* Package: sci-biology/ucsc-genome-browser-260-r1 * Repository: gentoo * Maintainer: sci-biology@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux mysql server userland_GNU * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>> Unpacking source... >>> Unpacking jksrc.v260.zip to /var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work >>> Source unpacked in /var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work >>> Preparing source in /var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent ... >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent ... make -j1 -C src clean make: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src' ameme make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/ameme' rm -f ameme.o fragFind.o a.out ameme.exe make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/ameme' blat make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/blat' rm -f testRna.psl testProt.psl testProtX.psl testRnaX.psl \ testFine.psl blat.o blat make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/blat' cdnaAli make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/cdnaAli' cd g2cCheck && make clean make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/cdnaAli/g2cCheck' rm -f g2cCheck.o g2cCheck make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/cdnaAli/g2cCheck' make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/cdnaAli' index make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/index' make[1]: Nothing to be done for 'clean'. make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/index' reformat make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/reformat' make[1]: Nothing to be done for 'clean'. make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/reformat' xenoAli make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/xenoAli' cd bwana && make clean make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/xenoAli/bwana' rm -f "bwana.o " "a.out" make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/xenoAli/bwana' cd dynAlign && make clean make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/xenoAli/dynAlign' rm -f "{O}" "a.out" make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/xenoAli/dynAlign' cd stitcher && make clean make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/xenoAli/stitcher' rm -f "stitcher.o " "a.out" make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/xenoAli/stitcher' make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/xenoAli' dnaDust make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/dnaDust' rm -f dnadust.o dnadust.exe a.out make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/dnaDust' protDust make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/protDust' rm -f protDust.o protDust.exe a.out make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/protDust' idbQuery make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/idbQuery' rm -f idbQuery.o idbQuery.exe a.out make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/idbQuery' scanIntrons make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/scanIntrons' rm -f scanIntrons.o scanIntrons.exe a.out make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/scanIntrons' tracks make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/tracks' rm -f tracks.o tracksWS120.exe make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/tracks' weblet make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/weblet' cd counter && make clean make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/weblet/counter' rm -f counter.o a.out counter make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/weblet/counter' cd hitreport && make clean make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/weblet/hitreport' rm -f hitreport.o a.out hitreport.exe make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/weblet/hitreport' make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/weblet' aladdin make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/aladdin' cd aladdin && make clean make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/aladdin/aladdin' rm -f aladdin.exe make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/aladdin/aladdin' make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/aladdin' getgene make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/getgene' rm -f getgene.exe getgene.o a.out make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/getgene' primeMate make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/primeMate' rm -f primeMate.exe primeMate.o a.out make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/primeMate' wormAli make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/wormAli' rm -f wormAli.exe a.out wormAli.o make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/wormAli' fuse make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/fuse' rm -f make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/fuse' cd lib && make clean make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/lib' rm -f aliType.o apacheLog.o asParse.o axt.o axtAffine.o bamFile.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o bwgValsOnChrom.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dystring.o emblParse.o errCatch.o errabort.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o font/mgCourier10.o font/mgCourier12.o font/mgCourier14.o font/mgCourier18.o font/mgCourier24.o font/mgCourier34.o font/mgCourier8.o font/mgHelvetica10.o font/mgHelvetica12.o font/mgHelvetica14.o font/mgHelvetica18.o font/mgHelvetica24.o font/mgHelvetica34.o font/mgHelvetica8.o font/mgHelveticaBold10.o font/mgHelveticaBold12.o font/mgHelveticaBold14.o font/mgHelveticaBold18.o font/mgHelveticaBold24.o font/mgHelveticaBold34.o font/mgHelveticaBold8.o font/mgSixhi6.o font/mgSail8.o font/mgTimes10.o font/mgTimes12.o font/mgTimes14.o font/mgTimes18.o font/mgTimes24.o font/mgTimes34.o font/mgTimes8.o font/mgMenlo12.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o hacTree.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o https.o intExp.o intValTree.o internet.o itsa.o jointalign.o jpegSize.o keys.o knetUdc.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o memalloc.o memgfx.o metaWig.o mgCircle.o mgPolygon.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o peakCluster.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rainbow.o rbTree.o rangeTree.o regexHelper.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vcf.o vGfx.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o x86_64/jkweb.a cd tests && make clean make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/lib/tests' rm -rf *.o bin output *.tmp mimeTester.tmp mimeTester.out fetchUrlTest make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/lib/tests' make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/lib' cd hg && make clean make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg' cd lib && make clean make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/lib' rm -f acemblyClass.o affyAllExonProbe.o affyAtlas.o affy10KDetails.o affy120KDetails.o affyOffset.o affyPairs.o agp.o agpFrag.o agpGap.o alignSeqSizes.o altGraph.o altGraphX.o ancientRref.o atomDb.o axtInfo.o axtLib.o bactigPos.o hgBam.o baseMaskCommon.o bdgpExprLink.o bdgpGeneInfo.o bed.o bed5FloatScore.o bed5Pval.o bed6FloatScore.o bed8Attrs.o bed12Source.o bed12wSeq.o bedCart.o bgiGeneInfo.o bgiGeneSnp.o bgiSnp.o bioImage.o blastTab.o blastzNet.o blatServers.o borf.o borkPseudoHom.o botDelay.o cart.o cartDb.o cdsEvidence.o cdsOrtho.o cdsPick.o cdsSpec.o ccdsInfo.o ccdsNotes.o ccdsGeneMap.o celeraCoverage.o celeraDupPositive.o cgapSage/cgapSage.o cgapSage/cgapSageLib.o cgh.o chainCart.o chainDb.o chainLink.o chainNet.o chainNetDbLoad.o chicken13kInfo.o chromBins.o chr18deletions.o chromGraph.o chromGraphFactory.o chromInfo.o chromInserts.o chromKeeper.o clonePos.o codeBlast.o codeBlastScore.o cogs.o cogsxra.o columnInfo.o contigAcc.o coordConv.o cnpIafrate.o cnpIafrate2.o cnpLocke.o cnpRedon.o cnpSebat.o cnpSebat2.o cnpSharp2.o cnpSharpCutoff.o cnpSharpSample.o cnpSharp.o cpgIsland.o cpgIslandExt.o ctgPos.o ctgPos2.o bedDetail.o customFactory.o customPp.o customTrack.o cutter.o cv.o cytoBand.o dbDb.o dbRIP.o dbSnpRs.o defaultDb.o delConrad2.o delHinds2.o dgv.o dless.o dnaMotifSql.o dnaMarkovSql.o dnaProbe.o dv.o dvBed.o dvXref2.o easyGene.o ec.o ecCode.o ecAttribute.o ecAttributeCode.o encode/encodeErge.o encode/encodeErgeHssCellLines.o encode/encodeHapMapAlleleFreq.o encode/encodeIndels.o encode/encodePeak.o encode/encodeRegionInfo.o encode/encodeRegionInfoCustom.o encode/encodeRna.o encode/encodeStanfordPromoters.o encode/encodeStanfordPromotersAverage.o encode/pairedTagAlign.o encode/peptideMapping.o encode/tagAlign.o encode/wgEncodeGencodeAttrs.o encode/wgEncodeGencodeExonSupport.o encode/wgEncodeGencodeTag.o encode/wgEncodeGencodePdb.o encode/wgEncodeGencodePubMed.o encode/wgEncodeGencodeRefSeq.o encode/wgEncodeGencodeGeneSource.o encode/wgEncodeGencodeTranscriptSource.o encode/wgEncodeGencodeTranscriptSupport.o encode/wgEncodeGencodeUniProt.o encode/wgEncodeGencodePolyAFeature.o encode/wgEncodeGencodeAnnotationRemark.o encode/encodeExp.o ensFace.o ensInfo.o ensPhusionBlast.o ensXRefZfish.o est3.o estOrientInfo.o estPair.o exoFish.o expData.o expRecord.o exprBed.o fbTables.o featureBits.o fileUi.o findKGAlias.o findKGProtAlias.o fishClones.o flyBase2004Xref.o flyBaseSwissProt.o flyreg.o flyreg2.o gbExtFile.o gbWarn.o gbMiscDiff.o gbProtAnn.o gcPercent.o gbSeq.o genbank.o gencodeGeneClass.o gencodeIntron.o genMapDb.o geneBands.o geneCheck.o geneCheckDetails.o geneCheckWidget.o geneGraph.o genePred.o genePredReader.o geneSimilarities.o genoLay.o genomeRangeTreeFile.o genomicDups.o genomicSuperDups.o ggCluster.o ggDbIo.o ggDump.o ggGraph.o ggMrnaAli.o ggTypes.o glDbRep.o goa.o goaPart.o googleAnalytics.o growthCondition.o grp.o gwasCatalog.o hapmapAllelesOrtho.o hapmapAllelesSummary.o hapmapPhaseIIISummary.o hapmapSnps.o hapmapSnpsCombined.o hCommon.o hCytoBand.o hdb.o hgColors.o hgConfig.o hgExp.o hgFind.o hgFindSpec.o hgFindSpecCustom.o hgGene.o hgMaf.o hgRelate.o hgSeq.o hgdpGeo.o hPrint.o hVarSubst.o hvGfx.o HInv.o hubConnect.o hui.o humanParalog.o imageClone.o isochores.o ispyTables.o itemAttr.o itemConf.o jalview.o jaxOrtholog.o jaxQTL.o jaxQTL3.o jksql.o joiner.o jsHelper.o kg1ToKg2.o jgiGene.o kgAlias.o kgColor.o kgProtAlias.o kgXref.o knownInfo.o knownMore.o knownToSuper.o ld.o ld2.o lfs.o liftOver.o liftOverChain.o liftUp.o llaInfo.o lsSnpPdb.o lsSnpPdbChimera.o mafFrames.o mafGene.o mafSummary.o makeItemsItem.o mammalPsg.o mapSts.o mcnBreakpoints.o mdb.o metaChromGraph.o microarray.o minChromSize.o minGeneInfo.o mrnaMisMatch.o mouseOrtho.o mouseSyn.o mouseSynWhd.o mysqlTableStatus.o netAlign.o netCart.o nonCodingUi.o omimTitle.o ooUtils.o orthoAlleles.o pal.o pbStamp.o pcrResult.o pepPred.o plasEndPairs.o polyGenotype.o protFeat.o pscreen.o pseudoGeneLink.o pslReader.o pslWScore.o putaInfo.o qaSeq.o rangeTreeFile.o rankProp.o recombRate.o recombRateRat.o recombRateMouse.o refLink.o refSeqStatus.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o riken.o rhMapZfishInfo.o rikenBest.o rikenCluster.o rmskOut.o rnaFold.o rnaGene.o rnaGroup.o rnaHybridization.o rnaPLFold.o tRNAs.o gbRNAs.o snoRNAs.o lowelabPfamHit.o lowelabArkinOperonScore.o lowelabTIGROperonScore.o rnaSecStr.o tfbsConsFactors.o roughAli.o transMapStuff.o transMapInfo.o transMapGene.o transMapSrc.o sage.o sageCounts.o sageExp.o samAlignment.o sample.o sanger22extra.o sangerGene.o sangerGeneToWBGeneID.o sargassoSeaXra.o scopDes.o scoredRef.o search.o sgdAbundance.o sgdClone.o sgdDescription.o sgdOther.o simpleNucDiff.o simpleRepeat.o snp.o snp125.o snp125CodingCoordless.o snp132Ext.o snpExceptions.o snpFasta.o snpMap.o snpTmp.o snpUi.o snp125Exceptions.o snp125Ui.o softPromoter.o softberryHom.o spDb.o splignAlign.o stanMad.o stsAlias.o stsInfo.o stsInfo2.o stsInfoMouse.o stsInfoMouseNew.o stsInfoRat.o stsMap.o stsMapMouse.o stsMapMouseNew.o stsMapRat.o stsMarker.o suggest.o switchDbTss.o synMap.o synteny100000.o syntenyBerk.o syntenySanger.o sqlProg.o tfbsCons.o tfbsConsSites.o tableDescriptions.o tableStatus.o targetDb.o tfbsConsMap.o taxonDivision.o taxonGeneticCode.o taxonName.o taxonNode.o taxonXref.o tigrCmrGene.o tigrOperon.o tilingPath.o traceInfo.o trackDb.o trackDbCustom.o trackHub.o trackLayout.o trackTable.o trackVersion.o trashDir.o transRegCode.o transRegCodeCondition.o transRegCodeProbe.o txCluster.o txCommon.o txEdgeBed.o txEdgeOrtho.o txGraph.o txInfo.o txRnaAccs.o ucscRetroInfo.o ucscRetroOrtho.o validateGisaid.o vcfUi.o vegaInfo.o vegaInfoZfish.o visiGene.o vntr.o wabAli.o web.o ncRna.o wgRna.o wigAsciiToBinary.o wigDataStream.o wiggle.o wiggleCart.o wiggleUtils.o wikiLink.o wikiTrack.o yaleGencodeAssoc.o zdobnovSynt.o oreganno.o oregannoUi.o gvUi.o gv.o omicia.o protVar.o pgSnp.o alignInfo.o cddInfo.o loweutils.o cddDesc.o arCOGs.o arcogdesc.o geneTree.o megablastInfo.o pgPhenoAssoc.o pgSiftPred.o pgPolyphenPred.o variome.o; rm -f ../../lib/x86_64/jkhgap.a; make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/lib' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/cartReset' rm -f cartReset.o cartReset make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/cartReset' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/das' rm -f das.o das make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/das' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgBlat' rm -f hgBlat.o hgBlat rm -f hgSs_*.fa hgSs_*.pslx make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgBlat' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/makeDb/hgCgiData' make[2]: 'clean' is up to date. make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/makeDb/hgCgiData' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgConvert' rm -f hgConvert.o hgConvert make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgConvert' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgHubConnect' rm -f hgHubConnect.o hgHubConnect make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgHubConnect' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgGateway' rm -f hgGateway.o hgGateway make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgGateway' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgGene' rm -f hgGene.o altSplice.o ctd.o dnaBindMotif.o domains.o gad.o flyBaseInfo.o go.o info.o links.o microarray.o method.o localization.o mrnaDescriptions.o otherOrgs.o pathways.o pseudoGene.o rgdInfo.o rnaStructure.o sequence.o swissProtComments.o synonym.o wikiTrack.o geneReviews.o hgGene make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgGene' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgGenome' rm -f browseRegions.o clickOnImage.o configure.o correlate.o hgGenome.o mainPage.o sortGenes.o upload.o usage.o custom.o wiggle.o maf.o bedList.o chromGraph.o import.o hgGenome make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgGenome' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgPcr' rm -f hgPcr.o hgPcr make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgPcr' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgSession' rm -f hgSession.o hgSession make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgSession' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgSuggest' rm -f hgSuggest.o hgSuggest make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgSuggest' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgTables' rm -f hgTables.o asFilter.o bam.o bedList.o bigBed.o bigWig.o chromGraph.o compositeTrack.o custom.o filterFields.o gffOut.o identifiers.o intersect.o correlate.o correlatePlot.o joining.o maf.o mainPage.o microarrayTables.o rangeHistogram.o schema.o pal.o seqOut.o sumStats.o usage.o vcf.o wiggle.o wikiTrack.o galaxy.o great.o userRegions.o hgTables make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgTables' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgTracks' rm -f mainMain.o altGraphXTrack.o bamTrack.o bedGraph.o bedTrack.o bigBedTrack.o bigWarn.o bigWigTrack.o chainTrack.o cgapSageTrack.o chromGraphTrack.o config.o container.o contigTrack.o coverageTrack.o cytoBandTrack.o cutterTrack.o expRatioTracks.o factorSource.o hgTracks.o goldTrack.o gvfTrack.o loweLabTracks.o mafTrack.o makeItemsTrack.o multiWig.o netTrack.o pslTrack.o rmskTrack.o sampleTracks.o searchTracks.o simpleTracks.o snakeTrack.o switchGear.o transMapTracks.o wabaTrack.o wigTrack.o cds.o wigMafTrack.o encode.o variation.o vcfTrack.o transcriptome.o rnaFoldTrack.o retroGene.o hapmapTrack.o rnaPLFoldTrack.o wiki.o wikiTrack.o imageV2.o hgTracks rm -f ct_hgwdev_*.bed hgtIdeo_*.gif hgt_*.gif rm -f hgRenderTracks renderMain.o altGraphXTrack.o bamTrack.o bedGraph.o bedTrack.o bigBedTrack.o bigWarn.o bigWigTrack.o chainTrack.o cgapSageTrack.o chromGraphTrack.o config.o container.o contigTrack.o coverageTrack.o cytoBandTrack.o cutterTrack.o expRatioTracks.o factorSource.o hgTracks.o goldTrack.o gvfTrack.o loweLabTracks.o mafTrack.o makeItemsTrack.o multiWig.o netTrack.o pslTrack.o rmskTrack.o sampleTracks.o searchTracks.o simpleTracks.o snakeTrack.o switchGear.o transMapTracks.o wabaTrack.o wigTrack.o cds.o wigMafTrack.o encode.o variation.o vcfTrack.o transcriptome.o rnaFoldTrack.o retroGene.o hapmapTrack.o rnaPLFoldTrack.o wiki.o wikiTrack.o imageV2.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgTracks' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgTrackUi' rm -f hgTrackUi.o cgapSageUi.o encodePeakUi.o hgTrackUi make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgTrackUi' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgc' rm -f hgc.o bamClick.o bigBedClick.o dbRIP.o ccdsClick.o cgapSageClick.o encodeClick.o expClick.o gencodeClick.o gvfClick.o hgdpClick.o lowelab.o mafClick.o makeItemsClick.o mgcClick.o parClick.o peakClusters.o regMotif.o retroClick.o rnaFoldClick.o transMapClick.o txCdsInfo.o t2g.o vcfClick.o virusClick.o wiggleClick.o wikiTrack.o variomeClick.o hgc make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgc' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgApi' rm -f hgApi.o hgApi make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgApi' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/cartDump' rm -f cartDump.o cartDump make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/cartDump' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgNear' rm -f hgNear.o advFilter.o afiAli.o association.o colTemplate.o configure.o customColumn.o examples.o expRatio.o flyBase.o getSeq.o go.o intronSize.o knownGene.o order.o pfam.o search.o userSettings.o hgNear make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgNear' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/pbGateway' rm -f pbGateway.o pbGateway make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/pbGateway' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/pbTracks' rm -f pbTracks.o pbTracks make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/pbTracks' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/pbGlobal' rm -f pbGlobal.o pbGlobal make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/pbGlobal' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgLiftOver' rm -f hgLiftOver.o hgLiftOver make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgLiftOver' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/visiGene/hgVisiGene' rm -f hgVisiGene.o captionElement.o configPage.o printCaption.o probePage.o visiSearch.o hgVisiGene make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/visiGene/hgVisiGene' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/encode/mkEncodeFrameset' echo "nothing to clean here" nothing to clean here make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/encode/mkEncodeFrameset' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/encode/hgEncodeDataVersions' rm -f hgEncodeDataVersions.o hgEncodeDataVersions make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/encode/hgEncodeDataVersions' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/encode/hgEncodeVocab' rm -f hgEncodeVocab.o hgEncodeVocab make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/encode/hgEncodeVocab' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/phyloGif' rm -f phyloGif.o phyloGif rm -f test.gif testWeb.gif make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/phyloGif' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgCustom' rm -f hgCustom.o hgCustom make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgCustom' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgPal' rm -f hgPal.o hgPal make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgPal' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgFileUi' rm -f hgFileUi.o hgFileUi make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgFileUi' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgFileSearch' rm -f hgFileSearch.o hgFileSearch make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgFileSearch' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/makeDb/hgCgiData' make[2]: 'clean' is up to date. make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/makeDb/hgCgiData' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/js' make[2]: Nothing to be done for 'clean'. make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/js' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/htdocs/style' make[2]: Nothing to be done for 'clean'. make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/htdocs/style' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/makeDb/hgLoadBed' rm -f hgLoadBed.o hgLoadBed tests/bed.tab make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/makeDb/hgLoadBed' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/makeDb/hgLoadWiggle' rm -f test_data/chr1_0.wib test_data/chr1_0.wig test_data/chr1_1.wib \ test_data/chr1_1.wig test_data/chr1_2.wib test_data/chr1_2.wig \ test_data/chr1_begin.ascii test_data/chr1_end.ascii \ test_data/chr1_middle.ascii test_data/chrM.ascii test_data/chrM.wib \ test_data/chrM.wig test_data/wiggle.tab \ hgLoadWiggle.o hgDumpWiggle.o hgWiggle.o hgWiggle wigEncode.o wigEncode hgLoadWiggle make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/makeDb/hgLoadWiggle' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/makeDb/hgLoadMaf' rm -f hgLoadMaf.o hgLoadMafSummary.o hgLoadMaf hgLoadMafSummary tests/bed.tab make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/makeDb/hgLoadMaf' touch non-empty-rm.o find . -name \*.o -print | xargs rm make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg' cd hg && make clean_utils make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/affyTransciptome' rm -f affyPairsToSample normalizeSampleFile avgTranscriptomeExps maxTranscriptomeExps scaleSampleFiles averageZoomLevels groupSamples make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/affyTransciptome' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/agpCloneCheck' rm -f agpCloneCheck.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/agpCloneCheck' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/agpCloneList' rm -f agpCloneList.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/agpCloneList' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/agpAllToFaFile' rm -f agpAllToFaFile.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/agpAllToFaFile' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/agpToFa' rm -f agpToFa.o agpToFa make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/agpToFa' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/agpToGl' rm -f agpToGl.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/agpToGl' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/altSplice' cd lib; make clean make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/altSplice/lib' rm -f spliceGraph.o exonGraph.o heap.o altSpliceSite.o pfamDat.o affyProbe.o altProbe.o dMatrix.o splice.o mouseAPSetEventMap.o; rm -f heapTest rm -f ./x86_64/libSpliceGraph.a rm -fr ./x86_64 make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/altSplice/lib' cd altSplice; make clean make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/altSplice/altSplice' rm -f sequenceForBed altAnalysis altSplice orthoSplice agxToBed altSummary bedInGraph consForBed altPaths bedToExons genePredToPsl cd tests; make clean make[4]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/altSplice/altSplice/tests' rm -f input/chromTest.nib input/alt3Prime5PrimeCassAgx.psl \ input/simpleCass.psl tmp.agx input/altEndsStarts.psl \ input/altRetInt.psl input/mutExclusive.psl \ tmp.psl make[4]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/altSplice/altSplice/tests' make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/altSplice/altSplice' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/altSplice' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/autoDtd' rm -f autoDtd.o rm -f test/*/out.* make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/autoDtd' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/autoSql' rm -f autoSql autoSql.o cd tests && make clean make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/autoSql/tests' rm -rf output *.o testHarness dbLinkTest jsonTest make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/autoSql/tests' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/autoSql' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/autoXml' rm -f *.o rm -rf test/*/out make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/autoXml' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/bedOrBlocks' rm -f bedOrBlocks.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/bedOrBlocks' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/bedIntersect' rm -f bedIntersect.o (cd tests && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/bedIntersect/tests' rm -rf output make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/bedIntersect/tests' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/bedIntersect' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/bedItemOverlapCount' rm -f bedItemOverlapCount.o bedItemOverlapCount make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/bedItemOverlapCount' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/bedSort' rm -f bedSort bedSort.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/bedSort' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/bedToGenePred' rm -f bedToGenePred.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/bedToGenePred' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/bedSplitOnChrom' rm -f bedSplitOnChrom.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/bedSplitOnChrom' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/blastToPsl' rm -f tests/output blastToPsl.o pslBuild.o blastXmlToPsl.o ncbiBlast.o pslBuild.o rm -f blastXmlToPsl blastToPsl make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/blastToPsl' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/borfBig' rm -f borfBig.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/borfBig' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/checkCoverageGaps' rm -f checkCoverageGaps checkCoverageGaps.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/checkCoverageGaps' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/checkHgFindSpec' rm -f checkHgFindSpec.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/checkHgFindSpec' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/checkTableCoords' rm -f checkTableCoords *.o cd tests && make clean make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/checkTableCoords/tests' rm -fr output rm -f *.tab hgsql test -e 'drop table chromInfo;' > /dev/null 2>&1; /bin/true make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/checkTableCoords/tests' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/checkTableCoords' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ctgFaToFa' rm -f ctgFaToFa.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ctgFaToFa' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ctgToChromFa' rm -f ctgToChromFa.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ctgToChromFa' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/dbTrash' rm -f dbTrash.o dbTrash make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/dbTrash' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/estOrient' rm -f estOrient.o estOrient estOrient cd tests && make clean make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/estOrient/tests' rm -rf output make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/estOrient/tests' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/estOrient' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/embossToPsl' rm -f embossToPsl.o embossToPsl cd tests && make clean make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/embossToPsl/tests' rm -rf output make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/embossToPsl/tests' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/embossToPsl' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/encode/validateFiles' rm -f validateFiles.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/encode/validateFiles' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/fakeFinContigs' rm -f fakeFinContigs.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/fakeFinContigs' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/fakeOut' rm -f fakeOut.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/fakeOut' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/featureBits' rm -f featureBits featureBits.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/featureBits' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ffaToFa' rm -f ffaToFa.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ffaToFa' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/fishClones' rm -f fishClones fishClones.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/fishClones' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/fqToQa' rm -f fqToQa.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/fqToQa' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/fqToQac' rm -f fqToQac.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/fqToQac' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/fragPart' rm -f fragPart.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/fragPart' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/gbGetEntries' (cd tests && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/gbGetEntries/tests' rm -fr output make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/gbGetEntries/tests' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/gbGetEntries' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/gbOneAcc' rm -f gbOneAcc.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/gbOneAcc' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/gbToFaRa' rm -f gbToFaRa gbToFaRa.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/gbToFaRa' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds' ( cd assessLibs && echo assessLibs && make clean ) assessLibs make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/assessLibs' rm -f assessLibs.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/assessLibs' ( cd averagExp && echo averagExp && make clean ) averagExp make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/averagExp' rm -f averagExp.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/averagExp' ( cd axtForEst && echo axtForEst && make clean ) axtForEst make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/axtForEst' rm -f axtForEst.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/axtForEst' ( cd bedCons && echo bedCons && make clean ) bedCons make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/bedCons' rm -f bedCons.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/bedCons' ( cd checkableBorf && echo checkableBorf && make clean ) checkableBorf make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/checkableBorf' rm -f checkableBorf.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/checkableBorf' ( cd clusterGenes && echo clusterGenes && make clean ) clusterGenes make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/clusterGenes' rm -f clusterGenes.o (cd tests && make clean) make[4]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/clusterGenes/tests' rm -rf output make[4]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/clusterGenes/tests' make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/clusterGenes' ( cd clusterPsl && echo clusterPsl && make clean ) clusterPsl make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/clusterPsl' rm -f clusterPsl.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/clusterPsl' ( cd clusterRna && echo clusterRna && make clean ) clusterRna make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/clusterRna' rm -f clusterRna.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/clusterRna' ( cd dnaMotifFind && echo dnaMotifFind && make clean ) dnaMotifFind make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/dnaMotifFind' rm -f dnaMotifFind.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/dnaMotifFind' ( cd eisenInput && echo eisenInput && make clean ) eisenInput make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/eisenInput' rm -f eisenInput.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/eisenInput' ( cd emblMatrixToMotif && echo emblMatrixToMotif && make clean ) emblMatrixToMotif make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/emblMatrixToMotif' rm -f emblMatrixToMotif.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/emblMatrixToMotif' ( cd estLibStats && echo estLibStats && make clean ) estLibStats make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/estLibStats' rm -f estLibStats.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/estLibStats' ( cd expToRna && echo expToRna && make clean ) expToRna make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/expToRna' rm -f expToRna.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/expToRna' ( cd iriToControlTable && echo iriToControlTable && make clean ) iriToControlTable make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/iriToControlTable' rm -f iriToControlTable.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/iriToControlTable' ( cd iriToDnaMotif && echo iriToDnaMotif && make clean ) iriToDnaMotif make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/iriToDnaMotif' rm -f iriToDnaMotif.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/iriToDnaMotif' ( cd lib && echo lib && make clean ) lib make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/lib' rm -f improbRunInfo.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/lib' ( cd liftPromoHits && echo liftPromoHits && make clean ) liftPromoHits make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/liftPromoHits' rm -f liftPromoHits.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/liftPromoHits' ( cd motifLogo && echo motifLogo && make clean ) motifLogo make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/motifLogo' rm -f motifLogo.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/motifLogo' ( cd motifSig && echo motifSig && make clean ) motifSig make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/motifSig' rm -f motifSig.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/motifSig' ( cd orf && echo orf && make clean ) orf make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/orf' rm -f orf.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/orf' ( cd orfStats && echo orfStats && make clean ) orfStats make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/orfStats' rm -f orfStats.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/orfStats' ( cd polyInfo && echo polyInfo && make clean ) polyInfo make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/polyInfo' rm -f polyInfo.