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Gentoo's Bugzilla – Attachment 598252 Details for
Bug 701780
sci-libs/dealii-9.1.1 : configuration error with cmake-3.16*
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sci-libs:dealii-9.1.1:20191202-012500.log
sci-libs:dealii-9.1.1:20191202-012500.log (text/plain), 30.50 KB, created by
Toralf Förster
on 2019-12-02 17:10:28 UTC
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hide
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Description:
sci-libs:dealii-9.1.1:20191202-012500.log
Filename:
MIME Type:
Creator:
Toralf Förster
Created:
2019-12-02 17:10:28 UTC
Size:
30.50 KB
patch
obsolete
> * Package: sci-libs/dealii-9.1.1 > * Repository: gentoo > * Maintainer: tamiko@gentoo.org sci@gentoo.org > * USE: abi_x86_64 amd64 cpu_flags_x86_avx cpu_flags_x86_sse2 debug elibc_glibc examples gsl kernel_linux lapack sparse tbb userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>>> Unpacking source... >>>> Unpacking dealii-9.1.1.tar.gz to /var/tmp/portage/sci-libs/dealii-9.1.1/work >>>> Source unpacked in /var/tmp/portage/sci-libs/dealii-9.1.1/work >>>> Preparing source in /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1 ... > * Applying dealii-9.1.1-no-ld-flags.patch ... >patching file cmake/config/config_debug.pc.in >patching file cmake/config/config_release.pc.in > [ ok ] >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1 ... >>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1_build" >cmake -C /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DDEAL_II_PACKAGE_VERSION=9999 -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=OFF -DDEAL_II_ALLOW_AUTODETECTION=OFF -DDEAL_II_ALLOW_BUNDLED=OFF -DDEAL_II_ALLOW_PLATFORM_INTROSPECTION=OFF -DDEAL_II_COMPILE_EXAMPLES=OFF -DDEAL_II_DOCHTML_RELDIR=share/doc/dealii-9.1.1/html -DDEAL_II_DOCREADME_RELDIR=share/doc/dealii-9.1.1 -DDEAL_II_COMPILE_EXAMPLES=OFF -DDEAL_II_EXAMPLES_RELDIR=share/doc/dealii-9.1.1/examples -DDEAL_II_LIBRARY_RELDIR=lib64 -DDEAL_II_SHARE_RELDIR=share/dealii -DDEAL_II_WITH_ZLIB=ON -DDEAL_II_WITH_ADOLC=no -DDEAL_II_WITH_ASSIMP=no -DDEAL_II_WITH_ARPACK=no -DDEAL_II_WITH_CUDA=no -DDEAL_II_COMPONENT_DOCUMENTATION=no -DDEAL_II_COMPONENT_EXAMPLES=yes -DDEAL_II_WITH_GMSH=no -DDEAL_II_WITH_GSL=yes -DDEAL_II_WITH_HDF5=no -DDEAL_II_WITH_LAPACK=yes -DDEAL_II_WITH_METIS=no -DDEAL_II_WITH_MPI=no -DDEAL_II_WITH_MUPARSER=no -DDEAL_II_WITH_NANOFLANN=no -DDEAL_II_WITH_NETCDF=no -DDEAL_II_WITH_OPENCASCADE=no -DDEAL_II_WITH_P4EST=no -DDEAL_II_WITH_PETSC=no -DDEAL_II_WITH_SCALAPACK=no -DDEAL_II_WITH_SLEPC=no -DDEAL_II_WITH_SUNDIALS=no -DDEAL_II_WITH_SYMENGINE=no -DDEAL_II_WITH_UMFPACK=yes -DBUILD_SHARED_LIBS=yes -DDEAL_II_PREFER_STATIC_LIBS=no -DDEAL_II_WITH_THREADS=yes -DDEAL_II_WITH_TRILINOS=no -DDEAL_II_HAVE_AVX=yes -DCMAKE_BUILD_TYPE=DebugRelease -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1_build/gentoo_toolchain.cmake /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1 >loading initial cache file /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1_build/gentoo_common_config.cmake >-- This is CMake 3.16.0 >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/setup_external_macros.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_add_flags.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_check_compiler_setup.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_check_cxx_compiler_bug.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_check_mpi_interface.