* Package: sci-astronomy/montage-5.0 * Repository: gentoo * Maintainer: sci-astronomy@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>> Unpacking source... >>> Unpacking Montage_v5.0.tar.gz to /var/tmp/portage/sci-astronomy/montage-5.0/work >>> Source unpacked in /var/tmp/portage/sci-astronomy/montage-5.0/work >>> Preparing source in /var/tmp/portage/sci-astronomy/montage-5.0/work/Montage ... * Applying montage-4.1-fix_format_errors.patch ... [ ok ] * Applying montage-4.1-initdistdata.patch ... [ ok ] * Applying montage-5.0-fix_freetype_incude.patch ... [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-astronomy/montage-5.0/work/Montage ... >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-astronomy/montage-5.0/work/Montage ... make -j1 mkdir -p bin mkdir -p lib/include if test -d lib/src; then (cd lib/src; make); fi make[1]: Entering directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src' (cd cmd; make; make install) make[2]: Entering directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/cmd' x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=native -fno-common -I/usr/include/wcs -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -o cmd.o cmd.c rm -f libcmd.a x86_64-pc-linux-gnu-ar q libcmd.a cmd.o x86_64-pc-linux-gnu-ar: creating libcmd.a make[2]: Leaving directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/cmd' make[2]: Entering directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/cmd' cp libcmd.a ../.. cp cmd.h ../../include make[2]: Leaving directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/cmd' (cd coord; make; make install) make[2]: Entering directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/coord' x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/include/wcs -c -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I. -I../../include -c -o ccalc.o ccalc.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/include/wcs -c -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I. -I../../include -c -o parseCoordinateString.o parseCoordinateString.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/include/wcs -c -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I. -I../../include -c -o sexToDecimalDegree.o sexToDecimalDegree.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/include/wcs -c -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I. -I../../include -c -o decimalDegreeToSex.o decimalDegreeToSex.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/include/wcs -c -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I. -I../../include -c -o convertCoordinates.o convertCoordinates.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/include/wcs -c -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I. -I../../include -c -o convertBesselianJulian.o convertBesselianJulian.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/include/wcs -c -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I. -I../../include -c -o precessBesselian.o precessBesselian.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/include/wcs -c -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I. -I../../include -c -o precessJulian.o precessJulian.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/include/wcs -c -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I. -I../../include -c -o convertEclEqu.o convertEclEqu.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/include/wcs -c -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I. -I../../include -c -o convertEquGal.o convertEquGal.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/include/wcs -c -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I. -I../../include -c -o convertGalSgal.o convertGalSgal.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/include/wcs -c -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I. -I../../include -c -o computeFKCorrections.o computeFKCorrections.c rm -f libcoord.a x86_64-pc-linux-gnu-ar q libcoord.a ccalc.o parseCoordinateString.o sexToDecimalDegree.o decimalDegreeToSex.o convertCoordinates.o convertBesselianJulian.o precessBesselian.o precessJulian.o convertEclEqu.o convertEquGal.o convertGalSgal.o computeFKCorrections.o x86_64-pc-linux-gnu-ar: creating libcoord.a make[2]: Leaving directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/coord' make[2]: Entering directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/coord' cp libcoord.a ../.. cp coord.h ../../include make[2]: Leaving directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/coord' (cd mtbl; make; make install) make[2]: Entering directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/mtbl' x86_64-pc-linux-gnu-gcc -g -I . -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c mtbl.c ar rv libmtbl.a mtbl.o ar: creating libmtbl.a a - mtbl.o make[2]: Leaving directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/mtbl' make[2]: Entering directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/mtbl' cp libmtbl.a ../.. cp mtbl.h ../../include make[2]: Leaving directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/mtbl' (cd svc; make; make install) make[2]: Entering directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/svc' x86_64-pc-linux-gnu-gcc -g -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -fno-common -c -o svclib.o svclib.c svclib.c: In function ‘svc_init’: svclib.c:334:11: warning: ignoring return value of ‘pipe’, declared with attribute warn_unused_result [-Wunused-result] 334 | (void) pipe(svc_list[index]->fdin ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ svclib.c:335:11: warning: ignoring return value of ‘pipe’, declared with attribute warn_unused_result [-Wunused-result] 335 | (void) pipe(svc_list[index]->fdout); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-gcc -g -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -fno-common -c -o structlib.o