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/polyInfo' ( cd promoSeqFromCluster && echo promoSeqFromCluster && make clean ) promoSeqFromCluster make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/promoSeqFromCluster' rm -f promoSeqFromCluster.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/promoSeqFromCluster' ( cd raToCds && echo raToCds && make clean ) raToCds make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/raToCds' rm -f raToCds.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/raToCds' ( cd twinOrf && echo twinOrf && make clean ) twinOrf make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/twinOrf' rm -f twinOrf.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/twinOrf' ( cd twinOrf2 && echo twinOrf2 && make clean ) twinOrf2 make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/twinOrf2' rm -f twinOrf2.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/twinOrf2' ( cd twinOrf3 && echo twinOrf3 && make clean ) twinOrf3 make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/twinOrf3' rm -f twinOrf3.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/twinOrf3' ( cd twinOrfStats && echo twinOrfStats && make clean ) twinOrfStats make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/twinOrfStats' rm -f twinOrfStats.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/twinOrfStats' ( cd twinOrfStats2 && echo twinOrfStats2 && make clean ) twinOrfStats2 make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/twinOrfStats2' rm -f twinOrfStats2.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/twinOrfStats2' ( cd twinOrfStats3 && echo twinOrfStats3 && make clean ) twinOrfStats3 make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/twinOrfStats3' rm -f twinOrfStats3.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds/twinOrfStats3' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/geneBounds' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/genePredCheck' rm -f genePredCheck.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/genePredCheck' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/genePredHisto' rm -fr tests/output genePredHisto genePredHisto.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/genePredHisto' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/genePredSingleCover' rm -fr tests/output genePredSingleCover *.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/genePredSingleCover' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/genePredToGtf' rm -f genePredToGtf.o genePredToGtf cd tests && make clean make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/genePredToGtf/tests' rm -rf output bigout make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/genePredToGtf/tests' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/genePredToGtf' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/genePredToFakePsl' rm -f genePredToFakePsl.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/genePredToFakePsl' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/genePredToMafFrames' rm -fr tests/output genePredToMafFrames *.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/genePredToMafFrames' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/getFeatDna' rm -f getFeatDna.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/getFeatDna' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/getRna' rm -f getRna.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/getRna' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/getRnaPred' rm -f getRnaPred.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/getRnaPred' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/gigAssembler/checkAgpAndFa' rm -rf *.o ./checkAgpAndFa tests/output make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/gigAssembler/checkAgpAndFa' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/gpStats' rm -f gpStats.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/gpStats' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/gpToGtf' rm -f gpToGtf.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/gpToGtf' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/gpcrParser' rm -f gpcrParser gpcrParser.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/gpcrParser' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/gsBig' rm -f gsBig.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/gsBig' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgTablesTest' rm -f hgTablesTest.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgTablesTest' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgChroms' rm -f hgChroms.o hgChroms /var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/destdir/opt/ucsc-genome-browser/bin/hgChroms make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgChroms' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgGetAnn' rm -f hgGetAnn.o cd tests && make clean make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgGetAnn/tests' rm -rf output make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgGetAnn/tests' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgGetAnn' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgKnownGeneList' rm -f *.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgKnownGeneList' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgSelect' rm -f hgSelect.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgSelect' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgSpeciesRna' rm -f hgSpeciesRna.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgSpeciesRna' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgsql' rm -f hgsql.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgsql' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgsqlLocal' rm -f hgsqlLocal.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgsqlLocal' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgsqladmin' rm -f hgsqladmin.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgsqladmin' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgsqldump' rm -f hgsqldump.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgsqldump' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgsqldumpLocal' rm -f hgsqldumpLocal.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgsqldumpLocal' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgsqlimport' rm -f hgsqlimport.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgsqlimport' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgsqlSwapTables' rm -f hgsqlSwapTables hgsqlSwapTables.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgsqlSwapTables' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgsqlTableDate' rm -f hgsqlTableDate hgsqlTableDate.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/hgsqlTableDate' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/intronEnds' rm -f intronEnds.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/intronEnds' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/lib' rm -f acemblyClass.o affyAllExonProbe.o affyAtlas.o affy10KDetails.o affy120KDetails.o affyOffset.o affyPairs.o agp.o agpFrag.o agpGap.o alignSeqSizes.o altGraph.o altGraphX.o ancientRref.o atomDb.o axtInfo.o axtLib.o bactigPos.o hgBam.o baseMaskCommon.o bdgpExprLink.o bdgpGeneInfo.o bed.o bed5FloatScore.o bed5Pval.o bed6FloatScore.o bed8Attrs.o bed12Source.o bed12wSeq.o bedCart.o bgiGeneInfo.o bgiGeneSnp.o bgiSnp.o bioImage.o blastTab.o blastzNet.o blatServers.o borf.o borkPseudoHom.o botDelay.o cart.o cartDb.o cdsEvidence.o cdsOrtho.o cdsPick.o cdsSpec.o ccdsInfo.o ccdsNotes.o ccdsGeneMap.o celeraCoverage.o celeraDupPositive.o cgapSage/cgapSage.o cgapSage/cgapSageLib.o cgh.o chainCart.o chainDb.o chainLink.o chainNet.o chainNetDbLoad.o chicken13kInfo.o chromBins.o chr18deletions.o chromGraph.o chromGraphFactory.o chromInfo.o chromInserts.o chromKeeper.o clonePos.o codeBlast.o codeBlastScore.o cogs.o cogsxra.o columnInfo.o contigAcc.o coordConv.o cnpIafrate.o cnpIafrate2.o cnpLocke.o cnpRedon.o cnpSebat.o cnpSebat2.o cnpSharp2.o cnpSharpCutoff.o cnpSharpSample.o cnpSharp.o cpgIsland.o cpgIslandExt.o ctgPos.o ctgPos2.o bedDetail.o customFactory.o customPp.o customTrack.o cutter.o cv.o cytoBand.o dbDb.o dbRIP.o dbSnpRs.o defaultDb.o delConrad2.o delHinds2.o dgv.o dless.o dnaMotifSql.o dnaMarkovSql.o dnaProbe.o dv.o dvBed.o dvXref2.o easyGene.o ec.o ecCode.o ecAttribute.o ecAttributeCode.o encode/encodeErge.o encode/encodeErgeHssCellLines.o encode/encodeHapMapAlleleFreq.o encode/encodeIndels.o encode/encodePeak.o encode/encodeRegionInfo.o encode/encodeRegionInfoCustom.o encode/encodeRna.o encode/encodeStanfordPromoters.o encode/encodeStanfordPromotersAverage.o encode/pairedTagAlign.o encode/peptideMapping.o encode/tagAlign.o encode/wgEncodeGencodeAttrs.o encode/wgEncodeGencodeExonSupport.o encode/wgEncodeGencodeTag.o encode/wgEncodeGencodePdb.o encode/wgEncodeGencodePubMed.o encode/wgEncodeGencodeRefSeq.o encode/wgEncodeGencodeGeneSource.o encode/wgEncodeGencodeTranscriptSource.o encode/wgEncodeGencodeTranscriptSupport.o encode/wgEncodeGencodeUniProt.o encode/wgEncodeGencodePolyAFeature.o encode/wgEncodeGencodeAnnotationRemark.o encode/encodeExp.o ensFace.o ensInfo.o ensPhusionBlast.o ensXRefZfish.o est3.o estOrientInfo.o estPair.o exoFish.o expData.o expRecord.o exprBed.o fbTables.o featureBits.o fileUi.o findKGAlias.o findKGProtAlias.o fishClones.o flyBase2004Xref.o flyBaseSwissProt.o flyreg.o flyreg2.o gbExtFile.o gbWarn.o gbMiscDiff.o gbProtAnn.o gcPercent.o gbSeq.o genbank.o gencodeGeneClass.o gencodeIntron.o genMapDb.o geneBands.o geneCheck.o geneCheckDetails.o geneCheckWidget.o geneGraph.o genePred.o genePredReader.o geneSimilarities.o genoLay.o genomeRangeTreeFile.o genomicDups.o genomicSuperDups.o ggCluster.o ggDbIo.o ggDump.o ggGraph.o ggMrnaAli.o ggTypes.o glDbRep.o goa.o goaPart.o googleAnalytics.o growthCondition.o grp.o gwasCatalog.o hapmapAllelesOrtho.o hapmapAllelesSummary.o hapmapPhaseIIISummary.o hapmapSnps.o hapmapSnpsCombined.o hCommon.o hCytoBand.o hdb.o hgColors.o hgConfig.o hgExp.o hgFind.o hgFindSpec.o hgFindSpecCustom.o hgGene.o hgMaf.o hgRelate.o hgSeq.o hgdpGeo.o hPrint.o hVarSubst.o hvGfx.o HInv.o hubConnect.o hui.o humanParalog.o imageClone.o isochores.o ispyTables.o itemAttr.o itemConf.o jalview.o jaxOrtholog.o jaxQTL.o jaxQTL3.o jksql.o joiner.o jsHelper.o kg1ToKg2.o jgiGene.o kgAlias.o kgColor.o kgProtAlias.o kgXref.o knownInfo.o knownMore.o knownToSuper.o ld.o ld2.o lfs.o liftOver.o liftOverChain.o liftUp.o llaInfo.o lsSnpPdb.o lsSnpPdbChimera.o mafFrames.o mafGene.o mafSummary.o makeItemsItem.o mammalPsg.o mapSts.o mcnBreakpoints.o mdb.o metaChromGraph.o microarray.o minChromSize.o minGeneInfo.o mrnaMisMatch.o mouseOrtho.o mouseSyn.o mouseSynWhd.o mysqlTableStatus.o netAlign.o netCart.o nonCodingUi.o omimTitle.o ooUtils.o orthoAlleles.o pal.o pbStamp.o pcrResult.o pepPred.o plasEndPairs.o polyGenotype.o protFeat.o pscreen.o pseudoGeneLink.o pslReader.o pslWScore.o putaInfo.o qaSeq.o rangeTreeFile.o rankProp.o recombRate.o recombRateRat.o recombRateMouse.o refLink.o refSeqStatus.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o riken.o rhMapZfishInfo.o rikenBest.o rikenCluster.o rmskOut.o rnaFold.o rnaGene.o rnaGroup.o rnaHybridization.o rnaPLFold.o tRNAs.o gbRNAs.o snoRNAs.o lowelabPfamHit.o lowelabArkinOperonScore.o lowelabTIGROperonScore.o rnaSecStr.o tfbsConsFactors.o roughAli.o transMapStuff.o transMapInfo.o transMapGene.o transMapSrc.o sage.o sageCounts.o sageExp.o samAlignment.o sample.o sanger22extra.o sangerGene.o sangerGeneToWBGeneID.o sargassoSeaXra.o scopDes.o scoredRef.o search.o sgdAbundance.o sgdClone.o sgdDescription.o sgdOther.o simpleNucDiff.o simpleRepeat.o snp.o snp125.o snp125CodingCoordless.o snp132Ext.o snpExceptions.o snpFasta.o snpMap.o snpTmp.o snpUi.o snp125Exceptions.o snp125Ui.o softPromoter.o softberryHom.o spDb.o splignAlign.o stanMad.o stsAlias.o stsInfo.o stsInfo2.o stsInfoMouse.o stsInfoMouseNew.o stsInfoRat.o stsMap.o stsMapMouse.o stsMapMouseNew.o stsMapRat.o stsMarker.o suggest.o switchDbTss.o synMap.o synteny100000.o syntenyBerk.o syntenySanger.o sqlProg.o tfbsCons.o tfbsConsSites.o tableDescriptions.o tableStatus.o targetDb.o tfbsConsMap.o taxonDivision.o taxonGeneticCode.o taxonName.o taxonNode.o taxonXref.o tigrCmrGene.o tigrOperon.o tilingPath.o traceInfo.o trackDb.o trackDbCustom.o trackHub.o trackLayout.o trackTable.o trackVersion.o trashDir.o transRegCode.o transRegCodeCondition.o transRegCodeProbe.o txCluster.o txCommon.o txEdgeBed.o txEdgeOrtho.o txGraph.o txInfo.o txRnaAccs.o ucscRetroInfo.o ucscRetroOrtho.o validateGisaid.o vcfUi.o vegaInfo.o vegaInfoZfish.o visiGene.o vntr.o wabAli.o web.o ncRna.o wgRna.o wigAsciiToBinary.o wigDataStream.o wiggle.o wiggleCart.o wiggleUtils.o wikiLink.o wikiTrack.o yaleGencodeAssoc.o zdobnovSynt.o oreganno.o oregannoUi.o gvUi.o gv.o omicia.o protVar.o pgSnp.o alignInfo.o cddInfo.o loweutils.o cddDesc.o arCOGs.o arcogdesc.o geneTree.o megablastInfo.o pgPhenoAssoc.o pgSiftPred.o pgPolyphenPred.o variome.o; rm -f ../../lib/x86_64/jkhgap.a; make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/lib' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/liftAcross' rm -f liftAcross.o liftAcross (cd tests && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/liftAcross/tests' rm -fr testOutput.gp testErr.out testOut.bed make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/liftAcross/tests' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/liftAcross' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/liftAgp' rm -f liftAgp make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/liftAgp' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/liftFrags' rm -f liftFrags.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/liftFrags' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/liftOver' rm -f liftOver liftOver.o liftOverMerge liftOverMerge.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/liftOver' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/liftUp' rm -f liftUp.o liftUp make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/liftUp' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/lfsOverlap' rm -f lfsOverlap.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/lfsOverlap' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/makeDb' cd hgTomRough && make clean make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/makeDb/hgTomRough' rm -f hgTomRough hgTomRough.o tomRough.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/makeDb/hgTomRough' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/makeDb' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/maskOutFa' rm -f maskOutFa.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/maskOutFa' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/mdToNcbiLift' rm -f mdToNcbiLift.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/mdToNcbiLift' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/mouseStuff' cd simpleChain && make clean make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/mouseStuff/simpleChain' rm -f simpleChain simpleChain.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/mouseStuff/simpleChain' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/mouseStuff' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/mrnaToGene' rm -f mrnaToGene.o cd tests && make clean make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/mrnaToGene/tests' rm -rf output make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/mrnaToGene/tests' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/mrnaToGene' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgCeOrfToGene' rm -f hgCeOrfToGene.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgCeOrfToGene' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgClusterGenes' rm -f hgClusterGenes.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgClusterGenes' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgEmblProtLinks' rm -f hgEmblProtLinks.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgEmblProtLinks' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgExpDistance' rm -f hgExpDistance*.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgExpDistance' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgGoAssociation' rm -f hgGoAssociation.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgGoAssociation' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgKnownToSuper' rm -f hgKnownToSuper.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgKnownToSuper' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgMapToGene' rm -f hgMapToGene.o hgMapToGene make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgMapToGene' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgMapViaSwissProt' rm -f hgMapViaSwissProt.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgMapViaSwissProt' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgProtIdToGenePred' rm -f hgProtIdToGenePred.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgProtIdToGenePred' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgWormLinks' rm -f hgWormLinks.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgWormLinks' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/pepPredToFa' rm -f pepPredToFa.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/pepPredToFa' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgNearTest' rm -f hgNearTest.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgNearTest' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgNetDist' rm -f hgNetDist.o hprdP2p.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/hgNetDist' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/knownToHprd' rm -f knownToHprd.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/near/knownToHprd' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/nci60' rm -fr findStanAlignments stanToBedAndExpRecs make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/nci60' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/orthoMap' rm -f mgcFastaForBed agxToIntronBeds bedToFrames orthoMap orthoEvaluate orthoPickIntron *.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/orthoMap' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/patCount' rm -f patCount.