc1.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c survregc2.c -o survregc2.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c survsplit.c -o survsplit.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c tmerge.c -o tmerge.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c zph1.c -o zph1.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c zph2.c -o zph2.o >x86_64-pc-linux-gnu-gcc -shared -L/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/lib -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart3.o agscore2.o agsurv3.o agsurv4.o agsurv5.o chinv2.o chinv3.o cholesky2.o cholesky3.o cholesky5.o chsolve2.o chsolve3.o chsolve5.o concordance1.o concordance3.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore2.o coxsurv1.o coxsurv2.o dmatrix.o doloop.o finegray.o gchol.o init.o multicheck.o norisk.o pyears1.o pyears2.o pyears3b.o pystep.o survConcordance.o survdiff2.o survfit4.o survfitci.o survfitkm.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o survsplit.o tmerge.o zph1.o zph2.o -L/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/lib -lR >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpAovCdA/R.INSTALL19bb454047cb/survival/src' >installing to /var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/library/survival/libs >** R >** data >*** moving datasets to lazyload DB >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >*** copying figures >** building package indices >** installing vignettes >** testing if installed package can be loaded >* DONE (survival) >begin installing recommended package boot >* installing *source* package âbootâ ... >** package âbootâ successfully unpacked and MD5 sums checked >** using non-staged installation >** R >** data >*** moving datasets to lazyload DB >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >** building package indices >** testing if installed package can be loaded >* DONE (boot) >* installing *source* package âmgcvâ ... >** package âmgcvâ successfully unpacked and MD5 sums checked >** using non-staged installation >** libs >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpCxzudA/R.INSTALL19bc350450f1/mgcv/src' >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c coxph.c -o coxph.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c discrete.c -o discrete.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c gdi.c -o gdi.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c init.c -o init.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c magic.c -o magic.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c mat.c -o mat.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c matrix.c -o matrix.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c mgcv.c -o mgcv.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c misc.c -o misc.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c mvn.c -o mvn.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c qp.c -o qp.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c soap.c -o soap.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c sparse-smooth.c -o sparse-smooth.o >x86_64-pc-linux-gnu-gcc -I"/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/include" -DNDEBUG -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c tprs.c -o tprs.o >x86_64-pc-linux-gnu-gcc -shared -L/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/lib -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o mgcv.so coxph.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o qp.o soap.o sparse-smooth.o tprs.o -L/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/lib -lRlapack -lblas -lgfortran -lm -lquadmath -fopenmp -L/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/lib -lR >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/RtmpCxzudA/R.INSTALL19bc350450f1/mgcv/src' >installing to /var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/library/mgcv/libs >** R >** data >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >** building package indices >** testing if installed package can be loaded >* DONE (mgcv) >make[2]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/src/library/Recommended' >make[1]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/src/library/Recommended' >make[1]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/src/library' >'pdflatex' is needed to make vignettes but is missing on your system. >make[1]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/src/library' >make: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/src/nmath/standalone' >(cd ../../include; make Rmath.h) >Copying source files >make[1]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/src/include' >make[1]: 'Rmath.h' is up to date. >make[1]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/src/include' >make[1]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/src/nmath/standalone' >making mlutils.d from mlutils.c >making d1mach.d from d1mach.c >making i1mach.d from i1mach.c >making fmax2.d from fmax2.c >making fmin2.d from fmin2.c >making fprec.d from fprec.c >making fround.d from fround.c >making ftrunc.d from ftrunc.c >making sign.d from sign.c >making fsign.d from fsign.c >making imax2.d from imax2.c >making imin2.d from imin2.c >making chebyshev.d from chebyshev.c >making log1p.d from log1p.c >making lgammacor.d from lgammacor.c >making gammalims.d from gammalims.c >making stirlerr.d from stirlerr.c >making bd0.d from bd0.c >making gamma.d from gamma.c >making lgamma.d from lgamma.c >making gamma_cody.d from gamma_cody.c >making beta.d from beta.c >making lbeta.d from lbeta.c >making polygamma.d from polygamma.c >making cospi.d from cospi.c >making bessel_i.d from bessel_i.c >making bessel_j.d from bessel_j.c >making bessel_k.d from bessel_k.c >making choose.d from choose.c >making bessel_y.d from bessel_y.c >making snorm.d from snorm.c >making sexp.d from sexp.c >making dgamma.d from dgamma.c >making pgamma.d from pgamma.c >making qgamma.d