structlib.c ar rv libsvc.a svclib.o structlib.o ar: creating libsvc.a a - svclib.o a - structlib.o make[2]: Leaving directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/svc' make[2]: Entering directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/svc' cp libsvc.a ../.. cp svc.h ../../include make[2]: Leaving directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/svc' (cd json; make; make install) make[2]: Entering directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/json' x86_64-pc-linux-gnu-gcc -g -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -fno-common -c -o jsonlib.o jsonlib.c ar rv libjson.a jsonlib.o ar: creating libjson.a a - jsonlib.o make[2]: Leaving directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/json' make[2]: Entering directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/json' cp libjson.a ../.. cp json.h ../../include make[2]: Leaving directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/json' (cd boundaries; make; make install) make[2]: Entering directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/boundaries' x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=native -fno-common -I/usr/include/wcs -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -o boundaries.o boundaries.c rm -f libboundaries.a x86_64-pc-linux-gnu-ar q libboundaries.a boundaries.o x86_64-pc-linux-gnu-ar: creating libboundaries.a make[2]: Leaving directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/boundaries' make[2]: Entering directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/boundaries' cp libboundaries.a ../.. cp boundaries.h ../../include make[2]: Leaving directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/boundaries' (cd pixbounds; make; make install) make[2]: Entering directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/pixbounds' x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=native -fno-common -I/usr/include/wcs -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -o pixbounds.o pixbounds.c rm -f libpixbounds.a x86_64-pc-linux-gnu-ar q libpixbounds.a pixbounds.o x86_64-pc-linux-gnu-ar: creating libpixbounds.a make[2]: Leaving directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/pixbounds' make[2]: Entering directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/pixbounds' cp libpixbounds.a ../.. cp pixbounds.h ../../include make[2]: Leaving directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/pixbounds' (cd www; make; make install) make[2]: Entering directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/www' x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=native -fno-common -I/usr/include/wcs -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -o www.o www.c rm -f libwww.a x86_64-pc-linux-gnu-ar q libwww.a www.o x86_64-pc-linux-gnu-ar: creating libwww.a make[2]: Leaving directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/www' make[2]: Entering directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/www' cp libwww.a ../.. cp www.h ../../include make[2]: Leaving directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/www' (cd two_plane_v1.1; make; make install) make[2]: Entering directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/two_plane_v1.1' x86_64-pc-linux-gnu-gcc -c -ansi -Wall -O2 -pipe -march=native -fno-common -I/usr/include/wcs -I. -I../../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -o two_plane.o two_plane.c two_plane.c: In function ‘Initialize_TwoPlane’: two_plane.c:680:8: warning: implicit declaration of function ‘isnan’ [-Wimplicit-function-declaration] 680 | if(isnan(invdet)){ | ^~~~~ x86_64-pc-linux-gnu-gcc -c -ansi -Wall -O2 -pipe -march=native -fno-common -I/usr/include/wcs -I. -I../../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -o distort.o distort.c x86_64-pc-linux-gnu-gcc -c -ansi -Wall -O2 -pipe -march=native -fno-common -I/usr/include/wcs -I. -I../../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -o initdistdata.o initdistdata.c initdistdata.c: In function ‘closefitsfile’: initdistdata.c:36:13: warning: ‘return’ with a value, in function returning void [-Wreturn-type] 36 | return -1; | ^ initdistdata.c:29:6: note: declared here 29 | void closefitsfile() | ^~~~~~~~~~~~~ initdistdata.c:38:10: warning: ‘return’ with a value, in function returning void [-Wreturn-type] 38 | return 0; | ^ initdistdata.c:29:6: note: declared here 29 | void closefitsfile() | ^~~~~~~~~~~~~ x86_64-pc-linux-gnu-gcc -c -ansi -Wall -O2 -pipe -march=native -fno-common -I/usr/include/wcs -I. -I../../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -o undistort.o undistort.c x86_64-pc-linux-gnu-gcc -c -ansi -Wall -O2 -pipe -march=native -fno-common -I/usr/include/wcs -I. -I../../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -o redefine_pointing.o redefine_pointing.c redefine_pointing.c: In function ‘redefine_pointing’: redefine_pointing.c:113:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 113 | if(verbose) | ^~ redefine_pointing.c:115:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 115 | ireturn += 2; | ^~~~~~~ In file included from /usr/include/string.h:494, from redefine_pointing.c:3: In function ‘strncpy’, inlined from ‘replace_keyword’ at redefine_pointing.c:307:3: /usr/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ redefine_pointing.c: In function ‘replace_keyword’: redefine_pointing.c:306:18: note: length computed here 306 | total_length = strlen(char_value); | ^~~~~~~~~~~~~~~~~~ ar rv libtwoplane.a two_plane.o distort.o initdistdata.o \ undistort.o redefine_pointing.o ar: creating libtwoplane.a a - two_plane.o a - distort.o a - initdistdata.o a - undistort.o a - redefine_pointing.o make[2]: Leaving directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/two_plane_v1.1' make[2]: Entering directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/two_plane_v1.1' cp