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_clear_cmake_required.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_configure_feature.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_add_definitions.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_add_library.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_add_test.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_find_file.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_find_library.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_find_path.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_find_program.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_initialize_cached_variables.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_insource_setup_target.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_invoke_autopilot.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_package_handle.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_pickup_tests.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_query_git_information.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_setup_target.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_decorate_with_stars.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_enable_if_links.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_enable_if_supported.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_enable_language_optional.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_evaluate_expression.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_expand_instantiations.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_filter_system_libraries.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_find_package.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_find_system_library.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_item_matches.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_purge_feature.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_register_feature.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_remove_duplicates.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_replace_flag.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_reset_cmake_required.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_set_if_empty.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_setup_source_list.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_setup_unity_target.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_strip_flag.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_switch_library_preference.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_to_string.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_to_string_and_add_prefix.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_unset_if_changed.cmake >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_verbose_include.cmake >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/setup_cached_variables.cmake >-- Prepending ${CUDA_NVCC_FLAGS} to ${DEAL_II_CUDA_FLAGS} >-- The CXX compiler identification is GNU 9.2.0 >-- The C compiler identification is GNU 9.2.0 >-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ >-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works >-- Detecting CXX compiler ABI info >-- Detecting CXX compiler ABI info - done >-- Detecting CXX compile features >-- Detecting CXX compile features - done >-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc >-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works >-- Detecting C compiler ABI info >-- Detecting C compiler ABI