from qgamma.c >making rgamma.d from rgamma.c >making dbeta.d from dbeta.c >making pbeta.d from pbeta.c >making qbeta.d from qbeta.c >making rbeta.d from rbeta.c >making dunif.d from dunif.c >making punif.d from punif.c >making qunif.d from qunif.c >making runif.d from runif.c >making dnorm.d from dnorm.c >making pnorm.d from pnorm.c >making qnorm.d from qnorm.c >making rnorm.d from rnorm.c >making dlnorm.d from dlnorm.c >making plnorm.d from plnorm.c >making qlnorm.d from qlnorm.c >making rlnorm.d from rlnorm.c >making df.d from df.c >making pf.d from pf.c >making qf.d from qf.c >making rf.d from rf.c >making dnf.d from dnf.c >making dt.d from dt.c >making pt.d from pt.c >making qt.d from qt.c >making rt.d from rt.c >making dnt.d from dnt.c >making dchisq.d from dchisq.c >making pchisq.d from pchisq.c >making qchisq.d from qchisq.c >making rchisq.d from rchisq.c >making rnchisq.d from rnchisq.c >making dbinom.d from dbinom.c >making qbinom.d from qbinom.c >making pbinom.d from pbinom.c >making rbinom.d from rbinom.c >making rmultinom.d from rmultinom.c >making dcauchy.d from dcauchy.c >making pcauchy.d from pcauchy.c >making qcauchy.d from qcauchy.c >making dexp.d from dexp.c >making rcauchy.d from rcauchy.c >making pexp.d from pexp.c >making qexp.d from qexp.c >making rexp.d from rexp.c >making dgeom.d from dgeom.c >making pgeom.d from pgeom.c >making qgeom.d from qgeom.c >making rgeom.d from rgeom.c >making phyper.d from phyper.c >making dhyper.d from dhyper.c >making qhyper.d from qhyper.c >making rhyper.d from rhyper.c >making dnbinom.d from dnbinom.c >making pnbinom.d from pnbinom.c >making qnbinom.d from qnbinom.c >making rnbinom.d from rnbinom.c >making ppois.d from ppois.c >making dpois.d from dpois.c >making qpois.d from qpois.c >making rpois.d from rpois.c >making dweibull.d from dweibull.c >making pweibull.d from pweibull.c >making qweibull.d from qweibull.c >making rweibull.d from rweibull.c >making dlogis.d from dlogis.c >making plogis.d from plogis.c >making qlogis.d from qlogis.c >making rlogis.d from rlogis.c >making dnchisq.d from dnchisq.c >making pnchisq.d from pnchisq.c >making qnchisq.d from qnchisq.c >making dnbeta.d from dnbeta.c >making pnbeta.d from pnbeta.c >making qnbeta.d from qnbeta.c >making pnf.d from pnf.c >making pnt.d from pnt.c >making qnf.d from qnf.c >making qnt.d from qnt.c >making ptukey.d from ptukey.c >making qtukey.d from qtukey.c >making toms708.d from toms708.c >making wilcox.d from wilcox.c >making signrank.d from signrank.c >making std_unif.d from std_unif.c >make[1]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/src/nmath/standalone' >make[1]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/src/nmath/standalone' >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c mlutils.c -o mlutils.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c d1mach.c -o d1mach.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c i1mach.c -o i1mach.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c fmax2.c -o fmax2.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c fmin2.c -o fmin2.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c fprec.c -o fprec.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c fround.c -o fround.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ftrunc.c -o ftrunc.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c sign.c -o sign.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c fsign.c -o fsign.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c imax2.c -o imax2.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c imin2.c -o imin2.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c chebyshev.c -o chebyshev.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c log1p.c -o log1p.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c lgammacor.c -o lgammacor.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c gammalims.c -o gammalims.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c stirlerr.c -o stirlerr.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c bd0.c -o bd0.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c gamma.c -o gamma.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c lgamma.c -o lgamma.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c gamma_cody.c -o gamma_cody.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c beta.c -o beta.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c lbeta.c -o lbeta.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c polygamma.c -o polygamma.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c cospi.c -o cospi.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c bessel_i.c -o bessel_i.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c bessel_j.c -o bessel_j.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c bessel_k.c -o bessel_k.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c bessel_y.c -o bessel_y.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c choose.c -o choose.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c snorm.c -o snorm.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c sexp.c -o sexp.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dgamma.c -o dgamma.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pgamma.c -o pgamma.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c qgamma.c -o qgamma.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rgamma.c -o rgamma.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dbeta.c -o dbeta.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pbeta.c -o pbeta.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c qbeta.c -o qbeta.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rbeta.c -o rbeta.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dunif.c -o dunif.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c punif.c -o punif.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c qunif.c -o qunif.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c runif.c -o runif.