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Gentoo's Bugzilla – Attachment 611606 Details for
Bug 708234
sci-chemistry/chemtool-1.6.14 : fails to build with -fno-common or gcc-10
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sci-chemistry:chemtool-1.6.14:20200204-104608.log
sci-chemistry:chemtool-1.6.14:20200204-104608.log (text/plain), 18.06 KB, created by
Toralf Förster
on 2020-02-04 17:10:25 UTC
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Description:
sci-chemistry:chemtool-1.6.14:20200204-104608.log
Filename:
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Creator:
Toralf Förster
Created:
2020-02-04 17:10:25 UTC
Size:
18.06 KB
patch
obsolete
> * Package: sci-chemistry/chemtool-1.6.14 > * Repository: gentoo > * Maintainer: sci-chemistry@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc gnome kernel_linux nls userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>>> Unpacking source... >>>> Unpacking chemtool-1.6.14.tar.gz to /var/tmp/portage/sci-chemistry/chemtool-1.6.14/work >>>> Source unpacked in /var/tmp/portage/sci-chemistry/chemtool-1.6.14/work >>>> Preparing source in /var/tmp/portage/sci-chemistry/chemtool-1.6.14/work/chemtool-1.6.14 ... > * Applying 1.6.13-no-underlinking.patch ... > [ ok ] > * Running eautoreconf in '/var/tmp/portage/sci-chemistry/chemtool-1.6.14/work/chemtool-1.6.14' ... > * Running autopoint --force ... > [ ok ] > * Running aclocal -I m4 ... > [ ok ] > * Running autoconf --force ... > [ ok ] > * Running autoheader ... > [ ok ] > * Running automake --add-missing --copy --foreign --force-missing ... > [ ok ] > * Running elibtoolize in: chemtool-1.6.14/ >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-chemistry/chemtool-1.6.14/work/chemtool-1.6.14 ... >>>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/chemtool-1.6.14/work/chemtool-1.6.14" > * econf: updating chemtool-1.6.14/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating chemtool-1.6.14/config.guess with /usr/share/gnuconfig/config.guess >/var/tmp/portage/sci-chemistry/chemtool-1.6.14/work/chemtool-1.6.14/configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --libdir=/usr/lib64 --docdir=/usr/share/doc/chemtool-1.6.14 --without-kdedir --with-gnomedir=/usr --disable-emf --enable-undo --enable-menu >checking for a BSD-compatible install... /usr/lib/portage/python3.6/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make supports nested variables... yes >checking whether NLS is requested... yes >checking for msgfmt... /usr/bin/msgfmt >checking for gmsgfmt... /usr/bin/gmsgfmt >checking for xgettext... /usr/bin/xgettext >checking for msgmerge... /usr/bin/msgmerge >checking whether make supports the include directive... yes (GNU style) >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking for ld used by GCC... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for shared library run path origin... done >checking whether NLS is requested... yes >checking for GNU gettext in libc... yes >checking whether to use NLS... yes >checking where the gettext function comes from... libc >checking for x86_64-pc-linux-gnu-gcc... (cached) x86_64-pc-linux-gnu-gcc >checking whether we are using the GNU C compiler... (cached) yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... (cached) yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... (cached) yes >checking dependency style of x86_64-pc-linux-gnu-gcc... (cached) none >checking whether make sets $(MAKE)... (cached) yes >checking whether ln -s works... yes >checking for cp... /bin/cp >checking for rm... /bin/rm >checking for main in -libs... no >checking for acos in -lm... yes >checking for pkg-config... /usr/bin/pkg-config >checking for GTK version and compile options ... checking for x86_64-pc-linux-gnu-pkg-config... (cached) /usr/bin/pkg-config >checking pkg-config is at least version 0.9.0... yes >checking for GTK... yes >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for X... libraries , headers >checking for gethostbyname... yes >checking for connect... yes >checking for remove... yes >checking for shmat... yes >checking for IceConnectionNumber in -lICE... yes >checking for dirent.h that defines DIR... yes >checking for library containing opendir... none required >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for ANSI C header files... yes >checking for XOpenDisplay in -lX11... