sci-libs:matio-1.5.17:20200404-220251.log

sci-libs:matio-1.5.17:20200404-220251.log (text/plain), 15.04 KB, created by Toralf Förster on 2020-04-05 09:06:10 UTC

 * Package:    sci-libs/matio-1.5.17
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_musl kernel_linux userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking matio-1.5.17.tar.gz to /var/tmp/portage/sci-libs/matio-1.5.17/work
>>> Source unpacked in /var/tmp/portage/sci-libs/matio-1.5.17/work
>>> Preparing source in /var/tmp/portage/sci-libs/matio-1.5.17/work/matio-1.5.17 ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-libs/matio-1.5.17/work/matio-1.5.17 ...
 * econf: updating matio-1.5.17/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating matio-1.5.17/config/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=x86_64-gentoo-linux-musl --host=x86_64-gentoo-linux-musl --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-silent-rules --docdir=/usr/share/doc/matio-1.5.17 --htmldir=/usr/share/doc/matio-1.5.17/html --with-sysroot=/ --libdir=/usr/lib --disable-static --disable-mat73 --disable-extended-sparse
checking for a BSD-compatible install... /usr/lib/portage/python3.6/ebuild-helpers/xattr/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking build system type... x86_64-gentoo-linux-musl
checking host system type... x86_64-gentoo-linux-musl
checking for x86_64-gentoo-linux-musl-pgcc... no
checking for x86_64-gentoo-linux-musl-icc... no
checking for x86_64-gentoo-linux-musl-gcc... x86_64-gentoo-linux-musl-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-gentoo-linux-musl-gcc accepts -g... yes
checking for x86_64-gentoo-linux-musl-gcc option to accept ISO C89... none needed
checking whether x86_64-gentoo-linux-musl-gcc understands -c and -o together... yes
checking debug mode... no
checking profile mode... no
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
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checking for ld used by x86_64-gentoo-linux-musl-gcc... /usr/x86_64-gentoo-linux-musl/bin/ld
checking if the linker (/usr/x86_64-gentoo-linux-musl/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-gentoo-linux-musl-nm -B
checking the name lister (/usr/bin/x86_64-gentoo-linux-musl-nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 98304
checking how to convert x86_64-gentoo-linux-musl file names to x86_64-gentoo-linux-musl format... func_convert_file_noop
checking how to convert x86_64-gentoo-linux-musl file names to toolchain format... func_convert_file_noop
checking for /usr/x86_64-gentoo-linux-musl/bin/ld option to reload object files... -r
checking for x86_64-gentoo-linux-musl-objdump... x86_64-gentoo-linux-musl-objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-gentoo-linux-musl-dlltool... no
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checking how to associate runtime and link libraries... printf %s\n
checking for x86_64-gentoo-linux-musl-ar... x86_64-gentoo-linux-musl-ar
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checking command to parse /usr/bin/x86_64-gentoo-linux-musl-nm -B output from x86_64-gentoo-linux-musl-gcc object... ok
checking for sysroot... /
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checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for x86_64-gentoo-linux-musl-mt... no
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... x86_64-gentoo-linux-musl-gcc -E
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checking if x86_64-gentoo-linux-musl-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-gentoo-linux-musl-gcc option to produce PIC... -fPIC -DPIC
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checking if x86_64-gentoo-linux-musl-gcc static flag -static works... yes
checking if x86_64-gentoo-linux-musl-gcc supports -c -o file.o... yes
checking if x86_64-gentoo-linux-musl-gcc supports -c -o file.o... (cached) yes
checking whether the x86_64-gentoo-linux-musl-gcc linker (/usr/x86_64-gentoo-linux-musl/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
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checking whether make sets $(MAKE)... (cached) yes
checking for grep that handles long lines and -e... (cached) /bin/grep
checking for pow in -lm... yes
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checking locale.h usability... yes
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checking for struct lconv.decimal_point... yes
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checking for getopt_long... internal
checking size of double... 8
checking size of float... 4
checking size of long long... 8
checking size of long... 8
checking size of int... 4
checking size of short... 2
checking size of char... 1
checking size of void *... 8
checking size of size_t... 8
checking for mat_int64_t... int64_t
checking for mat_uint64_t... uint64_t
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checking for long double... yes
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checking for matlab... no
no
checking for zlib Library... -lz
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checking if HDF5 interface is >= v1.8... yes
checking enable MAT v7.3 file support... no
checking for default MAT file version... MAT_FT_MAT5
checking enable extended sparse types... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating matio.pc
config.status: creating src/Makefile
config.status: creating getopt/Makefile
config.status: creating tools/Makefile
config.status: creating test/Makefile
config.status: creating documentation/Makefile
config.status: creating src/matioConfig.h
config.status: creating src/matio_pubconf.h
config.status: executing libtool commands
config.status: executing test/atconfig commands

