sci-chemistry:mpqc-2.3.1-r4:20200225-111258.log

sci-chemistry:mpqc-2.3.1-r4:20200225-111258.log (text/plain), 17.78 KB, created by Toralf Förster on 2020-02-25 18:46:52 UTC

 * Package:    sci-chemistry/mpqc-2.3.1-r4
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking mpqc-2.3.1.tar.bz2 to /var/tmp/portage/sci-chemistry/mpqc-2.3.1-r4/work
>>> Source unpacked in /var/tmp/portage/sci-chemistry/mpqc-2.3.1-r4/work
>>> Preparing source in /var/tmp/portage/sci-chemistry/mpqc-2.3.1-r4/work/mpqc-2.3.1 ...
 * Applying mpqc-2.3.1-as-needed.patch ...
 [ ok ]
 * Applying mpqc-2.3.1-respect-ldflags.patch ...
 [ ok ]
 * Applying mpqc-2.3.1-test-failure-hack.patch ...
 [ ok ]
 * Applying mpqc-2.3.1-blas.patch ...
 [ ok ]
 * Applying mpqc-2.3.1-wformat-security.patch ...
 [ ok ]
 * Running eautoreconf in '/var/tmp/portage/sci-chemistry/mpqc-2.3.1-r4/work/mpqc-2.3.1' ...
 * Running libtoolize --install --copy --force ...
 [ ok ]
 * Running aclocal ...
 [ ok ]
 * Running autoconf --force ...
 [ ok ]
 * Running autoheader ...
 [ !! ]
 * Running elibtoolize in: mpqc-2.3.1/
 * Running elibtoolize in: mpqc-2.3.1/bin/
 *   Applying portage/1.2.0 patch ...
 *   Applying sed/1.5.6 patch ...
 *   Applying as-needed/2.4.3 patch ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-chemistry/mpqc-2.3.1-r4/work/mpqc-2.3.1 ...
 * econf: updating mpqc-2.3.1/bin/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating mpqc-2.3.1/bin/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --docdir=/usr/share/doc/mpqc-2.3.1-r4 --htmldir=/usr/share/doc/mpqc-2.3.1-r4/html --libdir=/usr/lib64 --disable-threads --disable-parallel --disable-static
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/lib/portage/python3.6/ebuild-helpers/xattr/install -c
checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking for g++... x86_64-pc-linux-gnu-g++
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
checking for x86_64-pc-linux-gnu-g77... no
checking for x86_64-pc-linux-gnu-xlf... no
checking for x86_64-pc-linux-gnu-f77... no
checking for x86_64-pc-linux-gnu-frt... no
checking for x86_64-pc-linux-gnu-pgf77... no
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checking for x86_64-pc-linux-gnu-epcf90... no
checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes
checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... -v
checking for Fortran 77 libraries of x86_64-pc-linux-gnu-gfortran...  -L/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../.. -lgfortran -lm -lquadmath
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
checking for ar... ar
checking for perl... perl
checking for wish... /usr/bin/wish
checking for dot... NO
checking for miscellaneous flags... none
checking for special optimization options... "none"
checking for C++ cpu tuning flag... -mcpu
checking for C cpu tuning flag... -mcpu
checking for special architecture options... "none"
checking "for C++ typename keyword"... "yes"
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
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checking for memory.h... yes
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checking iostream usability... yes
checking iostream presence... yes
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checking iostream name... iostream
checking "for namespace std"... "yes"
checking "for GNU libc++-v3 prerelease bug"... "no"
checking fp.h usability... no
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checking endian.h usability... yes
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checking termios.h usability... yes
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checking return type of signal handlers... void
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checking for SYSV IPC... yes
checking if semctl requires semun... no
checking if fortran compiler works... yes
checking fortran symbols... lowercase with underscore
checking for x86_64-pc-linux-gnu-pkg-config... /usr/bin/x86_64-pc-linux-gnu-pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for BLAS... yes
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checking for sB_init in -lsB_BLAS... no
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checking template instantiation flags... none
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checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B
checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-pc-linux-gnu-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for x86_64-pc-linux-gnu-ar... (cached) ar
