sci-biology:blat-34-r2:20200315-062816.log

sci-biology:blat-34-r2:20200315-062816.log (text/plain), 23.10 KB, created by Toralf Förster on 2020-03-15 09:32:43 UTC

 * Package:    sci-biology/blat-34-r2
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_musl kernel_linux userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking blatSrc34.zip to /var/tmp/portage/sci-biology/blat-34-r2/work
>>> Source unpacked in /var/tmp/portage/sci-biology/blat-34-r2/work
>>> Preparing source in /var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc ...
 * Applying blat-34-fix-build-system.patch ...
 [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc ...
make -j1 
make -C lib
make[1]: Entering directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/lib'
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o aliType.o -c aliType.c
aliType.c:5:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    5 | static char const rcsid[] = "$Id: aliType.c,v 1.4 2003/05/06 07:33:41 kate Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o apacheLog.o -c apacheLog.c
apacheLog.c:8:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    8 | static char const rcsid[] = "$Id: apacheLog.c,v 1.1 2005/09/03 02:07:40 kent Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o asParse.o -c asParse.c
asParse.c:8:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    8 | static char const rcsid[] = "$Id: asParse.c,v 1.6 2007/02/11 21:43:15 kent Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axt.o -c axt.c
axt.c:23:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   23 | static char const rcsid[] = "$Id: axt.c,v 1.47 2006/06/18 23:11:58 kate Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axtAffine.o -c axtAffine.c
axtAffine.c:10:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   10 | static char const rcsid[] = "$Id: axtAffine.c,v 1.7 2005/04/10 14:41:20 markd Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o base64.o -c base64.c
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bits.o -c bits.c
bits.c:9:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    9 | static char const rcsid[] = "$Id: bits.c,v 1.19 2006/02/28 05:40:46 markd Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o binRange.o -c binRange.c
binRange.c:16:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   16 | static char const rcsid[] = "$Id: binRange.c,v 1.20 2006/07/01 05:01:25 kent Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o blastOut.o -c blastOut.c
blastOut.c:9:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    9 | static char const rcsid[] = "$Id: blastOut.c,v 1.26 2006/03/10 17:43:36 angie Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o blastParse.o -c blastParse.c
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o boxClump.o -c boxClump.c
boxClump.c:9:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    9 | static char const rcsid[] = "$Id: boxClump.c,v 1.5 2005/01/10 00:11:34 kent Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o boxLump.o -c boxLump.c
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o browserGfx.o -c browserGfx.c
browserGfx.c:9:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    9 | static char const rcsid[] = "$Id: browserGfx.c,v 1.8 2006/05/08 09:43:31 aamp Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o cda.o -c cda.c
cda.c:14:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   14 | static char const rcsid[] = "$Id: cda.c,v 1.6 2003/05/06 07:33:41 kate Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chain.o -c chain.c
chain.c:11:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   11 | static char const rcsid[] = "$Id: chain.c,v 1.25 2007/02/19 18:29:32 kent Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainBlock.o -c chainBlock.c
chainBlock.c: In function ‘findBestPredecessors’:
chainBlock.c:290:16: warning: variable ‘bestLeaf’ set but not used [-Wunused-but-set-variable]
  290 | struct kdLeaf *bestLeaf = NULL;
      |                ^~~~~~~~
At top level:
chainBlock.c:12:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   12 | static char const rcsid[] = "$Id: chainBlock.c,v 1.17 2005/04/10 14:41:21 markd Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainConnect.o -c chainConnect.c
chainConnect.c:10:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   10 | static char const rcsid[] = "$Id: chainConnect.c,v 1.3 2005/08/07 23:25:26 baertsch Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainToAxt.o -c chainToAxt.c
chainToAxt.c:10:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   10 | static char const rcsid[] = "$Id: chainToAxt.c,v 1.4 2005/04/10 14:41:21 markd Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainToPsl.o -c chainToPsl.c
chainToPsl.c:11:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   11 | static char const rcsid[] = "$Id: chainToPsl.c,v 1.5 2005/04/10 14:41:21 markd Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o cheapcgi.o -c cheapcgi.c
cheapcgi.c: In function ‘cgiParseMultipart’:
cheapcgi.c:172:75: warning: variable ‘ct’ set but not used [-Wunused-but-set-variable]
  172 | har *cd = NULL, *cdMain = NULL, *cdName = NULL, *cdFileName = NULL, *ct = NULL;
      |                                                                      ^~