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/patCount' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/perf' rm -f hgTracksRandom.o rangeQuery.o rangeQuery hgTracksRandom make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/perf' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein' (cd blastRecipBest && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/blastRecipBest' rm -f blastRecipBest.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/blastRecipBest' (cd gadPos && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/gadPos' rm -f gadPos.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/gadPos' (cd hmmPfamToTab && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/hmmPfamToTab' rm -f hmmPfamToTab.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/hmmPfamToTab' (cd kgAliasM && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgAliasM' rm -f kgAliasM.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgAliasM' (cd kgAliasP && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgAliasP' rm -f kgAliasP.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgAliasP' (cd kgAliasKgXref && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgAliasKgXref' rm -f kgAliasKgXref.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgAliasKgXref' (cd kgAliasRefseq && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgAliasRefseq' rm -f kgAliasRefseq.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgAliasRefseq' (cd kgProtAlias && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgProtAlias' rm -f kgProtAlias.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgProtAlias' (cd kgProtAliasNCBI && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgProtAliasNCBI' rm -f kgProtAliasNCBI.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgProtAliasNCBI' (cd kgBestMrna2 && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgBestMrna2' rm -f kgPrepBestMrna2.o kgPrepBestMrna2 kgResultBestMrna2.o kgResultBestMrna2 make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgBestMrna2' (cd kgBestRef2 && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgBestRef2' rm -f kgPrepBestRef2.o kgPrepBestRef2 kgResultBestRef2.o kgResultBestRef2 make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgBestRef2' (cd kgCheck && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgCheck' rm -f kgCheck.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgCheck' (cd kgGetCds && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgGetCds' rm -f kgGetCds.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgGetCds' (cd kgGetPep && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgGetPep' rm -f kgGetPep.o kgGetPep make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgGetPep' (cd kgPepMrna && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgPepMrna' rm -f kgPepMrna.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgPepMrna' (cd kgPick && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgPick' rm -f kgPick.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgPick' (cd kgPutBack && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgPutBack' rm -f kgPutBack.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgPutBack' (cd kgXref && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgXref' rm -f kgXref.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgXref' (cd kgXref2 && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgXref2' rm -f kgXref2.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/kgXref2' (cd pbCalDist && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/pbCalDist' rm -f pbCalDist.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/pbCalDist' (cd pbCalDistGlobal && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/pbCalDistGlobal' rm -f pbCalDistGlobal.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/pbCalDistGlobal' (cd pbCalPi && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/pbCalPi' rm -f pbCalPi.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/pbCalPi' (cd pbCalResStd && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/pbCalResStd' rm -f pbCalResStd.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/pbCalResStd' (cd pbCalResStdGlobal && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/pbCalResStdGlobal' rm -f pbCalResStdGlobal.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/pbCalResStdGlobal' (cd pbHgnc && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/pbHgnc' rm -f pbHgnc.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/pbHgnc' (cd pfamXref && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/pfamXref' rm -f pfamXref.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/pfamXref' (cd rmKGPepMrna && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/rmKGPepMrna' rm -f rmKGPepMrna.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/rmKGPepMrna' (cd scopCollapse && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/scopCollapse' rm -f scopCollapse.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/scopCollapse' (cd spDbAddVarSplice && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spDbAddVarSplice' rm -f spDbAddVarSplice.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spDbAddVarSplice' (cd spOrganism && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spOrganism' rm -f spOrganism.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spOrganism' (cd spTest && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spTest' rm -fr output spTest.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spTest' (cd spToDb && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spToDb' rm -f spToDb.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spToDb' (cd spLoadPsiBlast && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spLoadPsiBlast' rm -f spLoadPsiBlast.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spLoadPsiBlast' (cd spLoadRankProp && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spLoadRankProp' rm -f spLoadRankProp.o rankPropProt.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spLoadRankProp' (cd spToProteinsVar && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spToProteinsVar' rm -f spToProteinsVar.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spToProteinsVar' (cd spToSpXref2 && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spToSpXref2' rm -f spToSpXref2.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spToSpXref2' (cd spXref3 && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spXref3' rm -f spXref3.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spXref3' (cd spm3 && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spm3' rm -f spm3.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spm3' (cd spm6 && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spm6' rm -f spm6.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spm6' (cd spm7 && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spm7' rm -f spm7.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spm7' (cd spToProteins && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spToProteins' rm -f spToProteins.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein/spToProteins' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/protein' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslCDnaFilter' rm -f cDnaAligns.o cDnaStats.o cDnaReader.o overlapFilter.o globalNearBestFilter.o localNearBestFilter.o polyASize.o hapRegions.o pslCDnaFilter.o pslCDnaFilter usage.msg algo.msg cd tests && make clean make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslCDnaFilter/tests' rm -rf output make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslCDnaFilter/tests' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslCDnaFilter' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslCat' rm -f pslCat.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslCat' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslCheck' rm -f pslCheck.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslCheck' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslCoverage' rm -f pslCoverage.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslCoverage' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslDiff' rm -f pslSets.o pslDiff.o pslDiff cd tests && make clean make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslDiff/tests' rm -rf output make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslDiff/tests' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslDiff' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslDropOverlap' rm -f pslDropOverlap.o pslDropOverlap make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslDropOverlap' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslFilter' rm -f pslFilter.o pslFilter make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslFilter' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslFilterPrimers' rm -f pslFilterPrimers.o pslFilterPrimers make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslFilterPrimers' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslGlue' rm -f pslGlue.o pslGlue make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslGlue' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslHisto' rm -f pslHisto.o pslHisto cd tests && make clean make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslHisto/tests' rm -rf output make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslHisto/tests' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslHisto' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslHitPercent' rm -f pslHitPercent.o pslHitPercent make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslHitPercent' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslIntronsOnly' rm -f pslIntronsOnly.o pslIntronsOnly make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslIntronsOnly' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslPartition' rm -fr tests/output pslPartition pslPartition.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslPartition' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslPairs' rm -f pslPairs pslPairs.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslPairs' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslPretty' rm -f pslPretty.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslPretty' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslQuickFilter' rm -f pslQuickFilter.o pslQuickFilter make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslQuickFilter' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslRecalcMatch' rm -f pslRecalcMatch.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslRecalcMatch' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslReps' rm -f pslReps.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslReps' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslSelect' rm -f pslSelect.o cd tests && make clean make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslSelect/tests' rm -rf output make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslSelect/tests' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslSelect' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslSimp' rm -f pslSimp.o pslSimp make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslSimp' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslSort' rm -f pslSort.o pslSort make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslSort' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslSortAcc' rm -f pslSortAcc.o pslSortAcc make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslSortAcc' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslSplitOnTarget' rm -f pslSplitOnTarget.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslSplitOnTarget' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslStats' rm -f pslStats.o cd tests && make clean make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslStats/tests' rm -rf output make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslStats/tests' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslStats' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslSwap' rm -f pslSwap cd tests && make clean make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslSwap/tests' rm -rf output make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslSwap/tests' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslSwap' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslToBed' rm -f pslToBed.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslToBed' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslUnpile' rm -f pslUnpile.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslUnpile' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslxToFa' rm -f pslxToFa.o pslxToFa make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/pslxToFa' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/qa' rm -f apacheMonitor.o checkCardinality.o countNib.o \ dumpNib.o gbSeqCheck.o reviewIndexes.o seqCheck.o \ getChroms.o checkChain.o testSearch.o timePosTable.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/qa' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/qaToQac' rm -f qaToQac.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/qaToQac' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/qacAgpLift' rm -f qacAgpLift.o qacAgpLift make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/qacAgpLift' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/qacToQa' rm -f qacToQa.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/qacToQa' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/qacToWig' rm -f qacToWig.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/qacToWig' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff' mafAddIRows make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafAddIRows' rm -f mafAddIRows.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafAddIRows' mafAddQRows make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafAddQRows' rm -f mafAddQRows.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafAddQRows' mafFilter make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafFilter' rm -f mafFilter.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafFilter' mafFrag make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafFrag' rm -f mafFrag.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafFrag' mafFrags make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafFrags' rm -fr output mafFrags.o mafFrags make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafFrags' mafGene make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafGene' rm -f mafGene.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafGene' mafMeFirst make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafMeFirst' rm -f mafMeFirst.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafMeFirst' mafSpeciesList make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafSpeciesList' rm -f mafSpeciesList.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafSpeciesList' mafSpeciesSubset make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafSpeciesSubset' rm -f mafSpeciesSubset.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafSpeciesSubset' mafSplit make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafSplit' rm -f mafSplit.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafSplit' mafSplitPos make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafSplitPos' rm -f mafSplitPos.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafSplitPos' mafsInRegion make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafsInRegion' rm -f mafsInRegion.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafsInRegion' mafOrder make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafOrder' rm -f mafOrder.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/mafOrder' stageMultiz make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/stageMultiz' rm -f stageMultiz.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff/stageMultiz' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/ratStuff' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/relPairs' rm -f relPairs.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/relPairs' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/recycleDb' cd bedUp && make clean make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/recycleDb/bedUp' rm -f bedUp.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/recycleDb/bedUp' cd bedDown && make clean make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/recycleDb/bedDown' rm -f bedDown.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/recycleDb/bedDown' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/recycleDb' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/reviewSanity' rm -f reviewSanity.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/reviewSanity' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/rnaStructure' ( cd hgLoadRnaFold && echo hgLoadRnaFold && make clean ) hgLoadRnaFold make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/rnaStructure/hgLoadRnaFold' rm -f hgLoadRnaFold.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/rnaStructure/hgLoadRnaFold' ( cd rnaFoldBig && echo rnaFoldBig && make clean ) rnaFoldBig make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/rnaStructure/rnaFoldBig' rm -f rnaFoldBig.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/rnaStructure/rnaFoldBig' ( cd utrFa && echo utrFa && make clean ) utrFa make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/rnaStructure/utrFa' rm -f utrFa.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/rnaStructure/utrFa' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/rnaStructure' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/sage' rm -f addAveMedScoreToPsls.o createSageSummary.o addAveMedScoreToPsls createSageSummary make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/sage' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/scanRa' rm -f scanRa.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/scanRa' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/semiNorm' rm -f semiNorm.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/semiNorm' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/sim4big' rm -f sim4big.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/sim4big' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/snpException' rm -f snpException.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/snpException' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/snp' cleaning snpLoad make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/snp/snpLoad' rm -f affyLookup.o cnpLookup.o fetchSeq.o hapmap1.o hapmap2.o hapmapLookup.o hapmapMixed.o hapmapOrtho.o hapmapSummary.o hapmapValidate.o illuminaLookup.o illuminaLookup2.o illuminaLookup1M.o snpCheckAlleles.o snpCheckClassAndObserved.o snpCheckCluster.o snpCheckCluster2.o snpClassAndObserved.o snpCleanSeq.o snpCompareLoctype.o snpCompareWeight.o snpContigLocFilter.o snpContigLocFilter125.o snpContigLocusIdCondense.o snpContigLocusIdFilter.o snpContigLocusIdFilter125.o snpExpandAllele.o snpFinalTable.o snpFreq.o snpFunction.o snpGetDeletions.o snpGetInsertions.o snpGetSeqDup.o snpGetSimple.o snpLoadFasta.o snpLocType.o snpLocType125.o snpMissing.o snpMoltype.o snpMultiple.o snpOrtho.o snpOrthoJoin.o snpOrthoLookup.o snpPAR.o snpReadFasta.o snpReadSeq.o snpReadSeq2.o snpRefUCSC.o snpSort.o snpSplitByChrom.o snpSplitByChrom2.o snpSNP.o subSnpCondense.o trimHeader.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/snp/snpLoad' cleaning snpMask make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/snp/snpMask' rm -f snpMapToExon.o snpMaskChrom.o snpMaskFlank.o snpMaskFlankSubset.o snpMaskGenes.o seqWithInsertions.o seqWithoutDeletions.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/snp/snpMask' cleaning snpValid make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/snp/snpValid' rm -f snpValid.o rm -f snpValid rm -f *.log rm -f dump make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/snp/snpValid' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/snp' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/spideyToPsl' rm -f spideyToPsl.o spideyToPsl /var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/destdir/opt/ucsc-genome-browser/bin/spideyToPsl cd tests && make clean make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/spideyToPsl/tests' rm -rf output make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/spideyToPsl/tests' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/spideyToPsl' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/splitFa' rm -f splitFa.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/splitFa' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/splitFaIntoContigs' rm -f *.o /var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/destdir/opt/ucsc-genome-browser/bin/splitFaIntoContigs ./splitFaIntoContigs make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/splitFaIntoContigs' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/sqlToXml' rm -f sqlToXml.o rm -f test/*/out.* make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/sqlToXml' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/test' rm -f test test.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/test' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/trfBig' rm -f trfBig.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/trfBig' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds' ( cd txCdsBadBed && echo txCdsBadBed && make clean ) txCdsBadBed make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsBadBed' rm -f txCdsBadBed.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsBadBed' ( cd txCdsCluster && echo txCdsCluster && make clean ) txCdsCluster make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsCluster' rm -f txCdsCluster.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsCluster' ( cd txCdsEvFromBed && echo txCdsEvFromBed && make clean ) txCdsEvFromBed make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsEvFromBed' rm -f txCdsEvFromBed.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsEvFromBed' ( cd txCdsEvFromBorf && echo txCdsEvFromBorf && make clean ) txCdsEvFromBorf make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsEvFromBorf' rm -f txCdsEvFromBorf.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsEvFromBorf' ( cd txCdsEvFromProtein && echo txCdsEvFromProtein && make clean ) txCdsEvFromProtein make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsEvFromProtein' rm -f txCdsEvFromProtein.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsEvFromProtein' ( cd txCdsEvFromRna && echo txCdsEvFromRna && make clean ) txCdsEvFromRna make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsEvFromRna' rm -f txCdsEvFromRna.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsEvFromRna' ( cd txCdsGoodBed && echo txCdsGoodBed && make clean ) txCdsGoodBed make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsGoodBed' rm -f txCdsGoodBed.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsGoodBed' ( cd txCdsOrfInfo && echo txCdsOrfInfo && make clean ) txCdsOrfInfo make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsOrfInfo' rm -f txCdsOrfInfo.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsOrfInfo' ( cd txCdsOrtho && echo txCdsOrtho && make clean ) txCdsOrtho make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsOrtho' rm -f txCdsOrtho.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsOrtho' ( cd txCdsPick && echo txCdsPick && make clean ) txCdsPick make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsPick' rm -f txCdsPick.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsPick' ( cd txCdsPredict && echo txCdsPredict && make clean ) txCdsPredict make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsPredict' rm -f txCdsPredict.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsPredict' ( cd txCdsRaExceptions && echo txCdsRaExceptions && make clean ) txCdsRaExceptions make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsRaExceptions' rm -f txCdsRaExceptions.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsRaExceptions' ( cd txCdsRefBestEvOnly && echo txCdsRefBestEvOnly && make clean ) txCdsRefBestEvOnly make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsRefBestEvOnly' rm -f txCdsRefBestEvOnly.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsRefBestEvOnly' ( cd txCdsRepick && echo txCdsRepick && make clean ) txCdsRepick make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsRepick' rm -f txCdsRepick.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsRepick' ( cd txCdsSuspect && echo txCdsSuspect && make clean ) txCdsSuspect make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsSuspect' rm -f txCdsSuspect.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsSuspect' ( cd txCdsSvmInput && echo txCdsSvmInput && make clean ) txCdsSvmInput make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsSvmInput' rm -f txCdsSvmInput.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsSvmInput' ( cd txCdsToGene && echo txCdsToGene && make clean ) txCdsToGene make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsToGene' rm -f txCdsToGene.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsToGene' ( cd txCdsWeed && echo txCdsWeed && make clean ) txCdsWeed make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsWeed' rm -f txCdsWeed.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txCdsWeed' ( cd txInfoAssemble && echo txInfoAssemble && make clean ) txInfoAssemble make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txInfoAssemble' rm -f txInfoAssemble.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds/txInfoAssemble' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txCds' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene' txGenbankData make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGenbankData' make[3]: Nothing to be done for 'clean'. make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGenbankData' txGeneAccession make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGeneAccession' rm -f txGeneAccession.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGeneAccession' txGeneAlias make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGeneAlias' rm -f txGeneAlias.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGeneAlias' txGeneAltProt make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGeneAltProt' rm -f txGeneAltProt.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGeneAltProt' txGeneCanonical make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGeneCanonical' rm -f txGeneCanonical.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGeneCanonical' txGeneCdsMap make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGeneCdsMap' rm -f txGeneCdsMap.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGeneCdsMap' txGeneColor make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGeneColor' rm -f txGeneColor.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGeneColor' txGeneExplainUpdate1 make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGeneExplainUpdate1' rm -f txGeneExplainUpdate1.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGeneExplainUpdate1' txGeneFromBed make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGeneFromBed' rm -f txGeneFromBed.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGeneFromBed' txGeneProtAndRna make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGeneProtAndRna' rm -f txGeneProtAndRna.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGeneProtAndRna' txGeneSeparateNoncoding make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGeneSeparateNoncoding' rm -f txGeneSeparateNoncoding.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGeneSeparateNoncoding' txGeneValidation make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGeneValidation' make[3]: Nothing to be done for 'clean'. make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGeneValidation' txGeneXref make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGeneXref' rm -f txGeneXref.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene/txGeneXref' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGene' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph' agxToTxg make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/agxToTxg' rm -f agxToTxg.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/agxToTxg' bedToTxEdges make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/bedToTxEdges' rm -f bedToTxEdges.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/bedToTxEdges' txAbFragFind make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txAbFragFind' rm -f txAbFragFind.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txAbFragFind' txBedToGraph make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txBedToGraph' rm -f txBedToGraph.o makeGraph.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txBedToGraph' txOrtho make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txOrtho' rm -f txOrtho.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txOrtho' txPslFilter make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txPslFilter' rm -f txPslFilter.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txPslFilter' txPslToBed make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txPslToBed' rm -f txPslToBed.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txPslToBed' txReadRa make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txReadRa' rm -f txReadRa.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txReadRa' txWalk make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txWalk' rm -f txWalk.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txWalk' txgAddEvidence make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txgAddEvidence' rm -f txgAddEvidence.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txgAddEvidence' txgAnalyze make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txgAnalyze' rm -f txgAnalyze.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txgAnalyze' txgGoodEdges make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txgGoodEdges' rm -f txgGoodEdges.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txgGoodEdges' txgToAgx make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txgToAgx' rm -f txgToAgx.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txgToAgx' txgToXml make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txgToXml' rm -f txgToXml.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txgToXml' txgTrim make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txgTrim' rm -f txgTrim.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph/txgTrim' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/txGraph' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils' (cd bedToPsl && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/bedToPsl' rm -f bedToPsl.o (cd tests && make clean) make[4]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/bedToPsl/tests' rm -rf output make[4]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/bedToPsl/tests' make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/bedToPsl' (cd bedWeedOverlapping && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/bedWeedOverlapping' rm -f bedWeedOverlapping.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/bedWeedOverlapping' (cd chromGraphFromBin && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/chromGraphFromBin' rm -f chromGraphFromBin.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/chromGraphFromBin' (cd chromGraphToBin && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/chromGraphToBin' rm -f chromGraphToBin.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/chromGraphToBin' (cd crTreeIndexBed && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/crTreeIndexBed' rm -f crTreeIndexBed.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/crTreeIndexBed' (cd crTreeSearchBed && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/crTreeSearchBed' rm -f crTreeSearchBed.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/crTreeSearchBed' (cd gapToLift && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/gapToLift' rm -f gapToLift.o gapToLift make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/gapToLift' (cd hubCheck && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/hubCheck' rm -f hubCheck hubCheck.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/hubCheck' (cd hubPublicCheck && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/hubPublicCheck' rm -f hubPublicCheck hubPublicCheck.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/hubPublicCheck' (cd oligoMatch && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/oligoMatch' rm -f oligoMatch.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/oligoMatch' (cd positionalTblCheck && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/positionalTblCheck' rm -f positionalTblCheck.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/positionalTblCheck' (cd safePush && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/safePush' rm -f safePush.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/safePush' (cd toDev64 && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/toDev64' rm -f toDev64.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/toDev64' (cd twoBitMask && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/twoBitMask' rm -f twoBitMask.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/twoBitMask' (cd gff3ToGenePred && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/gff3ToGenePred' rm -f gff3ToGenePred gff3ToGenePred.o (cd tests && make clean) make[4]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/gff3ToGenePred/tests' rm -rf output make[4]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/gff3ToGenePred/tests' make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/gff3ToGenePred' (cd gff3ToPsl && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/gff3ToPsl' rm -f gff3ToPsl gff3ToPsl.o (cd tests && make clean) make[4]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/gff3ToPsl/tests' rm -rf output make[4]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/gff3ToPsl/tests' make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/gff3ToPsl' (cd gtfToGenePred && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/gtfToGenePred' rm -f gtfToGenePred.o (cd tests && make clean) make[4]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/gtfToGenePred/tests' rm -rf output make[4]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/gtfToGenePred/tests' make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/gtfToGenePred' (cd automation && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/automation' nothing to clean in src/hg/utils/automation/ make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/automation' (cd refreshNamedSessionCustomTracks && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/refreshNamedSessionCustomTracks' rm -f refreshNamedSessionCustomTracks.o refreshNamedSessionCustomTracks make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/refreshNamedSessionCustomTracks' (cd refSeqGet && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/refSeqGet' rm -f refSeqGet refSeqVerInfo.o refSeqGet.o (cd tests && make clean) make[4]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/refSeqGet/tests' rm -rf output make[4]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/refSeqGet/tests' make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/refSeqGet' (cd tdbQuery && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/tdbQuery' rm -f tdbQuery tdbQuery.o tdbRecord.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/tdbQuery' (cd wigBedToStep && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/wigBedToStep' rm -f wigBedToStep.