   MATIO Configuration Summary       
==============================================================
           C Compiler: x86_64-gentoo-linux-musl-gcc
               CFLAGS:  -O2 -pipe -march=native
     Shared Libraries: yes
     Static Libraries: no
  default MAT version: MAT_FT_MAT5

Features --------------------------------------------
  MAT v7.3 file support: no
Extended sparse support: no

Packages --------------------------------------------
                 zlib: -lz
                 hdf5: -lhdf5
               MATLAB: 


>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-libs/matio-1.5.17/work/matio-1.5.17 ...
make -j1 
Making all in src
make[1]: Entering directory '/var/tmp/portage/sci-libs/matio-1.5.17/work/matio-1.5.17/src'
make  all-am
make[2]: Entering directory '/var/tmp/portage/sci-libs/matio-1.5.17/work/matio-1.5.17/src'
/bin/sh ../libtool  --tag=CC   --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I.    -I.    -O2 -pipe -march=native -c -o snprintf.lo snprintf.c
libtool: compile:  x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I. -O2 -pipe -march=native -c snprintf.c  -fPIC -DPIC -o .libs/snprintf.o
/bin/sh ../libtool  --tag=CC   --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I.    -I.    -O2 -pipe -march=native -c -o endian.lo endian.c
libtool: compile:  x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I. -O2 -pipe -march=native -c endian.c  -fPIC -DPIC -o .libs/endian.o
/bin/sh ../libtool  --tag=CC   --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I.    -I.    -O2 -pipe -march=native -c -o io.lo io.c
libtool: compile:  x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I. -O2 -pipe -march=native -c io.c  -fPIC -DPIC -o .libs/io.o
/bin/sh ../libtool  --tag=CC   --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I.    -I.    -O2 -pipe -march=native -c -o inflate.lo inflate.c
libtool: compile:  x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I. -O2 -pipe -march=native -c inflate.c  -fPIC -DPIC -o .libs/inflate.o
/bin/sh ../libtool  --tag=CC   --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I.    -I.    -O2 -pipe -march=native -c -o read_data.lo read_data.c
libtool: compile:  x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I. -O2 -pipe -march=native -c read_data.c  -fPIC -DPIC -o .libs/read_data.o
/bin/sh ../libtool  --tag=CC   --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I.    -I.    -O2 -pipe -march=native -c -o mat5.lo mat5.c
libtool: compile:  x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I. -O2 -pipe -march=native -c mat5.c  -fPIC -DPIC -o .libs/mat5.o
/bin/sh ../libtool  --tag=CC   --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I.    -I.    -O2 -pipe -march=native -c -o mat4.lo mat4.c
libtool: compile:  x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I. -O2 -pipe -march=native -c mat4.c  -fPIC -DPIC -o .libs/mat4.o
/bin/sh ../libtool  --tag=CC   --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I.    -I.    -O2 -pipe -march=native -c -o mat.lo mat.c
libtool: compile:  x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I. -O2 -pipe -march=native -c mat.c  -fPIC -DPIC -o .libs/mat.o
/bin/sh ../libtool  --tag=CC   --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I.    -I.    -O2 -pipe -march=native -c -o matvar_cell.lo matvar_cell.c
