buid log

build.log (text/x-log), 11.56 KB, created by Mathieu Chouinard on 2020-04-15 11:26:46 UTC

[32;01m * [39;49;00mPackage:    sci-libs/scipy-1.4.1
[32;01m * [39;49;00mRepository: gentoo
[32;01m * [39;49;00mMaintainer: [e-mail]
[32;01m * [39;49;00mUSE:        abi_x86_64 amd64 doc elibc_glibc kernel_linux python_targets_python3_6 python_targets_python3_7 python_targets_python3_8 sparse userland_GNU
[32;01m * [39;49;00mFEATURES:   network-sandbox sandbox userpriv usersandbox
 [32;01m*[0m Using following Fortran compiler:
 [32;01m*[0m   F77: x86_64-pc-linux-gnu-gfortran
 [32;01m*[0m   FC:  x86_64-pc-linux-gnu-gfortran
>>> Unpacking source...
>>> Unpacking scipy-1.4.1.tar.gz to /var/tmp/portage/sci-libs/scipy-1.4.1/work
>>> Unpacking scipy-1.4.1-html.zip to /var/tmp/portage/sci-libs/scipy-1.4.1/work
>>> Unpacking scipy-1.4.1-ref.pdf to /var/tmp/portage/sci-libs/scipy-1.4.1/work
unpack scipy-1.4.1-ref.pdf: file format not recognized. Ignoring.
>>> Source unpacked in /var/tmp/portage/sci-libs/scipy-1.4.1/work
>>> Preparing source in /var/tmp/portage/sci-libs/scipy-1.4.1/work/scipy-1.4.1 ...
 [32;01m*[0m Will copy sources from /var/tmp/portage/sci-libs/scipy-1.4.1/work/scipy-1.4.1
 [32;01m*[0m python3_6: copying to /var/tmp/portage/sci-libs/scipy-1.4.1/work/scipy-1.4.1-python3_6
 [32;01m*[0m python3_7: copying to /var/tmp/portage/sci-libs/scipy-1.4.1/work/scipy-1.4.1-python3_7
 [32;01m*[0m python3_8: copying to /var/tmp/portage/sci-libs/scipy-1.4.1/work/scipy-1.4.1-python3_8
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-libs/scipy-1.4.1/work/scipy-1.4.1 ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-libs/scipy-1.4.1/work/scipy-1.4.1 ...
 [32;01m*[0m python3_6: running distutils-r1_run_phase python_compile
scipy/linalg/_generate_pyx.py: all files up-to-date
scipy/special/_generate_pyx.py: all files up-to-date
Running scipy/special/_generate_pyx.py
Running scipy/linalg/_generate_pyx.py
Processing scipy/_lib/_ccallback_c.pyx
Processing scipy/_lib/messagestream.pyx
Processing scipy/sparse/_csparsetools.pyx.in
Processing scipy/sparse/csgraph/_reordering.pyx
Processing scipy/sparse/csgraph/_min_spanning_tree.pyx
Processing scipy/sparse/csgraph/_traversal.pyx
Processing scipy/sparse/csgraph/_shortest_path.pyx
Processing scipy/sparse/csgraph/_matching.pyx
Processing scipy/sparse/csgraph/_tools.pyx
Processing scipy/sparse/csgraph/_flow.pyx
Processing scipy/ndimage/src/_cytest.pyx
Processing scipy/ndimage/src/_ni_label.pyx
Processing scipy/cluster/_hierarchy.pyx
Processing scipy/cluster/_optimal_leaf_ordering.pyx
Processing scipy/cluster/_vq.pyx
Processing scipy/fftpack/convolve.pyx
Processing scipy/optimize/_bglu_dense.pyx
Processing scipy/optimize/_group_columns.pyx
Processing scipy/optimize/_trlib/_trlib.pyx
Processing scipy/optimize/_lsq/givens_elimination.pyx
Processing scipy/optimize/cython_optimize/_zeros.pyx.in
Processing scipy/spatial/_hausdorff.pyx
Processing scipy/spatial/qhull.pyx
Processing scipy/spatial/_voronoi.pyx
Processing scipy/spatial/ckdtree.pyx
Processing scipy/signal/_peak_finding_utils.pyx
Processing scipy/signal/_max_len_seq_inner.pyx
Processing scipy/signal/_spectral.pyx
Processing scipy/signal/_upfirdn_apply.pyx
Processing scipy/signal/_sosfilt.pyx
Processing scipy/special/_comb.pyx
Processing scipy/special/_ufuncs.pyx
Processing scipy/special/cython_special.pyx
Processing scipy/special/_ellip_harm_2.pyx
Processing scipy/special/_ufuncs_cxx.pyx
Processing scipy/special/_test_round.pyx
Processing scipy/io/matlab/streams.pyx
Processing scipy/io/matlab/mio5_utils.pyx
Processing scipy/io/matlab/mio_utils.pyx
Processing scipy/linalg/_solve_toeplitz.pyx
Processing scipy/linalg/cython_lapack.pyx
Processing scipy/linalg/_decomp_update.pyx.in
Processing scipy/linalg/cython_blas.pyx
Processing scipy/interpolate/interpnd.pyx
Processing scipy/interpolate/_bspl.pyx
Processing scipy/interpolate/_ppoly.pyx
Processing scipy/stats/_stats.pyx
python3.6 setup.py build config_fc --noopt --noarch
lapack_opt_info:
system_info:
  NOT AVAILABLE