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for strings.h... (cached) yes >checking for unistd.h... (cached) yes >checking libintl.h usability... yes >checking libintl.h presence... yes >checking for libintl.h... yes >checking for an ANSI C-conforming const... yes >checking for size_t... yes >checking whether struct tm is in sys/time.h or time.h... time.h >checking for working POSIX fnmatch... yes >checking for working memcmp... yes >checking for stdlib.h... (cached) yes >checking for unistd.h... (cached) yes >checking for sys/param.h... yes >checking for getpagesize... yes >checking for working mmap... yes >checking for getcwd... yes >checking for getwd... yes >checking for mkdir... yes >checking for strtod... yes >checking for strtol... yes >checking for KDE ... no >checking for GNOME ... apparently in /usr >no >checking whether to enable libundo... yes >checking whether to use pull-down menus... yes >checking whether to enable emf output... no >checking whether standard GTK dialogs should be used instead of our own... no >checking that generated files are newer than configure... done >configure: creating ./config.status >config.status: creating Makefile >config.status: creating src-cht/Makefile >config.status: creating m4/Makefile >config.status: creating po/Makefile.in >config.status: WARNING: 'po/Makefile.in.in' seems to ignore the --datarootdir setting >config.status: creating po/Makefile >config.status: creating config.h >config.status: executing default-1 commands >config.status: creating po/POTFILES >config.status: creating po/Makefile >config.status: executing depfiles commands >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-chemistry/chemtool-1.6.14/work/chemtool-1.6.14 ... >>>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/chemtool-1.6.14/work/chemtool-1.6.14" >make -j1 >make all-recursive >make[1]: Entering directory '/var/tmp/portage/sci-chemistry/chemtool-1.6.14/work/chemtool-1.6.14' >Making all in m4 >make[2]: Entering directory '/var/tmp/portage/sci-chemistry/chemtool-1.6.14/work/chemtool-1.6.14/m4' >make[2]: Nothing to be done for 'all'. >make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/chemtool-1.6.14/work/chemtool-1.6.14/m4' >Making all in po >make[2]: Entering directory '/var/tmp/portage/sci-chemistry/chemtool-1.6.14/work/chemtool-1.6.14/po' >make[2]: Nothing to be done for 'all'. >make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/chemtool-1.6.14/work/chemtool-1.6.14/po' >Making all in src-cht >make[2]: Entering directory '/var/tmp/portage/sci-chemistry/chemtool-1.6.14/work/chemtool-1.6.14/src-cht' >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common cht.c -o cht >make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/chemtool-1.6.14/work/chemtool-1.6.14/src-cht' >make[2]: Entering directory '/var/tmp/portage/sci-chemistry/chemtool-1.6.14/work/chemtool-1.6.14' >x86_64-pc-linux-gnu-gcc -DLOCALEDIR=\"/usr/share/locale\" -DHAVE_CONFIG_H -I. -I. -I. -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/lib64/libffi/include -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/uuid -I/usr/include/libdrm -I/usr/include/libpng16 -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/atk-1.0 -pthread -DGTK2 -O2 -pipe -march=native -fno-common -c -o main.o main.c >In file included from /usr/include/string.h:494, > from /usr/include/glib-2.0/glib/gtestutils.h:30, > from /usr/include/glib-2.0/glib.h:85, > from /usr/include/glib-2.0/gobject/gbinding.h:28, > from /usr/include/glib-2.0/glib-object.h:23, > from /usr/include/glib-2.0/gio/gioenums.h:28, > from /usr/include/glib-2.0/gio/giotypes.h:28, > from /usr/include/glib-2.0/gio/gio.h:26, > from /usr/include/gtk-2.0/gdk/gdkapplaunchcontext.h:30, > from /usr/include/gtk-2.0/gdk/gdk.h:32, > from /usr/include/gtk-2.0/gdk/gdkprivate.h:30, > from /usr/include/gtk-2.0/gdk/gdkx.h:30, > from main.c:18: >In function âstrncpyâ, > inlined from âfile_ok_selâ at main.c:3027:7: >/usr/include/bits/string_fortified.h:106:10: warning: â__builtin___strncpy_chkâ specified bound depends on the length of the source argument [-Wstringop-overflow=] > 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >main.c: In function âfile_ok_selâ: >main.c:3027:35: note: length computed here > 3027 | strncpy (datadir, filename, strlen (filename) - strlen (tempstr) + 1); > | ^~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -DLOCALEDIR=\"/usr/share/locale\" -DHAVE_CONFIG_H -I. -I. -I. -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/lib64/libffi/include -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/uuid -I/usr/include/libdrm -I/usr/include/libpng16 -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/atk-1.0 -pthread -DGTK2 -O2 -pipe -march=native -fno-common -c -o draw.o draw.c >x86_64-pc-linux-gnu-gcc -DLOCALEDIR=\"/usr/share/locale\" -DHAVE_CONFIG_H -I. -I. -I. -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/lib64/libffi/include -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/uuid -I/usr/include/libdrm -I/usr/include/libpng16 -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/atk-1.0 -pthread -DGTK2 -O2 -pipe -march=native -fno-common -c -o graph.o graph.c >x86_64-pc-linux-gnu-gcc -DLOCALEDIR=\"/usr/share/locale\" -DHAVE_CONFIG_H -I. -I. -I. -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/lib64/libffi/include -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/uuid -I/usr/include/libdrm -I/usr/include/libpng16 -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/atk-1.0 -pthread -DGTK2 -O2 -pipe -march=native -fno-common -c -o chemproc.o chemproc.c >x86_64-pc-linux-gnu-gcc -DLOCALEDIR=\"/usr/share/locale\" -DHAVE_CONFIG_H -I. -I. -I. -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/lib64/libffi/include -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/uuid -I/usr/include/libdrm -I/usr/include/libpng16 -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/atk-1.0 -pthread -DGTK2 -O2 -pipe -march=native -fno-common -c -o undo.o undo.c >x86_64-pc-linux-gnu-gcc -DLOCALEDIR=\"/usr/share/locale\" -DHAVE_CONFIG_H -I. -I. -I. -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/lib64/libffi/include -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/uuid -I/usr/include/libdrm -I/usr/include/libpng16 -I/usr/include/harfbuzz -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/atk-1.0 -pthread -DGTK2 -O2 -pipe -march=native -fno-common -c -o inout.o inout.c >inout.c: In function âimport_pdbâ: >inout.c:732:13: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > 732 | (void)fgets (line, (int)sizeof (line), fp); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >inout.c: In function âcheck_babelâ: >inout.c:6054:13: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > 6054 | (void)fgets (data, 80, xfile); > | ^~~~~~~~~~~~~~~~~~~~~~~ >inout.c: In function âcheck_fig2sxdâ: >inout.c:6133:3: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result [-Wunused-result] > 6133 | fscanf (xfile, "%s", myname); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -DGTK2 -O2 -pipe -march=native -fno-common -Wl,-O1 -Wl,--as-needed -o chemtool main.o draw.o graph.o chemproc.o undo.o inout.o -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lfontconfig -lfreetype -lX11 -lX11 -lm >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: graph.o:(.bss+0x1b8): multiple definition of `babelout'; draw.o:(.bss+0x0): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: graph.o:(.bss+0x1c0): multiple definition of `outmode'; draw.o:(.bss+0x8): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: graph.o:(.bss+0x1c8): multiple definition of `outtype'; draw.o:(.bss+0x10): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: graph.o:(.bss+0x1d0): multiple definition of `babelin'; draw.o:(.bss+0x18): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: graph.o:(.bss+0x1d8): multiple definition of `inmode'; draw.o:(.bss+0x20): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: graph.o:(.bss+0x1e0): multiple definition of `intype'; draw.o:(.bss+0x28): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: chemproc.o:(.bss+0x0): multiple definition of `babelout'; draw.o:(.bss+0x0): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: chemproc.o:(.bss+0x8): multiple definition of `outmode'; draw.o:(.bss+0x8): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: chemproc.o:(.bss+0x10): multiple definition of `outtype'; draw.o:(.bss+0x10): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: chemproc.o:(.bss+0x18): multiple definition of `babelin'; draw.o:(.bss+0x18): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: chemproc.o:(.bss+0x20): multiple definition of `inmode'; draw.o:(.bss+0x20): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: chemproc.o:(.bss+0x28): multiple definition of `intype'; draw.o:(.bss+0x28): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: inout.o:(.bss+0x118): multiple definition of `babelin'; draw.o:(.bss+0x18): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: inout.o:(.bss+0x100): multiple definition of `babelout'; draw.o:(.bss+0x0): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: inout.o:(.bss+0x120): multiple definition of `inmode'; draw.o:(.bss+0x20): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: inout.o:(.bss+0x128): multiple definition of `intype'; draw.o:(.bss+0x28): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: inout.o:(.bss+0x108): multiple definition of `outmode'; draw.o:(.bss+0x8): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: inout.o:(.bss+0x110): multiple definition of `outtype'; draw.o:(.bss+0x10): first defined here >collect2: error: ld returned 1 exit status >make[2]: *** [Makefile:533: chemtool] Error 1 >make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/chemtool-1.6.14/work/chemtool-1.6.14' >make[1]: *** [Makefile:610: all-recursive] Error 1 >make[1]: Leaving directory '/var/tmp/portage/sci-chemistry/chemtool-1.6.14/work/chemtool-1.6.14' >make: *** [Makefile:434: all] Error 2 > * ERROR: sci-chemistry/chemtool-1.6.14::gentoo failed (compile phase): > * emake failed > * > * If you need support, post the output of `emerge --info '=sci-chemistry/chemtool-1.6.14::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-chemistry/chemtool-1.6.14::gentoo'`. > * The complete build log is located at '/var/log/portage/sci-chemistry:chemtool-1.6.14:20200204-104608.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/chemtool-1.6.14/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/chemtool-1.6.14/temp/environment'. > * Working directory: '/var/tmp/portage/sci-chemistry/chemtool-1.6.14/work/chemtool-1.6.14' > * S: '/var/tmp/portage/sci-chemistry/chemtool-1.6.14/work/chemtool-1.6.14'
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