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Gentoo's Bugzilla – Attachment 630036 Details for
Bug 716208
sci-chemistry/openbabel-perl-2.4.1 : -- Configuring incomplete, errors occurred!
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CMakeError.log
CMakeError.log (text/plain), 8.99 KB, created by
Toralf Förster
on 2020-04-04 17:32:07 UTC
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hide
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Description:
CMakeError.log
Filename:
MIME Type:
Creator:
Toralf Förster
Created:
2020-04-04 17:32:07 UTC
Size:
8.99 KB
patch
obsolete
>Determining if the include file conio.h exists failed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/gmake cmTC_59d7c/fast && /usr/bin/gmake -f CMakeFiles/cmTC_59d7c.dir/build.make CMakeFiles/cmTC_59d7c.dir/build >gmake[1]: Entering directory '/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp' >Building C object CMakeFiles/cmTC_59d7c.dir/CheckIncludeFile.c.o >/usr/bin/x86_64-gentoo-linux-musl-gcc -DNDEBUG -O2 -pipe -march=native -o CMakeFiles/cmTC_59d7c.dir/CheckIncludeFile.c.o -c /var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp/CheckIncludeFile.c >/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp/CheckIncludeFile.c:1:10: fatal error: conio.h: No such file or directory > 1 | #include <conio.h> > | ^~~~~~~~~ >compilation terminated. >gmake[1]: *** [CMakeFiles/cmTC_59d7c.dir/build.make:83: CMakeFiles/cmTC_59d7c.dir/CheckIncludeFile.c.o] Error 1 >gmake[1]: Leaving directory '/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp' >gmake: *** [Makefile:138: cmTC_59d7c/fast] Error 2 > > > >Determining if the include file rpc/xdr.h exists failed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/gmake cmTC_eed7a/fast && /usr/bin/gmake -f CMakeFiles/cmTC_eed7a.dir/build.make CMakeFiles/cmTC_eed7a.dir/build >gmake[1]: Entering directory '/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp' >Building C object CMakeFiles/cmTC_eed7a.dir/CheckIncludeFile.c.o >/usr/bin/x86_64-gentoo-linux-musl-gcc -DNDEBUG -O2 -pipe -march=native -o CMakeFiles/cmTC_eed7a.dir/CheckIncludeFile.c.o -c /var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp/CheckIncludeFile.c >/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp/CheckIncludeFile.c:1:10: fatal error: rpc/xdr.h: No such file or directory > 1 | #include <rpc/xdr.h> > | ^~~~~~~~~~~ >compilation terminated. >gmake[1]: *** [CMakeFiles/cmTC_eed7a.dir/build.make:83: CMakeFiles/cmTC_eed7a.dir/CheckIncludeFile.c.o] Error 1 >gmake[1]: Leaving directory '/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp' >gmake: *** [Makefile:138: cmTC_eed7a/fast] Error 2 > > > >Determining if the sranddev exist failed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/gmake cmTC_62065/fast && /usr/bin/gmake -f CMakeFiles/cmTC_62065.dir/build.make CMakeFiles/cmTC_62065.dir/build >gmake[1]: Entering directory '/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp' >Building C object CMakeFiles/cmTC_62065.dir/CheckSymbolExists.c.o >/usr/bin/x86_64-gentoo-linux-musl-gcc -DNDEBUG -O2 -pipe -march=native -o CMakeFiles/cmTC_62065.dir/CheckSymbolExists.c.o -c /var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp/CheckSymbolExists.c >/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp/CheckSymbolExists.c: In function âmainâ: >/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp/CheckSymbolExists.c:8:19: error: âsranddevâ undeclared (first use in this function) > 8 | return ((int*)(&sranddev))[argc]; > | ^~~~~~~~ >/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp/CheckSymbolExists.c:8:19: note: each undeclared identifier is reported only once for each function it appears in >gmake[1]: *** [CMakeFiles/cmTC_62065.dir/build.make:83: CMakeFiles/cmTC_62065.dir/CheckSymbolExists.c.o] Error 