libtool: compile:  x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I. -O2 -pipe -march=native -c matvar_cell.c  -fPIC -DPIC -o .libs/matvar_cell.o
/bin/sh ../libtool  --tag=CC   --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I.    -I.    -O2 -pipe -march=native -c -o matvar_struct.lo matvar_struct.c
libtool: compile:  x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I. -O2 -pipe -march=native -c matvar_struct.c  -fPIC -DPIC -o .libs/matvar_struct.o
/bin/sh ../libtool  --tag=CC   --mode=link x86_64-gentoo-linux-musl-gcc -I.    -O2 -pipe -march=native -no-undefined -export-symbols ./matio.sym -version-info 10:2:1  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libmatio.la -rpath /usr/lib snprintf.lo endian.lo io.lo inflate.lo read_data.lo mat5.lo mat4.lo mat.lo matvar_cell.lo matvar_struct.lo  -lhdf5 -lz -lm 
libtool: link: echo "{ global:" > .libs/libmatio.ver
libtool: link:  cat ./matio.sym | sed -e "s/\(.*\)/\1;/" >> .libs/libmatio.ver
libtool: link:  echo "local: *; };" >> .libs/libmatio.ver
libtool: link:  x86_64-gentoo-linux-musl-gcc -shared  -fPIC -DPIC  .libs/snprintf.o .libs/endian.o .libs/io.o .libs/inflate.o .libs/read_data.o .libs/mat5.o .libs/mat4.o .libs/mat.o .libs/matvar_cell.o .libs/matvar_struct.o   -lhdf5 -lz -lm  -O2 -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0   -Wl,-soname -Wl,libmatio.so.9 -Wl,-version-script -Wl,.libs/libmatio.ver -o .libs/libmatio.so.9.1.2
libtool: link: (cd ".libs" && rm -f "libmatio.so.9" && ln -s "libmatio.so.9.1.2" "libmatio.so.9")
libtool: link: (cd ".libs" && rm -f "libmatio.so" && ln -s "libmatio.so.9.1.2" "libmatio.so")
libtool: link: ( cd ".libs" && rm -f "libmatio.la" && ln -s "../libmatio.la" "libmatio.la" )
make[2]: Leaving directory '/var/tmp/portage/sci-libs/matio-1.5.17/work/matio-1.5.17/src'
make[1]: Leaving directory '/var/tmp/portage/sci-libs/matio-1.5.17/work/matio-1.5.17/src'
Making all in getopt
make[1]: Entering directory '/var/tmp/portage/sci-libs/matio-1.5.17/work/matio-1.5.17/getopt'
/bin/sh ../libtool  --tag=CC   --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../src    -DREPLACE_GETOPT=1 -O2 -pipe -march=native -c -o libgetopt_la-getopt_long.lo `test -f 'getopt_long.c' || echo './'`getopt_long.c
libtool: compile:  x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../src -DREPLACE_GETOPT=1 -O2 -pipe -march=native -c getopt_long.c  -fPIC -DPIC -o .libs/libgetopt_la-getopt_long.o
getopt_long.c:60:13: fatal error: sys/cdefs.h: No such file or directory
   60 | #   include <sys/cdefs.h>
      |             ^~~~~~~~~~~~~
compilation terminated.
make[1]: *** [Makefile:393: libgetopt_la-getopt_long.lo] Error 1
make[1]: Leaving directory '/var/tmp/portage/sci-libs/matio-1.5.17/work/matio-1.5.17/getopt'
make: *** [Makefile:492: all-recursive] Error 1
 * ERROR: sci-libs/matio-1.5.17::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-libs/matio-1.5.17::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-libs/matio-1.5.17::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-libs:matio-1.5.17:20200404-220251.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-libs/matio-1.5.17/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-libs/matio-1.5.17/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-libs/matio-1.5.17/work/matio-1.5.17'
 * S: '/var/tmp/portage/sci-libs/matio-1.5.17/work/matio-1.5.17'