flame_info:
customize UnixCCompiler
  libraries flame not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
  NOT AVAILABLE

accelerate_info:
  NOT AVAILABLE

lapack_info:
customize UnixCCompiler
  FOUND:
    libraries = ['lapack']
    library_dirs = ['/usr/lib64']
    language = f77

blas_opt_info:
blas_info:
customize UnixCCompiler
customize UnixCCompiler
C compiler: x86_64-pc-linux-gnu-gcc -O2 -pipe -fPIC

creating /var/tmp/portage/sci-libs/scipy-1.4.1/temp/tmpnqvoyuex/var
creating /var/tmp/portage/sci-libs/scipy-1.4.1/temp/tmpnqvoyuex/var/tmp
creating /var/tmp/portage/sci-libs/scipy-1.4.1/temp/tmpnqvoyuex/var/tmp/portage
creating /var/tmp/portage/sci-libs/scipy-1.4.1/temp/tmpnqvoyuex/var/tmp/portage/sci-libs
creating /var/tmp/portage/sci-libs/scipy-1.4.1/temp/tmpnqvoyuex/var/tmp/portage/sci-libs/scipy-1.4.1
creating /var/tmp/portage/sci-libs/scipy-1.4.1/temp/tmpnqvoyuex/var/tmp/portage/sci-libs/scipy-1.4.1/temp
creating /var/tmp/portage/sci-libs/scipy-1.4.1/temp/tmpnqvoyuex/var/tmp/portage/sci-libs/scipy-1.4.1/temp/tmpnqvoyuex
compile options: '-I -c'
x86_64-pc-linux-gnu-gcc: /var/tmp/portage/sci-libs/scipy-1.4.1/temp/tmpnqvoyuex/source.c
/usr/lib/gcc/x86_64-pc-linux-gnu/9.3.0/../../../../x86_64-pc-linux-gnu/bin/ld: /var/tmp/portage/sci-libs/scipy-1.4.1/temp/ccd4ApTM.o: in function `main':
source.c:(.text.startup+0x8c): undefined reference to `cblas_ddot'
collect2: error: ld returned 1 exit status
  FOUND:
    libraries = ['blas', 'cblas']
    library_dirs = ['/usr/lib64']
    include_dirs = ['']

  FOUND:
    define_macros = [('NO_ATLAS_INFO', 1)]
    libraries = ['blas', 'cblas']
    library_dirs = ['/usr/lib64']
    include_dirs = ['']

  FOUND:
    libraries = ['lapack', 'blas', 'cblas']
    library_dirs = ['/usr/lib64']
    language = f77
    define_macros = [('NO_ATLAS_INFO', 1)]
    include_dirs = ['']

