sci-biology:phylip-3.696-r2:20200129-000011.log

sci-biology:phylip-3.696-r2:20200129-000011.log (text/plain), 2.91 KB, created by Toralf Förster on 2020-01-29 17:43:00 UTC

 * Package:    sci-biology/phylip-3.696-r2
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking phylip-3.696.tar.gz to /var/tmp/portage/sci-biology/phylip-3.696-r2/work
>>> Source unpacked in /var/tmp/portage/sci-biology/phylip-3.696-r2/work
>>> Preparing source in /var/tmp/portage/sci-biology/phylip-3.696-r2/work/phylip-3.696/src ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/phylip-3.696-r2/work/phylip-3.696/src ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/phylip-3.696-r2/work/phylip-3.696/src ...
make -j1 -j1 CC=x86_64-pc-linux-gnu-gcc DC=x86_64-pc-linux-gnu-gcc 'CFLAGS=-O2 -pipe -march=native -fno-common -Wno-unused-result' all put 
Building PHYLIP version 3.696
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wno-unused-result   -c -o clique.o clique.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wno-unused-result   -c -o disc.o disc.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wno-unused-result   -c -o phylip.o phylip.c
x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native -fno-common -Wno-unused-result clique.o disc.o phylip.o -lm -o clique
/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: disc.o:(.bss+0x38): multiple definition of `firstplotblock'; clique.o:(.bss+0x628): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: disc.o:(.bss+0x39): multiple definition of `javarun'; clique.o:(.bss+0x629): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: phylip.o:(.bss+0x79): multiple definition of `javarun'; clique.o:(.bss+0x629): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: phylip.o:(.bss+0x78): multiple definition of `firstplotblock'; clique.o:(.bss+0x628): first defined here
collect2: error: ld returned 1 exit status
make: *** [Makefile:273: clique] Error 1
 * ERROR: sci-biology/phylip-3.696-r2::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-biology/phylip-3.696-r2::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-biology/phylip-3.696-r2::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-biology:phylip-3.696-r2:20200129-000011.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/phylip-3.696-r2/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-biology/phylip-3.696-r2/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-biology/phylip-3.696-r2/work/phylip-3.696/src'
 * S: '/var/tmp/portage/sci-biology/phylip-3.696-r2/work/phylip-3.696/src'