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/wigBedToStep' (cd overlapSelect && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/overlapSelect' rm -f rowReader.o chromAnn.o chromAnnMap.o selectTable.o coordCols.o overlapSelect.o usage.msg overlapSelect cd tests && make clean make[4]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/overlapSelect/tests' rm -rf output make[4]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/overlapSelect/tests' make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/overlapSelect' (cd pslMap && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/pslMap' rm -f pslMap pslMap.o usage.msg (cd tests && make clean) make[4]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/pslMap/tests' rm -rf output make[4]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/pslMap/tests' make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/pslMap' (cd pslUniq && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/pslUniq' rm -f pslUniq.o pslUniq make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/pslUniq' (cd makeTrackIndex && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/makeTrackIndex' rm -f makeTrackIndex.o make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils/makeTrackIndex' find . -name '*.o' -exec rm {} \; make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/utils' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/uniqSize' rm -f uniqSize uniqSize.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/uniqSize' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/updateStsInfo' rm -f updateStsInfo updateStsInfo.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/updateStsInfo' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/visiGene/knownToVisiGene' rm -f knownToVisiGene.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/visiGene/knownToVisiGene' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/xmlCat' rm -f xmlCat.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/xmlCat' make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/xmlToSql' rm -f xmlToSql.o elStat.o rename.o tables.o rm -rf test/*/out make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg/xmlToSql' make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/hg' cd jkOwnLib && make clean make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/jkOwnLib' rm -f bandExt.o crudeali.o ffAliHelp.o ffSeedExtend.o fuzzyFind.o genoFind.o gfBlatLib.o gfClientLib.o gfInternal.o gfOut.o gfPcrLib.o gfWebLib.o ooc.o patSpace.o splix.o supStitch.o trans3.o xenbig.o xensmall.o ../lib/x86_64/jkOwnLib.a make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/jkOwnLib' cd utils && make clean make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils' aNotB make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/aNotB' rm -f aNotB.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/aNotB' addCols make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/addCols' rm -f addCols.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/addCols' ave make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/ave' rm -f ave.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/ave' aveCols make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/aveCols' rm -f aveCols.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/aveCols' bedClip make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bedClip' rm -f bedClip bedClip.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bedClip' bedCommonRegions make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bedCommonRegions' rm -f bedCommonRegions bedCommonRegions.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bedCommonRegions' bedGeneParts make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bedGeneParts' rm -f bedGeneParts bedGeneParts.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bedGeneParts' bedGraphToBigWig make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bedGraphToBigWig' rm -f bedGraphToBigWig.o bedGraphToBigWig make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bedGraphToBigWig' bedRemoveOverlap make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bedRemoveOverlap' rm -f bedRemoveOverlap bedRemoveOverlap.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bedRemoveOverlap' bedRestrictToPositions make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bedRestrictToPositions' rm -f bedRestrictToPositions bedRestrictToPositions.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bedRestrictToPositions' bedToBigBed make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bedToBigBed' rm -f bedToBigBed.o bedToBigBed rm -fr tests/output make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bedToBigBed' bigBedInfo make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bigBedInfo' rm -f bigBedInfo.o bigBedInfo make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bigBedInfo' bigBedSummary make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bigBedSummary' rm -f bigBedSummary.o bigBedSummary make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bigBedSummary' bigBedToBed make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bigBedToBed' rm -f bigBedToBed.o bigBedToBed make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bigBedToBed' bigWigAverageOverBed make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bigWigAverageOverBed' rm -f bigWigAverageOverBed bigWigAverageOverBed.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bigWigAverageOverBed' bigWigInfo make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bigWigInfo' rm -f bigWigInfo.o bigWigInfo make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bigWigInfo' bigWigMerge make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bigWigMerge' rm -f bigWigMerge bigWigMerge.o rm -rf test/output make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bigWigMerge' bigWigSummary make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bigWigSummary' rm -f bigWigSummary.o bigWigSummary make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bigWigSummary' bigWigToBedGraph make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bigWigToBedGraph' rm -f bigWigToBedGraph.o bigWigToBedGraph make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bigWigToBedGraph' bigWigToWig make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bigWigToWig' rm -f bigWigToWig bigWigToWig.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/bigWigToWig' calc make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/calc' rm -f calc.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/calc' catDir make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/catDir' rm -f catDir.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/catDir' catUncomment make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/catUncomment' rm -f catUncomment.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/catUncomment' ccCp make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/ccCp' rm -f ccCp.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/ccCp' chopFaLines make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/chopFaLines' rm -f chopFaLines.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/chopFaLines' colTransform make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/colTransform' rm -f colTransform colTransform.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/colTransform' countChars make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/countChars' rm -f countChars.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/countChars' convolve make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/convolve' rm -f convolve.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/convolve' detab make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/detab' rm -f detab.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/detab' endsInLf make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/endsInLf' rm -f endsInLf.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/endsInLf' fastqToFa make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/fastqToFa' rm -f fastqToFa.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/fastqToFa' faAlign make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faAlign' rm -f faAlign.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faAlign' faCmp make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faCmp' rm -f faCmp.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faCmp' faCount make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faCount' rm -f faCount faCount.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faCount' faFilterN make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faFilterN' rm -f faFilterN.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faFilterN' faFilter make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faFilter' (cd tests && make clean) make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faFilter/tests' rm -rf output make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faFilter/tests' make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faFilter' faFlyBaseToUcsc make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faFlyBaseToUcsc' rm -f faFlyBaseToUcsc.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faFlyBaseToUcsc' faFrag make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faFrag' rm -f faFrag.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faFrag' faGapLocs make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faGapLocs' rm -f faGapLocs.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faGapLocs' faGapSizes make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faGapSizes' rm -f faGapSizes.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faGapSizes' faNcbiToUcsc make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faNcbiToUcsc' rm -f faNcbiToUcsc.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faNcbiToUcsc' faNoise make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faNoise' rm -f faNoise.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faNoise' faOneRecord make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faOneRecord' rm -f faOneRecord.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faOneRecord' faPolyASizes make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faPolyASizes' rm -f faPolyASizes.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faPolyASizes' faRc make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faRc' rm -f faRc.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faRc' faSimplify make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faSimplify' rm -f faSimplify.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faSimplify' faSize make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faSize' rm -f faSize.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faSize' faSomeRecords make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faSomeRecords' rm -f faSomeRecords.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faSomeRecords' faSplit make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faSplit' rm -f faSplit.o faSplit make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faSplit' faToFastq make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faToFastq' rm -f faToFastq.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faToFastq' faToNib make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faToNib' rm -f faToNib.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faToNib' faToTab make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faToTab' rm -f faToTab.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faToTab' faToTwoBit make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faToTwoBit' rm -f faToTwoBit.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faToTwoBit' faTrans make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faTrans' rm -f faTrans.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faTrans' faTrimPolyA make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faTrimPolyA' rm -f faTrimPolyA.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faTrimPolyA' faTrimRead make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faTrimRead' rm -f faTrimRead.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/faTrimRead' findMotif make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/findMotif' rm -f findMotif.o findMotif make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/findMotif' fixCr make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/fixCr' rm -f fixCr.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/fixCr' gapSplit make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/gapSplit' rm -f gapSplit.o gapSplit make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/gapSplit' gffPeek make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/gffPeek' rm -f gffPeek.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/gffPeek' git-reports make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/git-reports' rm -f git-reports.o *.tmp make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/git-reports' gitTools make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/gitTools' nothing to clean in src/utils/gitTools/ make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/gitTools' headRest make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/headRest' rm -f headRest.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/headRest' htmlPics make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/htmlPics' rm -f htmlPics.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/htmlPics' htmlCheck make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/htmlCheck' rm -f htmlCheck.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/htmlCheck' jkUniq make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/jkUniq' rm -f jkUniq.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/jkUniq' lineCount make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/lineCount' rm -f lineCount.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/lineCount' newProg make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/newProg' rm -f newProg.o newProg make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/newProg' nibFrag make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/nibFrag' rm -f nibFrag.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/nibFrag' nibSize make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/nibSize' rm -f nibSize.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/nibSize' nt4Frag make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/nt4Frag' rm -f nt4Frag.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/nt4Frag' paraFetch make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/paraFetch' rm -f paraFetch.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/paraFetch' pslLiftSubrangeBlat make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/pslLiftSubrangeBlat' rm -f pslLiftSubrangeBlat pslLiftSubrangeBlat.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/pslLiftSubrangeBlat' pslToPslx make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/pslToPslx' rm -f pslToPslx.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/pslToPslx' pslToXa make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/pslToXa' rm -f pslToXa.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/pslToXa' randomLines make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/randomLines' rm -f randomLines.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/randomLines' raSqlQuery make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/raSqlQuery' rm -f raSqlQuery raSqlQuery.o raRecord.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/raSqlQuery' raToTab make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/raToTab' rm -f raToTab.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/raToTab' raToLines make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/raToLines' rm -f raToLines.o linesToRa.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/raToLines' rmFaDups make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/rmFaDups' rm -f rmFaDups.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/rmFaDups' rowsToCols make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/rowsToCols' rm -f rowsToCols.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/rowsToCols' scaffoldFaToAgp make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/scaffoldFaToAgp' rm -f scaffoldFaToAgp.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/scaffoldFaToAgp' scrambleFa make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/scrambleFa' rm -f scrambleFa.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/scrambleFa' sizeof make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/sizeof' rm -f sizeof.o sizeof make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/sizeof' spacedToTab make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/spacedToTab' rm -f spacedToTab.o out.tab out2.tab make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/spacedToTab' splitFile make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/splitFile' rm -f splitFile.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/splitFile' splitFileByColumn make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/splitFileByColumn' rm -f splitFileByColumn.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/splitFileByColumn' stringify make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/stringify' rm -f stringify.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/stringify' subChar make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/subChar' rm -f subChar.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/subChar' subColumn make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/subColumn' rm -f subColumn.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/subColumn' subs make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/subs' rm -f subs.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/subs' tableSum make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/tableSum' rm -f tableSum.