checking for archiver @FILE support... @
checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip
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checking for gawk... gawk
checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for x86_64-pc-linux-gnu-mt... no
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... (cached) yes
checking for objdir... .libs
checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC
checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes
checking if x86_64-pc-linux-gnu-gcc static flag -static works... no
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC -DPIC
checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes
checking if x86_64-pc-linux-gnu-g++ static flag -static works... no
checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-gfortran static flag -static works... no
checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
Skipping ./src/Makefile
Skipping ./src/lib/util/Makefile
Skipping ./src/lib/util/state/Makefile
Skipping ./src/lib/util/render/Makefile
Skipping ./src/lib/util/ref/Makefile
Skipping ./src/lib/util/psi3/Makefile
Skipping ./src/lib/util/psi3/libpsio/Makefile
Skipping ./src/lib/util/options/Makefile
Skipping ./src/lib/util/misc/Makefile
Skipping ./src/lib/util/keyval/Makefile
Skipping ./src/lib/util/group/Makefile
Skipping ./src/lib/util/container/Makefile
Skipping ./src/lib/util/class/Makefile
Skipping ./src/lib/math/symmetry/Makefile
Skipping ./src/lib/math/scmat/Makefile
Skipping ./src/lib/math/optimize/Makefile
Skipping ./src/lib/math/Makefile
Skipping ./src/lib/math/isosurf/Makefile
Skipping ./src/lib/Makefile
Skipping ./src/lib/chemistry/solvent/Makefile
Skipping ./src/lib/chemistry/molecule/Makefile
Skipping ./src/lib/chemistry/Makefile
Skipping ./src/lib/chemistry/qc/Makefile
Skipping ./src/lib/chemistry/qc/wfn/Makefile
Skipping ./src/lib/chemistry/qc/scf/Makefile
Skipping ./src/lib/chemistry/qc/psi/Makefile
Skipping ./src/lib/chemistry/qc/oint3/Makefile
Skipping ./src/lib/chemistry/qc/mbptr12/Makefile
Skipping ./src/lib/chemistry/qc/mbpt/Makefile
Skipping ./src/lib/chemistry/qc/intv3/Makefile
Skipping ./src/lib/chemistry/qc/intcca/Makefile
Skipping ./src/lib/chemistry/qc/dft/Makefile
Skipping ./src/lib/chemistry/qc/cints/Makefile
Skipping ./src/lib/chemistry/qc/basis/Makefile
Skipping ./src/lib/chemistry/cca/Makefile
Skipping ./src/bin/scpr/Makefile
Skipping ./src/bin/scls/Makefile
Skipping ./src/bin/mpqc/Makefile
Skipping ./src/bin/mpqc/validate/Makefile
Skipping ./src/bin/Makefile
Skipping ./src/bin/molrender/Makefile
Skipping ./lib/perl/Makefile
Skipping ./lib/elisp/Makefile
Skipping ./lib/cca/Makefile
Skipping ./lib/basis/Makefile
Skipping ./lib/Makefile
Skipping ./doc/Makefile
Skipping ./bin/Makefile
Skipping ./Makefile
configure: creating ./config.status
config.status: creating lib/LocalMakefile
config.status: WARNING:  'lib/LocalMakefile.in' seems to ignore the --datarootdir setting
config.status: creating lib/cca/components.cca
config.status: creating bin/sc-config
config.status: creating bin/mkf77sym.pl
config.status: creating src/bin/mpqc/mpqcrun
config.status: creating src/bin/mpqc/ccarun
config.status: creating src/bin/mpqc/validate/makeccain.pl
config.status: creating doc/doxygen.cfg
config.status: creating doc/doxygen.man1.cfg
config.status: creating doc/doxygen.man3.cfg
config.status: creating src/lib/scconfig.h
config.status: executing libtool commands
sed: -e expression #1, char 82: unknown option to `s'
 * ERROR: sci-chemistry/mpqc-2.3.1-r4::gentoo failed (configure phase):
 *   (no error message)
 * 
 * Call stack:
 *     ebuild.sh, line 125:  Called src_configure
 *   environment, line 1391:  Called die
 * The specific snippet of code:
 *       sed -e "s:^CFLAGS =.*$:CFLAGS=${CFLAGS}:" -e "s:^FFLAGS =.*$:FFLAGS=${FFLAGS:- -O2}:" -e "s:^CXXFLAGS =.*$:CXXFLAGS=${CXXFLAGS}:" -i lib/LocalMakefile || die
 * 
 * If you need support, post the output of `emerge --info '=sci-chemistry/mpqc-2.3.1-r4::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-chemistry/mpqc-2.3.1-r4::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-chemistry:mpqc-2.3.1-r4:20200225-111258.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/mpqc-2.3.1-r4/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/mpqc-2.3.1-r4/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-chemistry/mpqc-2.3.1-r4/work/mpqc-2.3.1'
 * S: '/var/tmp/portage/sci-chemistry/mpqc-2.3.1-r4/work/mpqc-2.3.1'