sci-biology:newick-utils-1.6:20200206-084750.log

sci-biology:newick-utils-1.6:20200206-084750.log (text/plain), 25.17 KB, created by Toralf Förster on 2020-02-06 22:26:04 UTC

 * Package:    sci-biology/newick-utils-1.6
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking newick-utils-1.6.tar.gz to /var/tmp/portage/sci-biology/newick-utils-1.6/work
>>> Source unpacked in /var/tmp/portage/sci-biology/newick-utils-1.6/work
>>> Preparing source in /var/tmp/portage/sci-biology/newick-utils-1.6/work/newick-utils-1.6 ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/newick-utils-1.6/work/newick-utils-1.6 ...
 * econf: updating newick-utils-1.6/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating newick-utils-1.6/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --docdir=/usr/share/doc/newick-utils-1.6 --htmldir=/usr/share/doc/newick-utils-1.6/html --libdir=/usr/lib64
checking for a BSD-compatible install... /usr/lib/portage/python3.6/ebuild-helpers/xattr/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of x86_64-pc-linux-gnu-gcc... none
checking for bison... bison -y
checking for flex... flex
checking lex output file root... lex.yy
checking lex library... -lfl
checking whether yytext is a pointer... yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
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checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
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checking how to recognize dependent libraries... pass_all
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checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
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checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for ANSI C header files... yes
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checking for objdir... .libs
checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC
checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes
checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
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checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking for xmlParseMemory in -lxml2... yes
checking libxml/tree.h usability... yes
checking libxml/tree.h presence... yes
checking for libxml/tree.h... yes
checking libxml/parser.h usability... yes
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checking libxml/xpath.h usability... yes
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checking libguile.h usability... no
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checking lua.h usability... yes
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checking for library containing luaL_openlibs... -llua
configure: libguile missing (disabled).
checking for an ANSI C-conforming const... yes
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configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating tests/Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/newick-utils-1.6/work/newick-utils-1.6 ...
make -j1 
make  all-recursive
make[1]: Entering directory '/var/tmp/portage/sci-biology/newick-utils-1.6/work/newick-utils-1.6'
Making all in src
make[2]: Entering directory '/var/tmp/portage/sci-biology/newick-utils-1.6/work/newick-utils-1.6/src'
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c -o newick_parser.lo newick_parser.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c newick_parser.c  -fPIC -DPIC -o .libs/newick_parser.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c newick_parser.c -o newick_parser.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c -o newick_scanner.lo newick_scanner.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c newick_scanner.c  -fPIC -DPIC -o .libs/newick_scanner.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c newick_scanner.c -o newick_scanner.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c -o rnode.lo rnode.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c rnode.c  -fPIC -DPIC -o .libs/rnode.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c rnode.c -o rnode.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c -o list.lo list.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c list.c  -fPIC -DPIC -o .libs/list.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c list.c -o list.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c -o parser.lo parser.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c parser.c  -fPIC -DPIC -o .libs/parser.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c parser.c -o parser.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c -o link.lo link.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c link.c  -fPIC -DPIC -o .libs/link.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c link.c -o link.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c -o tree.lo tree.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c tree.c  -fPIC -DPIC -o .libs/tree.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c tree.c -o tree.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c -o nodemap.lo nodemap.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c nodemap.c  -fPIC -DPIC -o .libs/nodemap.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c nodemap.c -o nodemap.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c -o hash.lo hash.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c hash.c  -fPIC -DPIC -o .libs/hash.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c hash.c -o hash.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c -o rnode_iterator.lo rnode_iterator.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c rnode_iterator.c  -fPIC -DPIC -o .libs/rnode_iterator.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c rnode_iterator.c -o rnode_iterator.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c -o masprintf.lo masprintf.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c masprintf.c  -fPIC -DPIC -o .libs/masprintf.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c masprintf.c -o masprintf.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c -o to_newick.lo to_newick.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c to_newick.c  -fPIC -DPIC -o .libs/to_newick.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c to_newick.c -o to_newick.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c -o concat.lo concat.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c concat.c  -fPIC -DPIC -o .libs/concat.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c concat.c -o concat.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c -o lca.lo lca.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c lca.c  -fPIC -DPIC -o .libs/lca.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c lca.c -o lca.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c -o error.lo error.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c error.c  -fPIC -DPIC -o .libs/error.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -fno-common -c error.c -o error.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native -fno-common  -Wl,-O1 -Wl,--as-needed -o libnw.la -rpath /usr/lib64 newick_parser.lo newick_scanner.lo rnode.lo list.lo parser.lo link.lo tree.lo nodemap.lo hash.lo rnode_iterator.lo masprintf.lo to_newick.lo concat.lo lca.lo error.lo   -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -shared  -fPIC -DPIC  .libs/newick_parser.o .libs/newick_scanner.o .libs/rnode.o .libs/list.o .libs/parser.o .libs/link.o .libs/tree.o .libs/nodemap.o .libs/hash.o .libs/rnode_iterator.o .libs/masprintf.o .libs/to_newick.o .libs/concat.o .libs/lca.o .libs/error.o   -Wl,-rpath -Wl,/usr/lib64/ -Wl,-rpath -Wl,/usr/lib64/ /usr/lib64//liblua.so -ldl -lxml2 -lm  -O2 -march=native -Wl,-O1 -Wl,--as-needed   -Wl,-soname -Wl,libnw.so.0 -o .libs/libnw.so.0.0.0
