* Package: sci-chemistry/prekin-6.51.081122-r1 * Repository: gentoo * Maintainer: sci-chemistry@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>> Unpacking source... >>> Unpacking prekin.6.51.081122.src.tgz to /var/tmp/portage/sci-chemistry/prekin-6.51.081122-r1/work >>> Source unpacked in /var/tmp/portage/sci-chemistry/prekin-6.51.081122-r1/work >>> Preparing source in /var/tmp/portage/sci-chemistry/prekin-6.51.081122-r1/work/prekin.6.51.081122 ... * Applying 6.51.081122-Makefile.patch ... [ ok ] * Applying 6.51.081122-overflow.patch ... [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-chemistry/prekin-6.51.081122-r1/work/prekin.6.51.081122 ... >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-chemistry/prekin-6.51.081122-r1/work/prekin.6.51.081122 ... make -j1 nogui x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PKINANGL.o PKINANGL.c PKINANGL.c:1443:1: warning: return type defaults to ‘int’ [-Wimplicit-int] 1443 | constructcircle(float Cxyz[SEGMENTS][3], float Axyz[3], float Bxyz[3], float radius) | ^~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PKINCRTL.o PKINCRTL.c PKINCRTL.c: In function ‘flowControl’: PKINCRTL.c:59:20: warning: implicit declaration of function ‘TickCount’ [-Wimplicit-function-declaration] 59 | OldTickCounts[0] = TickCount(); | ^~~~~~~~~ PKINCRTL.c:1277:11: warning: implicit declaration of function ‘getkeydownstate’ [-Wimplicit-function-declaration] 1277 | if( getkeydownstate() ) /*PKMCMAIN.C PKPCMAIN.C*/ | ^~~~~~~~~~~~~~~ PKINCRTL.c:1697:8: warning: implicit declaration of function ‘AdjustMenus’ [-Wimplicit-function-declaration] 1697 | AdjustMenus(); /*____MENU.c*/ | ^~~~~~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PKINCSBS.o PKINCSBS.c PKINCSBS.c: In function ‘pperptobase’: PKINCSBS.c:2808:49: warning: format not a string literal and no format arguments [-Wformat-security] 2808 | sprintf(colr,colorscale[Ncolorscale].color); /*high value default*/ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ PKINCSBS.c:2813:45: warning: format not a string literal and no format arguments [-Wformat-security] 2813 | sprintf(colr,colorscale[j].color); | ~~~~~~~~~~~~~^~~~~~ PKINCSBS.c: In function ‘Bcoloredoutput’: PKINCSBS.c:3196:45: warning: format not a string literal and no format arguments [-Wformat-security] 3196 | sprintf(color,colorscale[Ncolorscale].color); /*high value default*/ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ PKINCSBS.c:3201:44: warning: format not a string literal and no format arguments [-Wformat-security] 3201 | sprintf(color,colorscale[ncol].color); | ~~~~~~~~~~~~~~~~^~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PKINCSUB.o PKINCSUB.c PKINCSUB.c: In function ‘storecyssg’: PKINCSUB.c:2727:28: warning: format ‘%d’ expects argument of type ‘int’, but argument 8 has type ‘char *’ [-Wformat=] 2727 | sprintf(alertstr,"No room in cys sg array for:" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 2730 | ,sub[natom],rins[natom],x[natom],y[natom],z[natom]); | ~~~~~~~~~~~ | | | char * PKINCSUB.c:2728:46: note: format string is defined here 2728 | CRLF"%s|%s|%s|%s|%s|%d|%f %f %f" | ~^ | | | int | %s PKINCSUB.c: In function ‘evalatomrecord’: PKINCSUB.c:2018:38: warning: iteration 2 invokes undefined behavior [-Waggressive-loop-optimizations] 2018 | for(j=0; j< 3; j++){subnext[j] = sub[n][j];} /*2char 070926*/ | ~~~~~~~~~~~^~~~~~~~~~~ PKINCSUB.c:2018:6: note: within this loop 2018 | for(j=0; j< 3; j++){subnext[j] = sub[n][j];} /*2char 070926*/ | ^~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PKINCOUT.o PKINCOUT.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PKINMENU.o PKINMENU.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PKINROTL.o PKINROTL.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PKINDLOG.o PKINDLOG.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PKINFILE.o PKINFILE.c PKINFILE.c: In function ‘prepareinputfile’: PKINFILE.c:131:71: warning: format ‘%s’ expects a matching ‘char *’ argument [-Wformat=] 131 | sprintf(alertstr,"Prekin has failed to open input file: %s\n"); | ~^ | | | char * PKINFILE.c: In function ‘selectfiles’: PKINFILE.c:190:16: warning: implicit declaration of function ‘AdjustMenus’ [-Wimplicit-function-declaration] 190 | if(!Lquiet) AdjustMenus(); /*PKMCMENU.C*/ | ^~~~~~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PKINHBND.o PKINHBND.c PKINHBND.c: In function ‘connecthbonds’: PKINHBND.c:220:38: warning: implicit declaration of function ‘getmactextselect’ [-Wimplicit-function-declaration] 220 | if(icountrewinds == 1 && IMAC) getmactextselect(); | ^~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PKINHY36.o PKINHY36.