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dnorm.c -o dnorm.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pnorm.c -o pnorm.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c qnorm.c -o qnorm.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rnorm.c -o rnorm.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dlnorm.c -o dlnorm.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c plnorm.c -o plnorm.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c qlnorm.c -o qlnorm.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rlnorm.c -o rlnorm.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c df.c -o df.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pf.c -o pf.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c qf.c -o qf.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rf.c -o rf.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dnf.c -o dnf.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dt.c -o dt.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pt.c -o pt.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c qt.c -o qt.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rt.c -o rt.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dnt.c -o dnt.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dchisq.c -o dchisq.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pchisq.c -o pchisq.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c qchisq.c -o qchisq.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rchisq.c -o rchisq.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rnchisq.c -o rnchisq.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dbinom.c -o dbinom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pbinom.c -o pbinom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c qbinom.c -o qbinom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rbinom.c -o rbinom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rmultinom.c -o rmultinom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dcauchy.c -o dcauchy.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pcauchy.c -o pcauchy.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c qcauchy.c -o qcauchy.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rcauchy.c -o rcauchy.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dexp.c -o dexp.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pexp.c -o pexp.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c qexp.c -o qexp.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rexp.c -o rexp.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dgeom.c -o dgeom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pgeom.c -o pgeom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c qgeom.c -o qgeom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rgeom.c -o rgeom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dhyper.c -o dhyper.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c phyper.c -o phyper.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c qhyper.c -o qhyper.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rhyper.c -o rhyper.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dnbinom.c -o dnbinom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pnbinom.c -o pnbinom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c qnbinom.c -o qnbinom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rnbinom.c -o rnbinom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dpois.c -o dpois.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ppois.c -o ppois.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c qpois.c -o qpois.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rpois.c -o rpois.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dweibull.c -o dweibull.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pweibull.c -o pweibull.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c qweibull.c -o qweibull.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rweibull.c -o rweibull.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dlogis.c -o dlogis.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c plogis.c -o plogis.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c qlogis.c -o qlogis.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c rlogis.c -o rlogis.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dnchisq.c -o dnchisq.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pnchisq.c -o pnchisq.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c qnchisq.c -o qnchisq.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c dnbeta.c -o dnbeta.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pnbeta.c -o pnbeta.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c qnbeta.c -o qnbeta.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pnf.c -o pnf.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c pnt.c -o pnt.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c qnf.c -o qnf.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c qnt.c -o qnt.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c ptukey.c -o ptukey.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c qtukey.c -o qtukey.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c toms708.c -o toms708.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c wilcox.c -o wilcox.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c signrank.c -o signrank.