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/tableSum' tailLines make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/tailLines' rm -f tailLines.o tailLines make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/tailLines' textHist2 make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/textHist2' rm -f textHist2.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/textHist2' textHistogram make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/textHistogram' rm -f textHistogram.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/textHistogram' tickToDate make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/tickToDate' rm -f tickToDate.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/tickToDate' timing make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/timing' rm -f gmtime.o localtime.o mktime.o gmtime localtime mktime make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/timing' toLower make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/toLower' rm -f toLower.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/toLower' toUpper make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/toUpper' rm -f toUpper.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/toUpper' twoBitInfo make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/twoBitInfo' rm -f twoBitInfo.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/twoBitInfo' twoBitToFa make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/twoBitToFa' rm -f twoBitToFa.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/twoBitToFa' udcCleanup make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/udcCleanup' rm -f udcCleanup.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/udcCleanup' undupFa make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/undupFa' rm -f undupFa.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/undupFa' upper make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/upper' rm -f upper.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/upper' venn make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/venn' rm -f venn.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/venn' weedLines make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/weedLines' rm -f weedLines.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/weedLines' wigCorrelate make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/wigCorrelate' rm -f wigCorrelate wigCorrelate.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/wigCorrelate' wigToBigWig make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/wigToBigWig' rm -f wigToBigWig.o wigToBigWig make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/wigToBigWig' wigTestMaker make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/wigTestMaker' rm -f wigTestMaker.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/wigTestMaker' wordLine make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/wordLine' rm -f wordLine.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/wordLine' touch non-empty-rm.o find . -name \*.o -print | xargs rm make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils' cd webBlat && make clean make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/webBlat' rm -f webBlat.o webBlat make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/webBlat' cd isPcr && make clean make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/isPcr' cd gfPcr && make clean make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/isPcr/gfPcr' rm -f gfPcr.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/isPcr/gfPcr' cd isPcr && make clean make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/isPcr/isPcr' rm -f isPcr.o make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/isPcr/isPcr' cd webPcr && make clean make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/isPcr/webPcr' rm -f webPcr.o webPcr make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/isPcr/webPcr' make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/isPcr' touch non-empty-rm.o find . -name \*.o -print | xargs rm rm -f tags TAGS make: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src' make -j1 -C src/lib make: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/lib' x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o aliType.o -c aliType.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o apacheLog.o -c apacheLog.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o asParse.o -c asParse.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axt.o -c axt.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axtAffine.o -c axtAffine.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bamFile.o -c bamFile.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o base64.o -c base64.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o basicBed.o -c basicBed.c In file included from /usr/include/string.h:494, from ../inc/common.h:33, from basicBed.c:11: In function ‘strncpy’, inlined from ‘bedParseRgb’ at basicBed.c:999:1: /usr/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 64 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bbiRead.o -c bbiRead.c bbiRead.c: In function ‘bbiSummaryArrayFromFull’: bbiRead.c:550:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 550 | if (intervalList != NULL); | ^~ bbiRead.c:551:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 551 | { | ^ bbiRead.c: In function ‘bbiTotalSummary’: bbiRead.c:703:34: warning: variable ‘chromEnd’ set but not used [-Wunused-but-set-variable] 703 | bits32 chromId, chromStart, chromEnd; | ^~~~~~~~ bbiRead.c:703:22: warning: variable ‘chromStart’ set but not used [-Wunused-but-set-variable] 703 | bits32 chromId, chromStart, chromEnd; | ^~~~~~~~~~ bbiRead.c:703:13: warning: variable ‘chromId’ set but not used [-Wunused-but-set-variable] 703 | bits32 chromId, chromStart, chromEnd; | ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bbiWrite.o -c bbiWrite.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bigBed.o -c bigBed.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o binRange.o -c binRange.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bits.o -c bits.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o blastOut.o -c blastOut.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o blastParse.o -c blastParse.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o boxClump.o -c boxClump.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o boxLump.o -c boxLump.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bPlusTree.o -c bPlusTree.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bwgCreate.o -c bwgCreate.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bwgQuery.o -c bwgQuery.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bwgValsOnChrom.o -c bwgValsOnChrom.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o cda.o -c cda.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chain.o -c chain.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainBlock.o -c chainBlock.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainConnect.o -c chainConnect.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainToAxt.o -c chainToAxt.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainToPsl.o -c chainToPsl.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o cheapcgi.o -c cheapcgi.c cheapcgi.c: In function ‘cgiParseMultipart’: cheapcgi.c:358:75: warning: variable ‘ct’ set but not used [-Wunused-but-set-variable] 358 | har *cd = NULL, *cdMain = NULL, *cdName = NULL, *cdFileName = NULL, *ct = NULL; | ^~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o cirTree.o -c cirTree.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o codebias.o -c codebias.c codebias.c: In function ‘codonFindFrame’: codebias.c:104:8: warning: variable ‘logProbs’ set but not used [-Wunused-but-set-variable] 104 | double logProbs[3]; | ^~~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o colHash.o -c colHash.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o common.o -c common.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o correlate.o -c correlate.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o crTree.o -c crTree.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dgRange.o -c dgRange.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o diGraph.o -c diGraph.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dlist.o -c dlist.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dnaLoad.o -c dnaLoad.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dnaMarkov.o -c dnaMarkov.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dnaMotif.o -c dnaMotif.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dnaseq.o -c dnaseq.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dnautil.o -c dnautil.c dnautil.c: In function ‘findHeadPolyTMaybeMask’: dnautil.c:942:5: warning: variable ‘pastPoly’ set but not used [-Wunused-but-set-variable] 942 | int pastPoly = 0; | ^~~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dtdParse.o -c dtdParse.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dystring.o -c dystring.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o emblParse.o -c emblParse.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o errCatch.o -c errCatch.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o errabort.o -c errabort.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fa.o -c fa.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ffAli.o -c ffAli.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ffScore.o -c ffScore.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o filePath.o -c filePath.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fixColor.o -c fixColor.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o flydna.o -c flydna.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fof.o -c fof.c fof.c: In function ‘fofMake’: fof.c:480:16: warning: variable ‘itemSize’ set but not used [-Wunused-but-set-variable] 480 | int i, fileIx, itemSize; | ^~~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgCourier10.o -c font/mgCourier10.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgCourier12.o -c font/mgCourier12.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgCourier14.o -c font/mgCourier14.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgCourier18.o -c font/mgCourier18.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgCourier24.o -c font/mgCourier24.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgCourier34.o -c font/mgCourier34.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgCourier8.o -c font/mgCourier8.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgHelvetica10.o -c font/mgHelvetica10.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgHelvetica12.o -c font/mgHelvetica12.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgHelvetica14.o -c font/mgHelvetica14.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgHelvetica18.o -c font/mgHelvetica18.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgHelvetica24.o -c font/mgHelvetica24.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgHelvetica34.o -c font/mgHelvetica34.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgHelvetica8.o -c font/mgHelvetica8.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgHelveticaBold10.o -c font/mgHelveticaBold10.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgHelveticaBold12.o -c font/mgHelveticaBold12.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgHelveticaBold14.o -c font/mgHelveticaBold14.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgHelveticaBold18.o -c font/mgHelveticaBold18.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgHelveticaBold24.o -c font/mgHelveticaBold24.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgHelveticaBold34.o -c font/mgHelveticaBold34.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgHelveticaBold8.o -c font/mgHelveticaBold8.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgSixhi6.o -c font/mgSixhi6.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgSail8.o -c font/mgSail8.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgTimes10.o -c font/mgTimes10.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgTimes12.o -c font/mgTimes12.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgTimes14.o -c font/mgTimes14.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgTimes18.o -c font/mgTimes18.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgTimes24.o -c font/mgTimes24.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgTimes34.o -c font/mgTimes34.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgTimes8.o -c font/mgTimes8.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o font/mgMenlo12.o -c font/mgMenlo12.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fuzzyShow.o -c fuzzyShow.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gapCalc.o -c gapCalc.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gdf.o -c gdf.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gemfont.o -c gemfont.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o genomeRangeTree.o -c genomeRangeTree.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfNet.o -c gfNet.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gff.o -c gff.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gff3.o -c gff3.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfxPoly.o -c gfxPoly.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gifLabel.o -c gifLabel.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hacTree.o -c hacTree.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hash.o -c hash.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o histogram.o -c histogram.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hmmPfamParse.o -c hmmPfamParse.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hmmstats.o -c hmmstats.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o htmlPage.o -c htmlPage.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o htmshell.o -c htmshell.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o https.o -c https.c https.c:23:13: warning: ‘openssl_locking_callback’ defined but not used [-Wunused-function] 23 | static void openssl_locking_callback(int mode, int n, const char * file, int line) | ^~~~~~~~~~~~~~~~~~~~~~~~ https.c:18:22: warning: ‘openssl_id_callback’ defined but not used [-Wunused-function] 18 | static unsigned long openssl_id_callback(void) | ^~~~~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o intExp.o -c intExp.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o intValTree.o -c intValTree.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o internet.o -c internet.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o itsa.o -c itsa.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o jointalign.o -c jointalign.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o jpegSize.o -c jpegSize.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o keys.o -c keys.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o knetUdc.o -c knetUdc.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o kxTok.o -c kxTok.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o linefile.o -c linefile.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o localmem.o -c localmem.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o log.o -c log.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o maf.o -c maf.c maf.c: In function ‘mafFlipStrand’: maf.c:739:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 739 | if (mc->text != NULL) | ^~ maf.c:741:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 741 | if (mc->quality != NULL) | ^~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mafFromAxt.o -c mafFromAxt.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mafScore.o -c mafScore.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o md5.o -c md5.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o memalloc.o -c memalloc.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o memgfx.o -c memgfx.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o metaWig.o -c metaWig.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mgCircle.o -c mgCircle.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mgPolygon.o -c mgPolygon.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mime.o -c mime.c mime.c: In function ‘parseMultiParts’: mime.c:600:13: warning: variable ‘toobig’ set but not used [-Wunused-but-set-variable] 600 | boolean toobig=FALSE; | ^~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o net.o -c net.c net.c: In function ‘netConnectWithTimeout’: net.c:88:31: warning: passing argument 3 to restrict-qualified parameter aliases with argument 4 [-Wrestrict] 88 | res = select(sd+1, NULL, &mySet, &mySet, &lTime); | ^~~~~~ ~~~~~~ net.c: In function ‘netSkipHttpHeaderLinesWithRedirect’: net.c:1329:8: warning: variable ‘version’ set but not used [-Wunused-but-set-variable] 1329 | char *version, *code; | ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o nib.o -c nib.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o nibTwo.o -c nibTwo.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o nt4.o -c nt4.c nt4.c: In function ‘newNt4’: nt4.c:35:6: warning: variable ‘unpacked’ set but not used [-Wunused-but-set-variable] 35 | DNA *unpacked; | ^~~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o numObscure.o -c numObscure.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o obscure.o -c obscure.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o oldGff.o -c oldGff.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o oligoTm.o -c oligoTm.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o options.o -c options.c options.c: In function ‘validateOption’: options.c:52:11: warning: variable ‘discardMe’ set but not used [-Wunused-but-set-variable] 52 | long long discardMe = 0; | ^~~~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o osunix.o -c osunix.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pairHmm.o -c pairHmm.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o peakCluster.o -c peakCluster.