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PKININPT.o PKININPT.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PKININIT.o PKININIT.c PKININIT.c: In function ‘getversion’: PKININIT.c:305:50: warning: format ‘%s’ expects a matching ‘char *’ argument [-Wformat=] 305 | sprintf(version,"version %.2f,%s dated: %s%s" | ~^ | | | char * x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PKINRIBB.o PKINRIBB.c PKINRIBB.c: In function ‘constructsectionribbons’: PKINRIBB.c:2979:53: warning: format not a string literal and no format arguments [-Wformat-security] 2979 | sprintf(color,colorscale[Ncolorscale].color); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ PKINRIBB.c: In function ‘buildsectionguides’: PKINRIBB.c:1239:60: warning: iteration 2 invokes undefined behavior [-Waggressive-loop-optimizations] 1239 | nm1resptr->rinsrib[j] = theribresptr->rinsrib[j]; | ~~~~~~~~~~~~~~~~~~~~~^~~ PKINRIBB.c:1236:12: note: within this loop 1236 | for(j=0;j<3;j++) /*2char + endstr 070926*/ | ^~~ PKINRIBB.c:1270:57: warning: iteration 2 invokes undefined behavior [-Waggressive-loop-optimizations] 1270 | nm2resptr->rinsrib[j] = nm1resptr->rinsrib[j]; | ~~~~~~~~~~~~~~~~~~^~~ PKINRIBB.c:1267:12: note: within this loop 1267 | for(j=0;j<3;j++) /*2char + endstr 070926*/ | ^~~ PKINRIBB.c:1301:57: warning: iteration 2 invokes undefined behavior [-Waggressive-loop-optimizations] 1301 | nm3resptr->rinsrib[j] = nm1resptr->rinsrib[j]; | ~~~~~~~~~~~~~~~~~~^~~ PKINRIBB.c:1298:12: note: within this loop 1298 | for(j=0;j<3;j++) /*2char + endstr 070926*/ | ^~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PKINRNGE.o PKINRNGE.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PKINRSUB.o PKINRSUB.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PKINSCRT.o PKINSCRT.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PKINSPOS.o PKINSPOS.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PKINUTIL.o PKINUTIL.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PUXMFILE.o PUXMFILE.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PUXMMAIN.o PUXMMAIN.c PUXMMAIN.c:11:1: warning: return type defaults to ‘int’ [-Wimplicit-int] 11 | main(int argc, char** argv) | ^~~~ PUXMMAIN.c: In function ‘main’: PUXMMAIN.c:19:3: warning: implicit declaration of function ‘mainsetup’ [-Wimplicit-function-declaration] 19 | mainsetup(&argc, argv); /*____INIT.c*/ | ^~~~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PUXMINIT.o PUXMINIT.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PUXMDLOG.o PUXMDLOG.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PUXMMENU.o PUXMMENU.c PUXMMENU.c: In function ‘launchcurrentkinemage’: PUXMMENU.c:96:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] 96 | system(word); | ^~~~~~~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PUXMOUTP.o PUXMOUTP.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PUXMTEXT.o PUXMTEXT.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -c -o PUXMLNX.o PUXMLNX.c x86_64-pc-linux-gnu-gcc -o prekin -O2 -pipe -march=native -fno-common -I/usr/X11R6/include -D NOGUI -I/usr/X11R6/include -Wl,-O1 -Wl,--as-needed PKINANGL.o PKINCRTL.o PKINCSBS.o PKINCSUB.o PKINCOUT.o PKINMENU.o PKINROTL.o PKINDLOG.o PKINFILE.o PKINHBND.o PKINHY36.o PKININPT.o PKININIT.o PKINRIBB.o PKINRNGE.o PKINRSUB.o PKINSCRT.o PKINSPOS.o PKINUTIL.o PUXMFILE.o PUXMMAIN.o PUXMINIT.o PUXMDLOG.o PUXMMENU.o PUXMOUTP.o PUXMTEXT.o PUXMLNX.o -L/usr/X11R6/lib -L/usr/lib64 -L/usr/X11R6/lib -lXmu -lXt -lSM -lICE -lXext -lX11 -ldl -lm -pthread /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: PUXMMAIN.o:(.bss+0x2789c): multiple definition of `Lribbonnew'; PKINRIBB.o:(.bss+0x38): first defined here collect2: error: ld returned 1 exit status make: *** [Makefile:35: nogui] Error 1 * ERROR: sci-chemistry/prekin-6.51.081122-r1::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-chemistry/prekin-6.51.081122-r1::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-chemistry/prekin-6.51.081122-r1::gentoo'`. * The complete build log is located at '/var/log/portage/sci-chemistry:prekin-6.51.081122-r1:20200129-200231.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/prekin-6.51.081122-r1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/prekin-6.51.081122-r1/temp/environment'. * Working directory: '/var/tmp/portage/sci-chemistry/prekin-6.51.081122-r1/work/prekin.6.51.081122' * S: '/var/tmp/portage/sci-chemistry/prekin-6.51.081122-r1/work/prekin.6.51.081122'