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Gentoo's Bugzilla – Attachment 617082 Details for
Bug 711540
sci-libs/cholmod-3.0.13 : configure: error: Could not find ccolamd library
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sci-libs:cholmod-3.0.13:20200304-043129.log
sci-libs:cholmod-3.0.13:20200304-043129.log (text/plain), 9.93 KB, created by
Toralf Förster
on 2020-03-04 17:59:41 UTC
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Description:
sci-libs:cholmod-3.0.13:20200304-043129.log
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Creator:
Toralf Förster
Created:
2020-03-04 17:59:41 UTC
Size:
9.93 KB
patch
obsolete
> * Package: sci-libs/cholmod-3.0.13 > * Repository: gentoo > * Maintainer: sci@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux lapack matrixops modify partition userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>>> Unpacking source... >>>> Unpacking cholmod-3.0.13.tar.bz2 to /var/tmp/portage/sci-libs/cholmod-3.0.13/work >>>> Source unpacked in /var/tmp/portage/sci-libs/cholmod-3.0.13/work >>>> Preparing source in /var/tmp/portage/sci-libs/cholmod-3.0.13/work/cholmod-3.0.13 ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-libs/cholmod-3.0.13/work/cholmod-3.0.13 ... > * econf: updating cholmod-3.0.13/config/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating cholmod-3.0.13/config/config.guess with /usr/share/gnuconfig/config.guess >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/cholmod-3.0.13 --htmldir=/usr/share/doc/cholmod-3.0.13/html --with-sysroot=/ --libdir=/usr/lib64 --with-blas=-lblas --with-lapack=-llapack --without-doc --disable-static --with-modify --with-matrixops --with-partition --with-camd --with-supernodal --without-cuda >checking for a BSD-compatible install... /usr/lib/portage/python3.6/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make supports nested variables... yes >checking whether make supports nested variables... (cached) yes >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking how to print strings... printf >checking whether make supports the include directive... yes (GNU style) >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B >checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... / >checking for a working dd... /bin/dd >checking how to truncate binary pipes... /bin/dd bs=4096 count=1 >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... mt >checking if mt is a manifest tool... no >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking for x86_64-pc-linux-gnu-gcc... (cached) x86_64-pc-linux-gnu-gcc >checking whether we are using the GNU C compiler... (cached) yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... (cached) yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... (cached) yes >checking dependency style of x86_64-pc-linux-gnu-gcc... (cached) none >checking float.h usability... yes >checking float.h presence... yes >checking for float.h... yes >checking limits.h usability... yes >checking limits.h presence... yes >checking for limits.h... yes >checking stddef.h usability... yes >checking stddef.h presence... yes >checking for stddef.h... yes >checking for stdlib.h... (cached) yes >checking for string.h... (cached) yes >checking for uid_t in sys/types.h... yes >checking for int32_t... yes >checking for mode_t... yes >checking for off_t... yes >checking for pid_t... yes >checking for size_t... yes >checking for ssize_t... yes >checking whether struct tm is in sys/time.h or time.h... time.h >checking for struct tm.tm_zone... yes >checking for working alloca.h... yes >checking for alloca... yes >checking for error_at_line... yes >checking for stdlib.h... (cached) yes >checking for GNU libc compatible malloc... yes >checking whether time.h and sys/time.h may both be included... yes >checking for sys/time.h... yes >checking for unistd.h... (cached) yes >checking for alarm... yes >checking for working mktime... yes >checking for stdlib.h... (cached) yes >checking for GNU libc compatible realloc... yes >checking for working strtod... yes >checking for atexit... yes >checking for localtime_r... yes >checking for mblen... yes >checking for putenv... yes >checking for realpath... yes >checking for rpmatch... yes >checking for select... yes >checking for setenv... yes >checking for stime... no >checking for strtol... yes >checking for strtoul... yes >checking for strtoull... yes >checking for tzset... yes >checking for sqrt in -lm... yes >checking for clock_gettime in -lrt... yes >checking for x86_64-pc-linux-gnu-pkg-config... /usr/bin/x86_64-pc-linux-gnu-pkg-config >checking pkg-config is at least version 0.9.0... yes >checking for suitesparseconfig... yes >checking SuiteSparse_config.h usability... yes >checking SuiteSparse_config.h presence... yes >checking for SuiteSparse_config.h... yes >checking for SuiteSparse_malloc in -lsuitesparseconfig... yes >checking whether to build user guide... no >checking for amd... yes >checking amd.h usability... yes >checking amd.h presence... yes >checking for amd.h... yes >checking for amd_info in -lamd... yes >checking for colamd... yes >checking colamd.h usability... yes >checking colamd.h presence... yes >checking for colamd.h... yes >checking for colamd_recommended in -lcolamd... yes >checking for ccolamd... yes >checking ccolamd.h usability... yes >checking ccolamd.h presence... yes >checking for ccolamd.h... yes >checking for ccolamd_report in -lccolamd... no >configure: error: Could not find ccolamd library > >!!! Please attach the following file when seeking support: >!!! /var/tmp/portage/sci-libs/cholmod-3.0.13/work/cholmod-3.0.13/config.log > * ERROR: sci-libs/cholmod-3.0.13::gentoo failed (configure phase): > * econf failed > * > * Call stack: > * ebuild.sh, line 125: Called src_configure > * environment, line 1102: Called econf '--with-blas=-lblas ' '--with-lapack=-llapack ' '--without-doc' '--disable-static' '--with-modify' '--with-matrixops' '--with-partition' '--with-camd' '--with-supernodal' '--without-cuda' > * phase-helpers.sh, line 681: Called __helpers_die 'econf failed' > * isolated-functions.sh, line 112: Called die > * The specific snippet of code: > * die "$@" > * > * If you need support, post the output of `emerge --info '=sci-libs/cholmod-3.0.13::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-libs/cholmod-3.0.13::gentoo'`. > * The complete build log is located at '/var/log/portage/sci-libs:cholmod-3.0.13:20200304-043129.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-libs/cholmod-3.0.13/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-libs/cholmod-3.0.13/temp/environment'. > * Working directory: '/var/tmp/portage/sci-libs/cholmod-3.0.13/work/cholmod-3.0.13' > * S: '/var/tmp/portage/sci-libs/cholmod-3.0.13/work/cholmod-3.0.13'
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bug 711540
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