libtool: link: (cd ".libs" && rm -f "libnw.so.0" && ln -s "libnw.so.0.0.0" "libnw.so.0")
libtool: link: (cd ".libs" && rm -f "libnw.so" && ln -s "libnw.so.0.0.0" "libnw.so")
libtool: link: x86_64-pc-linux-gnu-ar cru .libs/libnw.a  newick_parser.o newick_scanner.o rnode.o list.o parser.o link.o tree.o nodemap.o hash.o rnode_iterator.o masprintf.o to_newick.o concat.o lca.o error.o
libtool: link: x86_64-pc-linux-gnu-ranlib .libs/libnw.a
libtool: link: ( cd ".libs" && rm -f "libnw.la" && ln -s "../libnw.la" "libnw.la" )
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c indent.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c indent_lex.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native -fno-common  -Wl,-O1 -Wl,--as-needed -o nw_indent indent.o indent_lex.o  -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wl,-O1 -Wl,--as-needed -o nw_indent indent.o indent_lex.o  /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/ -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c display.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c canvas.c
In file included from /usr/include/string.h:494,
                 from canvas.c:32:
In function ‘strncpy’,
    inlined from ‘canvas_write’ at canvas.c:114:2:
/usr/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
canvas.c: In function ‘canvas_write’:
canvas.c:110:20: note: length computed here
  110 |  int text_length = strlen(text);
      |                    ^~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c text_graph.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c simple_node_pos.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c svg_graph.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c readline.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c node_pos_alloc.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c xml_utils.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c graph_common.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c svg_graph_ortho.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c svg_graph_radial.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native -fno-common  -Wl,-O1 -Wl,--as-needed -o nw_display display.o canvas.o text_graph.o simple_node_pos.o svg_graph.o readline.o node_pos_alloc.o xml_utils.o graph_common.o svg_graph_ortho.o svg_graph_radial.o -lm libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wl,-O1 -Wl,--as-needed -o .libs/nw_display display.o canvas.o text_graph.o simple_node_pos.o svg_graph.o readline.o node_pos_alloc.o xml_utils.o graph_common.o svg_graph_ortho.o svg_graph_radial.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c clade.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c subtree.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native -fno-common  -Wl,-O1 -Wl,--as-needed -o nw_clade clade.o subtree.o libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wl,-O1 -Wl,--as-needed -o .libs/nw_clade clade.o subtree.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c reroot.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native -fno-common  -Wl,-O1 -Wl,--as-needed -o nw_reroot reroot.o libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wl,-O1 -Wl,--as-needed -o .libs/nw_reroot reroot.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c rename.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native -fno-common  -Wl,-O1 -Wl,--as-needed -o nw_rename rename.o readline.o libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wl,-O1 -Wl,--as-needed -o .libs/nw_rename rename.o readline.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c condense.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native -fno-common  -Wl,-O1 -Wl,--as-needed -o nw_condense condense.o libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wl,-O1 -Wl,--as-needed -o .libs/nw_condense condense.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c support.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c node_set.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native -fno-common  -Wl,-O1 -Wl,--as-needed -o nw_support support.o node_set.o libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wl,-O1 -Wl,--as-needed -o .libs/nw_support support.o node_set.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c address_scanner.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c address_parser.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c tree_editor.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -fno-common -c enode.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native -fno-common  -Wl,-O1 -Wl,--as-needed -o nw_ed address_scanner.o address_parser.o tree_editor.o enode.o -lm libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wl,-O1 -Wl,--as-needed -o .libs/nw_ed address_scanner.o address_parser.o tree_editor.o enode.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: tree_editor.o:(.bss+0x8): multiple definition of `address_parser_status'; address_parser.o:(.bss+0x18): first defined here
collect2: error: ld returned 1 exit status
make[2]: *** [Makefile:502: nw_ed] Error 1
make[2]: Leaving directory '/var/tmp/portage/sci-biology/newick-utils-1.6/work/newick-utils-1.6/src'
make[1]: *** [Makefile:320: all-recursive] Error 1
make[1]: Leaving directory '/var/tmp/portage/sci-biology/newick-utils-1.6/work/newick-utils-1.6'
make: *** [Makefile:249: all] Error 2
 * ERROR: sci-biology/newick-utils-1.6::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-biology/newick-utils-1.6::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-biology/newick-utils-1.6::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-biology:newick-utils-1.6:20200206-084750.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/newick-utils-1.6/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-biology/newick-utils-1.6/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-biology/newick-utils-1.6/work/newick-utils-1.6'
 * S: '/var/tmp/portage/sci-biology/newick-utils-1.6/work/newick-utils-1.6'