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o phyloTree.o -c phyloTree.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pipeline.o -c pipeline.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o portimpl.o -c portimpl.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pngwrite.o -c pngwrite.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o psGfx.o -c psGfx.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o psPoly.o -c psPoly.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pscmGfx.o -c pscmGfx.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o psl.o -c psl.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslGenoShow.o -c pslGenoShow.c pslGenoShow.c: In function ‘pslShowAlignmentStranded2’: pslGenoShow.c:31:36: warning: variable ‘tcfmEnd’ set but not used [-Wunused-but-set-variable] 31 | int qcfmStart, qcfmEnd, tcfmStart, tcfmEnd; | ^~~~~~~ pslGenoShow.c:31:16: warning: variable ‘qcfmEnd’ set but not used [-Wunused-but-set-variable] 31 | int qcfmStart, qcfmEnd, tcfmStart, tcfmEnd; | ^~~~~~~ pslGenoShow.c:30:36: warning: variable ‘tbafEnd’ set but not used [-Wunused-but-set-variable] 30 | int qbafStart, qbafEnd, tbafStart, tbafEnd; | ^~~~~~~ pslGenoShow.c:30:16: warning: variable ‘qbafEnd’ set but not used [-Wunused-but-set-variable] 30 | int qbafStart, qbafEnd, tbafStart, tbafEnd; | ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslShow.o -c pslShow.c pslShow.c: In function ‘pslShowAlignmentStranded’: pslShow.c:25:36: warning: variable ‘tcfmEnd’ set but not used [-Wunused-but-set-variable] 25 | int qcfmStart, qcfmEnd, tcfmStart, tcfmEnd; | ^~~~~~~ pslShow.c:25:16: warning: variable ‘qcfmEnd’ set but not used [-Wunused-but-set-variable] 25 | int qcfmStart, qcfmEnd, tcfmStart, tcfmEnd; | ^~~~~~~ pslShow.c:24:36: warning: variable ‘tbafEnd’ set but not used [-Wunused-but-set-variable] 24 | int qbafStart, qbafEnd, tbafStart, tbafEnd; | ^~~~~~~ pslShow.c:24:16: warning: variable ‘qbafEnd’ set but not used [-Wunused-but-set-variable] 24 | int qbafStart, qbafEnd, tbafStart, tbafEnd; | ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslTbl.o -c pslTbl.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslTransMap.o -c pslTransMap.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pthreadWrap.o -c pthreadWrap.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o qa.o -c qa.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o quickHeap.o -c quickHeap.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o quotedP.o -c quotedP.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ra.o -c ra.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rainbow.o -c rainbow.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rbTree.o -c rbTree.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rangeTree.o -c rangeTree.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o regexHelper.o -c regexHelper.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o repMask.o -c repMask.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rle.o -c rle.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rnautil.o -c rnautil.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rqlEval.o -c rqlEval.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rqlParse.o -c rqlParse.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rudp.o -c rudp.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o scoreWindow.o -c scoreWindow.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o seg.o -c seg.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o seqOut.o -c seqOut.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o seqStats.o -c seqStats.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o servBrcMcw.o -c servBrcMcw.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o servCrunx.o -c servCrunx.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o servcis.o -c servcis.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o servcl.o -c servcl.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o servmsII.o -c servmsII.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o servpws.o -c servpws.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o shaRes.o -c shaRes.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o slog.o -c slog.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o snof.o -c snof.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o snofmake.o -c snofmake.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o snofsig.o -c snofsig.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o spaceSaver.o -c spaceSaver.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o spacedColumn.o -c spacedColumn.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o spacedSeed.o -c spacedSeed.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o splatAli.o -c splatAli.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o sqlList.o -c sqlList.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o sqlNum.o -c sqlNum.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o subText.o -c subText.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o sufa.o -c sufa.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o sufx.o -c sufx.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o synQueue.o -c synQueue.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o tabRow.o -c tabRow.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o textOut.o -c textOut.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o tokenizer.o -c tokenizer.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o trix.o -c trix.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o twoBit.o -c twoBit.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o udc.o -c udc.c udc.c: In function ‘udcBitmapOpen’: udc.c:533:8: warning: variable ‘reserved64’ set but not used [-Wunused-but-set-variable] 533 | bits64 reserved64; | ^~~~~~~~~~ udc.c:532:8: warning: variable ‘reserved32’ set but not used [-Wunused-but-set-variable] 532 | bits32 reserved32; | ^~~~~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o vcf.o -c vcf.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o vGfx.o -c vGfx.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o vPng.o -c vPng.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o verbose.o -c verbose.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o wildcmp.o -c wildcmp.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o wormdna.o -c wormdna.c wormdna.c: In function ‘wormGeneForOrf’: wormdna.c:605:13: warning: variable ‘wordCount’ set but not used [-Wunused-but-set-variable] 605 | int wordCount; | ^~~~~~~~~ In file included from /usr/include/string.h:494, from ../inc/common.h:33, from wormdna.c:8: In function ‘strncpy’, inlined from ‘wormIsGeneName’ at wormdna.c:524:1: /usr/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 128 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘wormParseChromRange’ at wormdna.c:881:1: /usr/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 128 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xAli.o -c xAli.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xa.o -c xa.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xap.o -c xap.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xenshow.o -c xenshow.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xmlEscape.o -c xmlEscape.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xp.o -c xp.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o zlibFace.o -c zlibFace.c ar rcus x86_64/jkweb.a aliType.o apacheLog.o asParse.o axt.o axtAffine.o bamFile.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o bwgValsOnChrom.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dystring.o emblParse.o errCatch.o errabort.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o font/mgCourier10.o font/mgCourier12.o font/mgCourier14.o font/mgCourier18.o font/mgCourier24.o font/mgCourier34.o font/mgCourier8.o font/mgHelvetica10.o font/mgHelvetica12.o font/mgHelvetica14.o font/mgHelvetica18.o font/mgHelvetica24.o font/mgHelvetica34.o font/mgHelvetica8.o font/mgHelveticaBold10.o font/mgHelveticaBold12.o font/mgHelveticaBold14.o font/mgHelveticaBold18.o font/mgHelveticaBold24.o font/mgHelveticaBold34.o font/mgHelveticaBold8.o font/mgSixhi6.o font/mgSail8.o font/mgTimes10.o font/mgTimes12.o font/mgTimes14.o font/mgTimes18.o font/mgTimes24.o font/mgTimes34.o font/mgTimes8.o font/mgMenlo12.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o hacTree.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o https.o intExp.o intValTree.o internet.o itsa.o jointalign.o jpegSize.o keys.o knetUdc.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o memalloc.o memgfx.o metaWig.o mgCircle.o mgPolygon.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o peakCluster.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rainbow.o rbTree.o rangeTree.o regexHelper.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vcf.o vGfx.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o make: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/lib' make -j1 -C src/jkOwnLib make: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/jkOwnLib' x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bandExt.o -c bandExt.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o crudeali.o -c crudeali.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ffAliHelp.o -c ffAliHelp.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ffSeedExtend.o -c ffSeedExtend.c ffSeedExtend.c: In function ‘clumpToExactRange’: ffSeedExtend.c:217:57: warning: variable ‘lastTe’ set but not used [-Wunused-but-set-variable] 217 | BIOPOL *lastQs = NULL, *lastQe = NULL, *lastTs = NULL, *lastTe = NULL; | ^~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fuzzyFind.o -c fuzzyFind.c fuzzyFind.c: In function ‘rwFindTilesBetween’: fuzzyFind.c:1170:5: warning: variable ‘tileIx’ set but not used [-Wunused-but-set-variable] 1170 | int tileIx; | ^~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o genoFind.o -c genoFind.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfBlatLib.o -c gfBlatLib.c gfBlatLib.c: In function ‘clumpToHspRange’: gfBlatLib.c:728:57: warning: variable ‘lastTe’ set but not used [-Wunused-but-set-variable] 728 | BIOPOL *lastQs = NULL, *lastQe = NULL, *lastTs = NULL, *lastTe = NULL; | ^~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfClientLib.o -c gfClientLib.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfInternal.o -c gfInternal.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfOut.o -c gfOut.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfPcrLib.o -c gfPcrLib.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfWebLib.o -c gfWebLib.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ooc.o -c ooc.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o patSpace.o -c patSpace.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o splix.o -c splix.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o supStitch.o -c supStitch.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o trans3.o -c trans3.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xenbig.o -c xenbig.c xenbig.c: In function ‘xStitch’: xenbig.c:885:13: warning: variable ‘partCount’ set but not used [-Wunused-but-set-variable] 885 | int partCount; | ^~~~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xensmall.o -c xensmall.c xensmall.c: In function ‘xenAlignSmall’: xensmall.c:223:5: warning: variable ‘matchOff’ set but not used [-Wunused-but-set-variable] 223 | int matchOff, qSlipOff, tSlipOff; | ^~~~~~~~ ar rcus ../lib/x86_64/jkOwnLib.a bandExt.o crudeali.o ffAliHelp.o ffSeedExtend.o fuzzyFind.o genoFind.o gfBlatLib.o gfClientLib.o gfInternal.o gfOut.o gfPcrLib.o gfWebLib.o ooc.o patSpace.o splix.o supStitch.o trans3.o xenbig.o xensmall.o make: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/jkOwnLib' make -j1 -C src/utils/stringify make: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/stringify' x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o stringify.o -c stringify.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/destdir/opt/ucsc-genome-browser/bin/stringify stringify.o ../../lib/x86_64/jkweb.a -pthread -lssl -lcrypto -lpng -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/destdir/opt/ucsc-genome-browser/bin/stringify skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/destdir/opt/ucsc-genome-browser/bin/stringify make: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/utils/stringify' make -j1 -C src blatSuite make: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src' cd lib && make make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/lib' ar rcus x86_64/jkweb.a aliType.o apacheLog.o asParse.o axt.o axtAffine.o bamFile.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o bwgValsOnChrom.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dystring.o emblParse.o errCatch.o errabort.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o font/mgCourier10.o font/mgCourier12.o font/mgCourier14.o font/mgCourier18.o font/mgCourier24.o font/mgCourier34.o font/mgCourier8.o font/mgHelvetica10.o font/mgHelvetica12.o font/mgHelvetica14.o font/mgHelvetica18.o font/mgHelvetica24.o font/mgHelvetica34.o font/mgHelvetica8.o font/mgHelveticaBold10.o font/mgHelveticaBold12.o font/mgHelveticaBold14.o font/mgHelveticaBold18.o font/mgHelveticaBold24.o font/mgHelveticaBold34.o font/mgHelveticaBold8.o font/mgSixhi6.o font/mgSail8.o font/mgTimes10.o font/mgTimes12.o font/mgTimes14.o font/mgTimes18.o font/mgTimes24.o font/mgTimes34.o font/mgTimes8.o font/mgMenlo12.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o hacTree.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o https.o intExp.o intValTree.o internet.o itsa.o jointalign.o jpegSize.o keys.o knetUdc.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o memalloc.o memgfx.o metaWig.o mgCircle.o mgPolygon.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o peakCluster.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rainbow.o rbTree.o rangeTree.o regexHelper.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vcf.o vGfx.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/lib' cd jkOwnLib && make make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/jkOwnLib' make[1]: '../lib/x86_64/jkOwnLib.a' is up to date. make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/jkOwnLib' cd blat && make make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/blat' x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o blat.o -c blat.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/destdir/opt/ucsc-genome-browser/bin/blat blat.o ../lib/x86_64/jkOwnLib.a ../lib/x86_64/jkweb.a -pthread -lssl -lcrypto -lpng -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/destdir/opt/ucsc-genome-browser/bin/blat skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/destdir/opt/ucsc-genome-browser/bin/blat make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/blat' cd gfClient && make make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/gfClient' x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfClient.o -c gfClient.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/destdir/opt/ucsc-genome-browser/bin/gfClient gfClient.o ../lib/x86_64/jkOwnLib.a ../lib/x86_64/jkweb.a -pthread -lssl -lcrypto -lpng -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/destdir/opt/ucsc-genome-browser/bin/gfClient skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/destdir/opt/ucsc-genome-browser/bin/gfClient make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/gfClient' cd gfServer && make make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/gfServer' x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfServer.o -c gfServer.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/destdir/opt/ucsc-genome-browser/bin/gfServer gfServer.o ../lib/x86_64/jkOwnLib.a ../lib/x86_64/jkweb.a -pthread -lssl -lcrypto -lpng -lm echo 'skipping strip' /var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/destdir/opt/ucsc-genome-browser/bin/gfServer skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/destdir/opt/ucsc-genome-browser/bin/gfServer make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/gfServer' cd webBlat && make make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/webBlat' x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o webBlat.o -c webBlat.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wl,-O1 -Wl,--as-needed -o webBlat webBlat.o ../lib/x86_64/jkOwnLib.a ../lib/x86_64/jkweb.a -pthread -lssl -lcrypto -lpng -lm /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: ../lib/x86_64/jkweb.a(htmshell.o):(.bss+0x20): multiple definition of `htmlRecover'; webBlat.o:(.bss+0x20): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: ../lib/x86_64/jkweb.a(portimpl.o):(.bss+0x0): multiple definition of `htmlRecover'; webBlat.o:(.bss+0x20): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: ../lib/x86_64/jkweb.a(pslShow.o):(.bss+0x0): multiple definition of `htmlRecover'; webBlat.o:(.bss+0x20): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: ../lib/x86_64/jkweb.a(seqOut.o):(.bss+0x0): multiple definition of `htmlRecover'; webBlat.o:(.bss+0x20): first defined here collect2: error: ld returned 1 exit status make[1]: *** [makefile:10: webBlat] Error 1 make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src/webBlat' make: *** [makefile:44: blatSuite] Error 2 make: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent/src' * ERROR: sci-biology/ucsc-genome-browser-260-r1::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-biology/ucsc-genome-browser-260-r1::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-biology/ucsc-genome-browser-260-r1::gentoo'`. * The complete build log is located at '/var/log/portage/sci-biology:ucsc-genome-browser-260-r1:20200203-165901.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/temp/environment'. * Working directory: '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent' * S: '/var/tmp/portage/sci-biology/ucsc-genome-browser-260-r1/work/kent'