At top level:
cheapcgi.c:15:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   15 | static char const rcsid[] = "$Id: cheapcgi.c,v 1.85 2006/12/19 18:49:52 kent Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o codebias.o -c codebias.c
codebias.c: In function ‘codonFindFrame’:
codebias.c:105:8: warning: variable ‘logProbs’ set but not used [-Wunused-but-set-variable]
  105 | double logProbs[3];
      |        ^~~~~~~~
At top level:
codebias.c:11:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   11 | static char const rcsid[] = "$Id: codebias.c,v 1.6 2005/04/10 14:41:21 markd Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o colHash.o -c colHash.c
colHash.c:8:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    8 | static char const rcsid[] = "$Id: colHash.c,v 1.3 2003/05/06 07:33:41 kate Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o common.o -c common.c
common.c:12:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   12 | static char const rcsid[] = "$Id: common.c,v 1.108 2007/03/30 00:12:11 markd Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o correlate.o -c correlate.c
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dgRange.o -c dgRange.c
dgRange.c:8:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    8 | static char const rcsid[] = "$Id: dgRange.c,v 1.3 2003/05/06 07:33:42 kate Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o diGraph.o -c diGraph.c
diGraph.c:7:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    7 | static char const rcsid[] = "$Id: diGraph.c,v 1.9 2005/08/17 03:01:29 galt Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dlist.o -c dlist.c
dlist.c:8:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    8 | static char const rcsid[] = "$Id: dlist.c,v 1.11 2005/07/04 18:44:09 markd Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dnaLoad.o -c dnaLoad.c
dnaLoad.c:10:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   10 | static char const rcsid[] = "$Id: dnaLoad.c,v 1.8 2005/03/28 17:21:28 hiram Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dnaMarkov.o -c dnaMarkov.c
dnaMarkov.c:10:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   10 | static char const rcsid[] = "$Id: dnaMarkov.c,v 1.4 2005/04/10 14:41:22 markd Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dnaseq.o -c dnaseq.c
dnaseq.c:12:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   12 | static char const rcsid[] = "$Id: dnaseq.c,v 1.19 2005/11/10 03:40:34 kent Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dnautil.o -c dnautil.c
dnautil.c: In function ‘findHeadPolyTMaybeMask’:
dnautil.c:913:5: warning: variable ‘pastPoly’ set but not used [-Wunused-but-set-variable]
  913 | int pastPoly = 0;
      |     ^~~~~~~~
At top level:
dnautil.c:18:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   18 | static char const rcsid[] = "$Id: dnautil.c,v 1.49 2007/03/14 04:54:55 kent Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dnaMotif.o -c dnaMotif.c
dnaMotif.c:12:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   12 | static char const rcsid[] = "$Id: dnaMotif.c,v 1.4 2006/09/14 21:08:24 braney Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dtdParse.o -c dtdParse.c
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dystring.o -c dystring.c
dystring.c:9:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    9 | static char const rcsid[] = "$Id: dystring.c,v 1.22 2006/02/02 16:24:24 kent Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o emblParse.o -c emblParse.c
emblParse.c:52:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   52 | static char const rcsid[] = "$Id: emblParse.c,v 1.3 2003/05/06 07:33:42 kate Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o errabort.o -c errabort.c
errabort.c:18:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   18 | static char const rcsid[] = "$Id: errabort.c,v 1.13 2004/11/10 00:10:50 markd Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o errCatch.o -c errCatch.c
errCatch.c:22:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   22 | static char const rcsid[] = "$Id: errCatch.c,v 1.2 2006/08/10 01:02:47 kent Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fa.o -c fa.c
fa.c:15:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   15 | static char const rcsid[] = "$Id: fa.c,v 1.37 2007/02/20 18:50:21 kent Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ffAli.o -c ffAli.c
ffAli.c:12:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   12 | static char const rcsid[] = "$Id: ffAli.c,v 1.9 2004/02/13 09:33:32 kent Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ffScore.o -c ffScore.c
ffScore.c:8:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    8 | static char const rcsid[] = "$Id: ffScore.c,v 1.5 2003/10/21 22:06:32 kent Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o filePath.o -c filePath.c
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fixColor.o -c fixColor.c
fixColor.c:5:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    5 | static char const rcsid[] = "$Id: fixColor.c,v 1.3 2003/05/06 07:33:42 kate Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o flydna.o -c flydna.c
flydna.c:15:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   15 | static char const rcsid[] = "$Id: flydna.c,v 1.4 2003/05/06 07:33:42 kate Exp $";
      |                   ^~~~~
x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fof.o -c fof.c
fof.c: In function ‘cmpOnFilePos’:
fof.c:339:16: error: arithmetic on pointer to an incomplete type
  339 | int dif = a->f - b->f;
      |                ^
fof.c: In function ‘fofMake’:
fof.c:481:16: warning: variable ‘itemSize’ set but not used [-Wunused-but-set-variable]
  481 | int i, fileIx, itemSize;
      |                ^~~~~~~~
At top level:
fof.c:10:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   10 | static char const rcsid[] = "$Id: fof.c,v 1.7 2006/03/10 17:43:36 angie Exp $";
      |                   ^~~~~
make[1]: *** [../inc/common.mk:53: fof.o] Error 1
make[1]: Leaving directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/lib'
make: *** [makefile:2: all] Error 2
 * ERROR: sci-biology/blat-34-r2::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-biology/blat-34-r2::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-biology/blat-34-r2::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-biology:blat-34-r2:20200315-062816.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/blat-34-r2/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-biology/blat-34-r2/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc'
 * S: '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc'