Go to:
Gentoo Home
Documentation
Forums
Lists
Bugs
Planet
Store
Wiki
Get Gentoo!
Gentoo's Bugzilla – Attachment 630048 Details for
Bug 716208
sci-chemistry/openbabel-perl-2.4.1 : -- Configuring incomplete, errors occurred!
Home
|
New
–
[Ex]
|
Browse
|
Search
|
Privacy Policy
|
[?]
|
Reports
|
Requests
|
Help
|
New Account
|
Log In
[x]
|
Forgot Password
Login:
[x]
sci-chemistry:openbabel-perl-2.4.1:20200404-171528.log
sci-chemistry:openbabel-perl-2.4.1:20200404-171528.log (text/plain), 9.58 KB, created by
Toralf Förster
on 2020-04-04 17:32:24 UTC
(
hide
)
Description:
sci-chemistry:openbabel-perl-2.4.1:20200404-171528.log
Filename:
MIME Type:
Creator:
Toralf Förster
Created:
2020-04-04 17:32:24 UTC
Size:
9.58 KB
patch
obsolete
> * Package: sci-chemistry/openbabel-perl-2.4.1 > * Repository: gentoo > * Maintainer: sci-chemistry@gentoo.org > * USE: abi_x86_64 amd64 elibc_musl kernel_linux userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>>> Unpacking source... >>>> Unpacking openbabel-2.4.1.tar.gz to /var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work >>>> Source unpacked in /var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work >>>> Preparing source in /var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-2.4.1 ... > * Applying openbabel-perl-2.3.2-gcc-6_and_7-backport.patch ... > [ ok ] > * Hardcoded definition(s) removed in CMakeLists.txt: > * set(CMAKE_BUILD_TYPE RelWithDebInfo) >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-2.4.1 ... >>>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build" >cmake -C /var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_INSTALL_RPATH= -DBINDINGS_ONLY=ON -DBABEL_SYSTEM_LIBRARY=/usr/lib/libopenbabel.so -DOB_MODULE_PATH=/usr/lib/openbabel/2.4.1 -DLIB_INSTALL_DIR=/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/image///usr/lib/perl5/vendor_perl/5.30.1/x86_64-linux -DPERL_BINDINGS=ON -DRUN_SWIG=ON -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/gentoo_toolchain.cmake /var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-2.4.1 >loading initial cache file /var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/gentoo_common_config.cmake >-- The C compiler identification is GNU 9.3.0 >-- The CXX compiler identification is GNU 9.3.0 >-- Check for working C compiler: /usr/bin/x86_64-gentoo-linux-musl-gcc >-- Check for working C compiler: /usr/bin/x86_64-gentoo-linux-musl-gcc - works >-- Detecting C compiler ABI info >-- Detecting C compiler ABI info - done >-- Detecting C compile features >-- Detecting C compile features - done >-- Check for working CXX compiler: /usr/bin/x86_64-gentoo-linux-musl-g++ >-- Check for working CXX compiler: /usr/bin/x86_64-gentoo-linux-musl-g++ - works >-- Detecting CXX compiler ABI info >-- Detecting CXX compiler ABI info - done >-- Detecting CXX compile features >-- Detecting CXX compile features - done >CMake Deprecation Warning at CMakeLists.txt:16 (cmake_policy): > The OLD behavior for policy CMP0005 will be removed from a future version > of CMake. > > The cmake-policies(7) manual explains that the OLD behaviors of all > policies are deprecated and that a policy should be set to OLD only under > specific short-term circumstances. Projects should be ported to the NEW > behavior and not rely on setting a policy to OLD. > > >CMake Deprecation Warning at CMakeLists.txt:18 (cmake_policy): > The OLD behavior for policy CMP0042 will be removed from a future version > of CMake. > > The cmake-policies(7) manual explains that the OLD behaviors of all > policies are deprecated and that a policy should be set to OLD only under > specific short-term circumstances. Projects should be ported to the NEW > behavior and not rely on setting a policy to OLD. > > >-- Using included inchi library. >-- Found LibXml2: /usr/lib/libxml2.so (found version "2.9.9") >-- Found ZLIB: /usr/lib/libz.so (found version "1.2.11") >-- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) >-- Looking for conio.h >-- Looking for conio.h - not found >-- Looking for sys/time.h >-- Looking for sys/time.h - found >-- Looking for time.h >-- Looking for time.h - found >-- Looking for strings.h >-- Looking for strings.h - found >-- Looking for rpc/xdr.h >-- Looking for rpc/xdr.h - not found >-- Looking for regex.h >-- Looking for regex.h - found >-- Looking for C++ include sstream >-- Looking for C++ include sstream - found >-- Looking for rint >-- Looking for rint - found >-- Looking for snprintf >-- Looking for snprintf - found >-- Looking for sranddev >-- Looking for sranddev - not found >-- Looking for strcasecmp >-- Looking for strcasecmp - found >-- Looking for strncasecmp >-- Looking for strncasecmp - found >-- Looking for dlopen in dl >-- Looking for dlopen in dl - found >-- Looking for sys/types.h >-- Looking for sys/types.h - found >-- Looking for stdint.h >-- Looking for stdint.h - found >-- Looking for stddef.h >-- Looking for stddef.h - found >-- Check size of clock_t >-- Check size of clock_t - done >CMake Error at cmake/modules/MacroEnsureVersion.cmake:76 (MATH): > MATH cannot parse the expression: "x86_649*10000 + x86_643*100 + x86_640": > syntax error, unexpected exp_NUMBER, expecting $end (8). >Call Stack (most recent call first): > cmake/modules/MacroEnsureVersion.cmake:95 (NORMALIZE_VERSION) > CMakeLists.txt:248 (macro_ensure_version) > > >CMake Error at cmake/modules/MacroEnsureVersion.cmake:76 (MATH): > MATH cannot parse the expression: "x86_649*10000 + x86_643*100 + x86_640": > syntax error, unexpected exp_NUMBER, expecting $end (8). >Call Stack (most recent call first): > cmake/modules/MacroEnsureVersion.cmake:95 (NORMALIZE_VERSION) > CMakeLists.txt:249 (macro_ensure_version) > > >CMake Error at cmake/modules/MacroEnsureVersion.cmake:76 (MATH): > MATH cannot parse the expression: "x86_649*10000 + x86_643*100 + x86_640": > syntax error, unexpected exp_NUMBER, expecting $end (8). >Call Stack (most recent call first): > cmake/modules/MacroEnsureVersion.cmake:95 (NORMALIZE_VERSION) > CMakeLists.txt:250 (macro_ensure_version) > > >-- Performing Test SCANDIR_NEEDS_CONST >-- Performing Test SCANDIR_NEEDS_CONST - Failed >-- Performing Test HAVE_GCC_VISIBILITY >-- Performing Test HAVE_GCC_VISIBILITY - Success >-- Checking available shared pointer... >-- Performing Test HAVE_STD_SHARED_PTR >-- Performing Test HAVE_STD_SHARED_PTR - Success >-- Performing Test HAVE_STD_TR1_SHARED_PTR >-- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed >-- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER >-- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Success >-- Use std::shared_ptr in memory >-- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") >-- Found PkgConfig: x86_64-gentoo-linux-musl-pkg-config (found version "1.6.3") >-- Checking for module 'cairo' >-- Found cairo, version 1.16.0 >-- Found Cairo: /usr/lib/libcairo.so >-- Cairo found. PNG output will be supported. >-- Looking for getopt >-- Looking for getopt - found >-- Attempting to build the GUI >-- wxWidgets not found => GUI will not be built >-- Found PythonInterp: /usr/bin/python (found version "3.8.2") >-- Found SWIG: /usr/bin/swig (found version "4.0.0") >-- Found SWIG: /usr/bin/swig (found suitable version "4.0.0", minimum required is "2.0") >CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:272 (message): > The package name passed to `find_package_handle_standard_args` (Perl) does > not match the name of the calling package (PerlLibs). This can lead to > problems in calling code that expects `find_package` result variables > (e.g., `_FOUND`) to follow a certain pattern. >Call Stack (most recent call first): > /usr/share/cmake/Modules/FindPerl.cmake:76 (FIND_PACKAGE_HANDLE_STANDARD_ARGS) > /usr/share/cmake/Modules/FindPerlLibs.cmake:48 (include) > scripts/CMakeLists.txt:295 (find_package) >This warning is for project developers. Use -Wno-dev to suppress it. > >-- Found Perl: /usr/bin/perl (found version "5.30.1") >-- Found PerlLibs: /usr/lib/libperl.so.5.30.1 (found version "5.30.1") >-- Perl bindings will be compiled >-- <<< Gentoo configuration >>> >Build type Gentoo >Install path /usr >Compiler flags: >C -O2 -pipe -march=native >C++ -O2 -pipe -march=native >Linker flags: >Executable -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 >Module -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 >Shared -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 > >-- Configuring incomplete, errors occurred! >See also "/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeOutput.log". >See also "/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeError.log". > * ERROR: sci-chemistry/openbabel-perl-2.4.1::gentoo failed (configure phase): > * cmake failed > * > * Call stack: > * ebuild.sh, line 125: Called src_configure > * environment, line 3298: Called cmake-utils_src_configure > * environment, line 882: Called die > * The specific snippet of code: > * "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed"; > * > * If you need support, post the output of `emerge --info '=sci-chemistry/openbabel-perl-2.4.1::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-chemistry/openbabel-perl-2.4.1::gentoo'`. > * The complete build log is located at '/var/log/portage/sci-chemistry:openbabel-perl-2.4.1:20200404-171528.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/temp/environment'. > * Working directory: '/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build' > * S: '/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-2.4.1'
You cannot view the attachment while viewing its details because your browser does not support IFRAMEs.
View the attachment on a separate page
.
View Attachment As Raw
Actions:
View
Attachments on
bug 716208
:
630034
|
630036
|
630038
|
630040
|
630042
|
630044
|
630046
| 630048 |
630050