Running from scipy source directory.
/usr/lib64/python3.6/site-packages/numpy/distutils/system_info.py:669: UserWarning: 
    Optimized (vendor) Blas libraries are not found.
    Falls back to netlib Blas library which has worse performance.
    A better performance should be easily gained by switching
    Blas library.
  self.calc_info()
/usr/lib64/python3.6/site-packages/numpy/distutils/system_info.py:761: UserWarning: Specified path /usr/lib64/python3.6/site-packages/numpy/__init__.py/include/python3.6m is invalid.
  return self.get_paths(self.section, key)
non-existing path in 'scipy/fft/_pocketfft': '/var/tmp/portage/sci-libs/scipy-1.4.1/homedir/.local/include/python3.6m'
non-existing path in 'scipy/interpolate': 'src/multipack.h'
Splitting linalg.interpolative Fortran source files
non-existing path in 'scipy/signal/windows': 'tests'
non-existing path in 'scipy/sparse': 'sparsetools/sparsetools_impl.h'
non-existing path in 'scipy/sparse': 'sparsetools/bsr_impl.h'
non-existing path in 'scipy/sparse': 'sparsetools/csc_impl.h'
non-existing path in 'scipy/sparse': 'sparsetools/csr_impl.h'
non-existing path in 'scipy/sparse': 'sparsetools/other_impl.h'
Traceback (most recent call last):
  File "/usr/lib64/python3.6/site-packages/numpy/distutils/npy_pkg_config.py", line 371, in read_config
    return _CACHE[pkgname]
KeyError: 'npymath'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "setup.py", line 540, in <module>
    setup_package()
  File "setup.py", line 536, in setup_package
    setup(**metadata)
  File "/usr/lib64/python3.6/site-packages/numpy/distutils/core.py", line 137, in setup
    config = configuration()
  File "setup.py", line 443, in configuration
    config.add_subpackage('scipy')
  File "/usr/lib64/python3.6/site-packages/numpy/distutils/misc_util.py", line 1035, in add_subpackage
    caller_level = 2)
  File "/usr/lib64/python3.6/site-packages/numpy/distutils/misc_util.py", line 1004, in get_subpackage
    caller_level = caller_level + 1)
  File "/usr/lib64/python3.6/site-packages/numpy/distutils/misc_util.py", line 941, in _get_configuration_from_setup_py
    config = setup_module.configuration(*args)
  File "scipy/setup.py", line 23, in configuration
    config.add_subpackage('spatial')
  File "/usr/lib64/python3.6/site-packages/numpy/distutils/misc_util.py", line 1035, in add_subpackage
    caller_level = 2)
  File "/usr/lib64/python3.6/site-packages/numpy/distutils/misc_util.py", line 1004, in get_subpackage
    caller_level = caller_level + 1)
  File "/usr/lib64/python3.6/site-packages/numpy/distutils/misc_util.py", line 941, in _get_configuration_from_setup_py
    config = setup_module.configuration(*args)
  File "scipy/spatial/setup.py", line 76, in configuration
    extra_info=get_misc_info("npymath"))
  File "/usr/lib64/python3.6/site-packages/numpy/distutils/misc_util.py", line 2186, in get_info
    pkg_info = get_pkg_info(pkgname, dirs)
  File "/usr/lib64/python3.6/site-packages/numpy/distutils/misc_util.py", line 2138, in get_pkg_info
    return read_config(pkgname, dirs)
  File "/usr/lib64/python3.6/site-packages/numpy/distutils/npy_pkg_config.py", line 373, in read_config
    v = _read_config_imp(pkg_to_filename(pkgname), dirs)
  File "/usr/lib64/python3.6/site-packages/numpy/distutils/npy_pkg_config.py", line 309, in _read_config_imp
    meta, vars, sections, reqs = _read_config(filenames)
  File "/usr/lib64/python3.6/site-packages/numpy/distutils/npy_pkg_config.py", line 292, in _read_config
    meta, vars, sections, reqs = parse_config(f, dirs)
  File "/usr/lib64/python3.6/site-packages/numpy/distutils/npy_pkg_config.py", line 264, in parse_config
    raise PkgNotFound("Could not find file(s) %s" % str(filenames))
numpy.distutils.npy_pkg_config.PkgNotFound: Could not find file(s) ['/usr/lib64/python3.6/site-packages/numpy/core/lib/npy-pkg-config/npymath.ini']
 [31;01m*[0m ERROR: sci-libs/scipy-1.4.1::gentoo failed (compile phase):
 [31;01m*[0m   (no error message)
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m     ebuild.sh, line  125:  Called src_compile
 [31;01m*[0m   environment, line 4317:  Called distutils-r1_src_compile
 [31;01m*[0m   environment, line 1493:  Called _distutils-r1_run_foreach_impl 'python_compile'
 [31;01m*[0m   environment, line  409:  Called python_foreach_impl 'distutils-r1_run_phase' 'python_compile'
 [31;01m*[0m   environment, line 3829:  Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile'
 [31;01m*[0m   environment, line 3118:  Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile'
 [31;01m*[0m   environment, line 3116:  Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_compile'
 [31;01m*[0m   environment, line 1051:  Called distutils-r1_run_phase 'python_compile'
 [31;01m*[0m   environment, line 1486:  Called python_compile
 [31;01m*[0m   environment, line 3574:  Called distutils-r1_python_compile 'config_fc' '--noopt' '--noarch'
 [31;01m*[0m   environment, line 1356:  Called esetup.py 'build' 'config_fc' '--noopt' '--noarch'
 [31;01m*[0m   environment, line 2152:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m       "${@}" || die "${die_args[@]}";
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of `emerge --info '=sci-libs/scipy-1.4.1::gentoo'`,
 [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-libs/scipy-1.4.1::gentoo'`.
 [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-libs/scipy-1.4.1/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-libs/scipy-1.4.1/temp/environment'.
 [31;01m*[0m Working directory: '/var/tmp/portage/sci-libs/scipy-1.4.1/work/scipy-1.4.1-python3_6'
 [31;01m*[0m S: '/var/tmp/portage/sci-libs/scipy-1.4.1/work/scipy-1.4.1'