1 >gmake[1]: Leaving directory '/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp' >gmake: *** [Makefile:138: cmTC_62065/fast] Error 2 > > >File /var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp/CheckSymbolExists.c: >/* */ >#include <stdlib.h> > >int main(int argc, char** argv) >{ > (void)argv; >#ifndef sranddev > return ((int*)(&sranddev))[argc]; >#else > (void)argc; > return 0; >#endif >} >Performing C SOURCE FILE Test SCANDIR_NEEDS_CONST failed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/gmake cmTC_b2443/fast && /usr/bin/gmake -f CMakeFiles/cmTC_b2443.dir/build.make CMakeFiles/cmTC_b2443.dir/build >gmake[1]: Entering directory '/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp' >Building C object CMakeFiles/cmTC_b2443.dir/src.c.o >/usr/bin/x86_64-gentoo-linux-musl-gcc -DNDEBUG -O2 -pipe -march=native -DSCANDIR_NEEDS_CONST -Werror -o CMakeFiles/cmTC_b2443.dir/src.c.o -c /var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp/src.c >/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp/src.c: In function âmainâ: >/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp/src.c:7:46: error: passing argument 3 of âscandirâ from incompatible pointer type [-Werror=incompatible-pointer-types] > 7 | int count = scandir ("./", &entries_pp, matchFiles, 0); > | ^~~~~~~~~~ > | | > | int (*)(struct dirent *) >In file included from /var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp/src.c:3: >/usr/include/dirent.h:33:46: note: expected âint (*)(const struct dirent *)â but argument is of type âint (*)(struct dirent *)â > 33 | int scandir(const char *, struct dirent ***, int (*)(const struct dirent *), int (*)(const struct dirent **, const struct dirent **)); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >cc1: all warnings being treated as errors >gmake[1]: *** [CMakeFiles/cmTC_b2443.dir/build.make:83: CMakeFiles/cmTC_b2443.dir/src.c.o] Error 1 >gmake[1]: Leaving directory '/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp' >gmake: *** [Makefile:138: cmTC_b2443/fast] Error 2 > > >Source file was: > > #include <sys/types.h> > #include <dirent.h> > int main(){ > extern int matchFiles (struct dirent *entry_p); > struct dirent **entries_pp; > int count = scandir ("./", &entries_pp, matchFiles, 0); > return count; > } > >Performing C++ SOURCE FILE Test HAVE_STD_TR1_SHARED_PTR failed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/gmake cmTC_436fa/fast && /usr/bin/gmake -f CMakeFiles/cmTC_436fa.dir/build.make CMakeFiles/cmTC_436fa.dir/build >gmake[1]: Entering directory '/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp' >Building CXX object CMakeFiles/cmTC_436fa.dir/src.cxx.o >/usr/bin/x86_64-gentoo-linux-musl-g++ -DNDEBUG -O2 -pipe -march=native -DHAVE_STD_TR1_SHARED_PTR -Werror -o CMakeFiles/cmTC_436fa.dir/src.cxx.o -c /var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp/src.cxx >/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp/src.cxx: In function âint main()â: >/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp/src.cxx:2:45: error: âstd::tr1â has not been declared > 2 | int main(){ std::tr1::shared_ptr<int> p; return 0; } > | ^~~ >/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp/src.cxx:2:61: error: expected primary-expression before âintâ > 2 | int main(){ std::tr1::shared_ptr<int> p; return 0; } > | ^~~ >gmake[1]: *** [CMakeFiles/cmTC_436fa.dir/build.make:83: CMakeFiles/cmTC_436fa.dir/src.cxx.o] Error 1 >gmake[1]: Leaving directory '/var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeTmp' >gmake: *** [Makefile:138: cmTC_436fa/fast] Error 2 > > >Source file was: >#include <memory> > int main(){ std::tr1::shared_ptr<int> p; return 0; }
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bug 716208
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