libtwoplane.a ../.. cp two_plane.h distort.h ../../include make[2]: Leaving directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/two_plane_v1.1' (cd lodepng_20140823; make; make install) make[2]: Entering directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/lodepng_20140823' x86_64-pc-linux-gnu-gcc -c -ansi -Wall -O2 -pipe -march=native -fno-common -I/usr/include/wcs -I. -I../../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c -o lodepng.o lodepng.c ar rv liblodepng.a lodepng.o ar: creating liblodepng.a a - lodepng.o make[2]: Leaving directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/lodepng_20140823' make[2]: Entering directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/lodepng_20140823' cp liblodepng.a ../.. cp lodepng.h ../../include make[2]: Leaving directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src/lodepng_20140823' (cd ..; ranlib *.a) chmod 644 ../include/* make[1]: Leaving directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/lib/src' if test -d Montage; then (cd Montage; ./Configure.sh; make; make install); fi OS: Linux make[1]: Entering directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/Montage' x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/include/wcs -I. -I../lib/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c99 -c mAdd.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/include/wcs -I. -I../lib/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c99 -c filePath.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/include/wcs -I. -I../lib/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c99 -c debugCheck.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/include/wcs -I. -I../lib/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c99 -c checkHdr.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/include/wcs -I. -I../lib/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -std=c99 -c checkWCS.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -o mAdd mAdd.o filePath.o debugCheck.o checkHdr.o \ checkWCS.o -L../lib -lwcstools -lcfitsio -lm -lbz2 -lz -lcoord -lmtbl -lsvc -lwww -lboundaries -lpixbounds -ltwoplane -lm /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: debugCheck.o:(.bss+0x0): multiple definition of `fstatus'; mAdd.o:(.bss+0x3e0): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: checkHdr.o:(.bss+0x880): multiple definition of `fstatus'; mAdd.o:(.bss+0x3e0): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: checkWCS.o:(.bss+0x8): multiple definition of `fstatus'; mAdd.o:(.bss+0x3e0): first defined here collect2: error: ld returned 1 exit status make[1]: *** [Makefile:77: mAdd] Error 1 make[1]: Leaving directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/Montage' make[1]: Entering directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/Montage' cp mAdd mAddCube mAddExec mBackground mBgExec mBgModel mConvert mCoverageCheck mDiff mDiffExec mDiffFitExec mFitExec mFitplane mFlattenExec mGetHdr mHdrCheck mHdrtbl mImgtbl mMakeHdr mMakeImg mOverlaps mProject mProjectCube mProjectPP mProjExec mPutHdr mShrink mShrinkCube mSubCube mSubimage mSubset mTANHdr mTblSort mTileHdr mTileImage ../bin cp: cannot stat 'mAdd': No such file or directory cp: cannot stat 'mAddCube': No such file or directory cp: cannot stat 'mAddExec': No such file or directory cp: cannot stat 'mBackground': No such file or directory cp: cannot stat 'mBgExec': No such file or directory cp: cannot stat 'mBgModel': No such file or directory cp: cannot stat 'mConvert': No such file or directory cp: cannot stat 'mCoverageCheck': No such file or directory cp: cannot stat 'mDiff': No such file or directory cp: cannot stat 'mDiffExec': No such file or directory cp: cannot stat 'mDiffFitExec': No such file or directory cp: cannot stat 'mFitExec': No such file or directory cp: cannot stat 'mFitplane': No such file or directory cp: cannot stat 'mFlattenExec': No such file or directory cp: cannot stat 'mGetHdr': No such file or directory cp: cannot stat 'mHdrCheck': No such file or directory cp: cannot stat 'mHdrtbl': No such file or directory cp: cannot stat 'mImgtbl': No such file or directory cp: cannot stat 'mMakeHdr': No such file or directory cp: cannot stat 'mMakeImg': No such file or directory cp: cannot stat 'mOverlaps': No such file or directory cp: cannot stat 'mProject': No such file or directory cp: cannot stat 'mProjectCube': No such file or directory cp: cannot stat 'mProjectPP': No such file or directory cp: cannot stat 'mProjExec': No such file or directory cp: cannot stat 'mPutHdr': No such file or directory cp: cannot stat 'mShrink': No such file or directory cp: cannot stat 'mShrinkCube': No such file or directory cp: cannot stat 'mSubCube': No such file or directory cp: cannot stat 'mSubimage': No such file or directory cp: cannot stat 'mSubset': No such file or directory cp: cannot stat 'mTANHdr': No such file or directory cp: cannot stat 'mTblSort': No such file or directory cp: cannot stat 'mTileHdr': No such file or directory cp: cannot stat 'mTileImage': No such file or directory make[1]: *** [Makefile:250: install] Error 1 make[1]: Leaving directory '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage/Montage' make: *** [Makefile:5: all] Error 2 * ERROR: sci-astronomy/montage-5.0::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-astronomy/montage-5.0::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-astronomy/montage-5.0::gentoo'`. * The complete build log is located at '/var/log/portage/sci-astronomy:montage-5.0:20200205-191802.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-astronomy/montage-5.0/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-astronomy/montage-5.0/temp/environment'. * Working directory: '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage' * S: '/var/tmp/portage/sci-astronomy/montage-5.0/work/Montage'