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -g -ggdb -frecord-gcc-switches -march=native -c std_unif.c -o std_unif.lo >x86_64-pc-linux-gnu-gcc -shared -fopenmp -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -Wl,-soname=libRmath.so mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm -o libRmath.so >make[1]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/src/nmath/standalone' >make: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/src/nmath/standalone' >make[1]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/tests' >make[2]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/tests' >make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/tests/Examples' >Testing examples for package âbaseâ >Testing examples for package âtoolsâ > comparing âtools-Ex.Routâ to âtools-Ex.Rout.saveâ ... OK >Testing examples for package âutilsâ >Testing examples for package âgrDevicesâ > comparing âgrDevices-Ex.Routâ to âgrDevices-Ex.Rout.saveâ ... OK >Testing examples for package âgraphicsâ > comparing âgraphics-Ex.Routâ to âgraphics-Ex.Rout.saveâ ... OK >Testing examples for package âstatsâ > comparing âstats-Ex.Routâ to âstats-Ex.Rout.saveâ ... OK >Testing examples for package âdatasetsâ > comparing âdatasets-Ex.Routâ to âdatasets-Ex.Rout.saveâ ... OK >Testing examples for package âmethodsâ >Testing examples for package âgridâ > comparing âgrid-Ex.Routâ to âgrid-Ex.Rout.saveâ ... OK >Testing examples for package âsplinesâ > comparing âsplines-Ex.Routâ to âsplines-Ex.Rout.saveâ ... OK >Testing examples for package âstats4â > comparing âstats4-Ex.Routâ to âstats4-Ex.Rout.saveâ ... OK >Testing examples for package âtcltkâ >Testing examples for package âcompilerâ >Testing examples for package âparallelâ >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/tests/Examples' >make[2]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/tests' >make[2]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/tests' >make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. >running strict specific tests >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/tests' >running code in 'eval-etc.R' ... OK > comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ... OK >running code in 'simple-true.R' ... OK > comparing 'simple-true.Rout' to './simple-true.Rout.save' ... OK >running code in 'arith-true.R' ... OK > comparing 'arith-true.Rout' to './arith-true.Rout.save' ... OK >running code in 'arith.R' ... OK > comparing 'arith.Rout' to './arith.Rout.save' ... OK >running code in 'lm-tests.R' ... OK > comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ... OK >running code in 'ok-errors.R' ... OK > comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ... OK >running code in 'method-dispatch.R' ... OK > comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ... OK >running code in 'any-all.R' ... OK > comparing 'any-all.Rout' to './any-all.Rout.save' ... OK >running code in 'd-p-q-r-tests.R' ... OK > comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ... OK >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/tests' >running sloppy specific tests >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/tests' >running code in 'complex.R' ... OK > comparing 'complex.Rout' to './complex.Rout.save' ... OK >running code in 'eval-etc-2.R' ... OK > comparing 'eval-etc-2.Rout' to './eval-etc-2.Rout.save' ... OK >running code in 'print-tests.R' ... OK > comparing 'print-tests.Rout' to './print-tests.Rout.save' ... OK >running code in 'lapack.R' ... OK > comparing 'lapack.Rout' to './lapack.Rout.save' ... OK >running code in 'datasets.R' ... OK > comparing 'datasets.Rout' to './datasets.Rout.save' ... OK >running code in 'datetime.R' ... OK > comparing 'datetime.Rout' to './datetime.Rout.save' ... OK >running code in 'iec60559.R' ... OK > comparing 'iec60559.Rout' to './iec60559.Rout.save' ... OK >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/tests' >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/tests' >checking Sys.timezone ... >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/tests' >running code in 'timezone.R' ... OK >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/tests' >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/tests' >make[2]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/tests' >make[2]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/tests' >make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. >running regression tests ... >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/tests' >running code in 'array-subset.R' ... OK >running code in 'reg-tests-1a.R' ... OK >running code in 'reg-tests-1b.R' ... OK >running code in 'reg-tests-1c.R' ... OK >running code in 'reg-tests-1d.R' ... OK >running code in 'reg-tests-2.R' ... OK > comparing 'reg-tests-2.Rout' to './reg-tests-2.Rout.save' ... OK >running code in 'reg-examples1.R' ... OK >running code in 'reg-examples2.R' ... OK >running code in 'reg-packages.R' ...make[3]: *** [Makefile.common:106: reg-packages.Rout] Error 1 >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/tests' >make[2]: *** [Makefile.common:292: test-Reg] Error 2 >make[2]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/tests' >make[1]: *** [Makefile.common:171: test-all-basics] Error 1 >make[1]: Leaving directory '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3/tests' >make: *** [Makefile:241: check] Error 2 > * ERROR: dev-lang/R-3.6.3-r1::gentoo failed (test phase): > * Make check failed. See above for details. > * > * Call stack: > * ebuild.sh, line 125: Called src_test > * environment, line 2215: Called default > * phase-functions.sh, line 855: Called default_src_test > * phase-functions.sh, line 884: Called __eapi0_src_test > * phase-helpers.sh, line 779: Called die > * The specific snippet of code: > * $emake_cmd ${internal_opts} check || \ > * die "Make check failed. See above for details." > * > * If you need support, post the output of `emerge --info '=dev-lang/R-3.6.3-r1::gentoo'`, > * the complete build log and the output of `emerge -pqv '=dev-lang/R-3.6.3-r1::gentoo'`. > * The complete build log is located at '/var/log/emerge-log/build/dev-lang/R-3.6.3-r1:20200418-134325.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/dev-lang/R-3.6.3-r1/temp/environment'. > * Working directory: '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3' > * S: '/var/tmp/portage/dev-lang/R-3.6.3-r1/work/R-3.6.3'
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