info - done >-- Detecting C compile features >-- Detecting C compile features - done >-- The Fortran compiler identification is GNU 9.2.0 >-- Check for working Fortran compiler: /usr/bin/x86_64-pc-linux-gnu-gfortran >-- Check for working Fortran compiler: /usr/bin/x86_64-pc-linux-gnu-gfortran -- works >-- Detecting Fortran compiler ABI info >-- Detecting Fortran compiler ABI info - done >-- Checking whether /usr/bin/x86_64-pc-linux-gnu-gfortran supports Fortran 90 >-- Checking whether /usr/bin/x86_64-pc-linux-gnu-gfortran supports Fortran 90 -- yes >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/setup_deal_ii.cmake >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/setup_compiler_flags.cmake >-- Performing Test DEAL_II_HAVE_USABLE_USER_FLAGS_DEBUG >-- Performing Test DEAL_II_HAVE_USABLE_USER_FLAGS_DEBUG - Success >-- Performing Test DEAL_II_HAVE_USABLE_USER_FLAGS_RELEASE >-- Performing Test DEAL_II_HAVE_USABLE_USER_FLAGS_RELEASE - Success >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/setup_compiler_flags_gnu.cmake >-- Performing Test DEAL_II_HAVE_FLAG_pedantic >-- Performing Test DEAL_II_HAVE_FLAG_pedantic - Success >-- Performing Test DEAL_II_HAVE_FLAG_fPIC >-- Performing Test DEAL_II_HAVE_FLAG_fPIC - Success >-- Performing Test DEAL_II_HAVE_FLAG_Wl__as_needed >-- Performing Test DEAL_II_HAVE_FLAG_Wl__as_needed - Success >-- Performing Test DEAL_II_HAVE_FLAG_Wall >-- Performing Test DEAL_II_HAVE_FLAG_Wall - Success >-- Performing Test DEAL_II_HAVE_FLAG_Wextra >-- Performing Test DEAL_II_HAVE_FLAG_Wextra - Success >-- Performing Test DEAL_II_HAVE_FLAG_Woverloaded_virtual >-- Performing Test DEAL_II_HAVE_FLAG_Woverloaded_virtual - Success >-- Performing Test DEAL_II_HAVE_FLAG_Wpointer_arith >-- Performing Test DEAL_II_HAVE_FLAG_Wpointer_arith - Success >-- Performing Test DEAL_II_HAVE_FLAG_Wsign_compare >-- Performing Test DEAL_II_HAVE_FLAG_Wsign_compare - Success >-- Performing Test DEAL_II_HAVE_FLAG_Wsuggest_override >-- Performing Test DEAL_II_HAVE_FLAG_Wsuggest_override - Success >-- Performing Test DEAL_II_HAVE_FLAG_Wswitch >-- Performing Test DEAL_II_HAVE_FLAG_Wswitch - Success >-- Performing Test DEAL_II_HAVE_FLAG_Wsynth >-- Performing Test DEAL_II_HAVE_FLAG_Wsynth - Success >-- Performing Test DEAL_II_HAVE_FLAG_Wwrite_strings >-- Performing Test DEAL_II_HAVE_FLAG_Wwrite_strings - Success >-- Performing Test DEAL_II_HAVE_FLAG_Wplacement_new >-- Performing Test DEAL_II_HAVE_FLAG_Wplacement_new - Success >-- Performing Test DEAL_II_HAVE_FLAG_Wdeprecated_declarations >-- Performing Test DEAL_II_HAVE_FLAG_Wdeprecated_declarations - Success >-- Performing Test DEAL_II_HAVE_FLAG_Wliteral_suffix >-- Performing Test DEAL_II_HAVE_FLAG_Wliteral_suffix - Success >-- Performing Test DEAL_II_HAVE_FLAG_Wpsabi >-- Performing Test DEAL_II_HAVE_FLAG_Wpsabi - Success >-- Performing Test DEAL_II_HAVE_FLAG_Wclass_memaccess >-- Performing Test DEAL_II_HAVE_FLAG_Wclass_memaccess - Success >-- Performing Test DEAL_II_HAVE_FLAG_funroll_loops >-- Performing Test DEAL_II_HAVE_FLAG_funroll_loops - Success >-- Performing Test DEAL_II_HAVE_FLAG_funroll_all_loops >-- Performing Test DEAL_II_HAVE_FLAG_funroll_all_loops - Success >-- Performing Test DEAL_II_HAVE_FLAG_fstrict_aliasing >-- Performing Test DEAL_II_HAVE_FLAG_fstrict_aliasing - Success >-- Performing Test DEAL_II_HAVE_FLAG_Wunused_local_typedefs >-- Performing Test DEAL_II_HAVE_FLAG_Wunused_local_typedefs - Success >-- Performing Test DEAL_II_HAVE_FLAG_ggdb >-- Performing Test DEAL_II_HAVE_FLAG_ggdb - Success >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/bundled/setup_bundled.cmake >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/checks/check_01_cpu_features.cmake >-- Check if the system is big endian >-- Searching 16 bit integer >-- Looking for sys/types.h >-- Looking for sys/types.h - found >-- Looking for stdint.h >-- Looking for stdint.h - found >-- Looking for stddef.h >-- Looking for stddef.h - found >-- Check size of unsigned short >-- Check size of unsigned short - done >-- Using unsigned short >-- Check if the system is big endian - little endian >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/checks/check_01_cxx_features.cmake >-- Performing Test DEAL_II_HAVE_FLAG_stdcxx17 >-- Performing Test DEAL_II_HAVE_FLAG_stdcxx17 - Success >-- Using C++ version flag "-std=c++17" >-- Performing Test DEAL_II_HAVE_CXX17_ATTRIBUTES >-- Performing Test DEAL_II_HAVE_CXX17_ATTRIBUTES - Success >-- Performing Test DEAL_II_HAVE_CXX17_IF_CONSTEXPR >-- Performing Test DEAL_II_HAVE_CXX17_IF_CONSTEXPR - Success >-- Performing Test DEAL_II_NON_CONSTEXPR_LAMBDA >-- Performing Test DEAL_II_NON_CONSTEXPR_LAMBDA - Success >-- Performing Test DEAL_II_HAVE_CXX14_MAKE_UNIQUE >-- Performing Test DEAL_II_HAVE_CXX14_MAKE_UNIQUE - Success >-- Performing Test DEAL_II_HAVE_CXX14_CONSTEXPR_STDMAXMIN >-- Performing Test DEAL_II_HAVE_CXX14_CONSTEXPR_STDMAXMIN - Success >-- Performing Test DEAL_II_HAVE_CXX14_CLANGAUTODEBUG_BUG_OK >-- Performing Test DEAL_II_HAVE_CXX14_CLANGAUTODEBUG_BUG_OK - Success >-- Performing Test DEAL_II_HAVE_CXX11_FEATURES >-- Performing Test DEAL_II_HAVE_CXX11_FEATURES - Success >-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_LLVMBUG20084_OK >-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_LLVMBUG20084_OK - Success >-- Performing Test DEAL_II_HAVE_CXX11_MACOSXC99BUG_OK >-- Performing Test DEAL_II_HAVE_CXX11_MACOSXC99BUG_OK - Success >-- Performing Test DEAL_II_HAVE_CXX11_ICCNUMERICLIMITSBUG_OK >-- Performing Test DEAL_II_HAVE_CXX11_ICCNUMERICLIMITSBUG_OK - Success >-- Performing Test DEAL_II_HAVE_CXX11_ICCLIBSTDCPP47CXX11BUG_OK >-- Performing Test DEAL_II_HAVE_CXX11_ICCLIBSTDCPP47CXX11BUG_OK - Success >-- Performing Test DEAL_II_COMPILER_DEFAULTS_TO_CXX11_OR_NEWER >-- Performing Test DEAL_II_COMPILER_DEFAULTS_TO_CXX11_OR_NEWER - Success >-- DEAL_II_WITH_CXX14 successfully set up >-- DEAL_II_WITH_CXX17 successfully set up >-- Performing Test DEAL_II_HAVE_CXX17_ATTRIBUTE_FALLTHROUGH >-- Performing Test DEAL_II_HAVE_CXX17_ATTRIBUTE_FALLTHROUGH - Success >-- Performing Test DEAL_II_HAVE_ATTRIBUTE_FALLTHROUGH >-- Performing Test DEAL_II_HAVE_ATTRIBUTE_FALLTHROUGH - Success >-- Performing Test DEAL_II_HAVE_CXX11_IS_TRIVIALLY_COPYABLE >-- Performing Test DEAL_II_HAVE_CXX11_IS_TRIVIALLY_COPYABLE - Success >-- Performing Test DEAL_II_HAVE_FP_EXCEPTIONS >-- Performing Test DEAL_II_HAVE_FP_EXCEPTIONS - Success >-- Performing Test DEAL_II_HAVE_COMPLEX_OPERATOR_OVERLOADS >-- Performing Test DEAL_II_HAVE_COMPLEX_OPERATOR_OVERLOADS - Failed >-- Performing Test DEAL_II_HAVE_CXX14_CONSTEXPR_CAN_CALL_NONCONSTEXPR >-- Performing Test DEAL_II_HAVE_CXX14_CONSTEXPR_CAN_CALL_NONCONSTEXPR - Success >-- Performing Test DEAL_II_HAVE_CXX17_SPECIAL_MATH_FUNCTIONS >-- Performing Test DEAL_II_HAVE_CXX17_SPECIAL_MATH_FUNCTIONS - Success >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/checks/check_02_compiler_features.cmake >-- Performing Test DEAL_II_COMPILER_USE_VECTOR_ARITHMETICS >-- Performing Test DEAL_II_COMPILER_USE_VECTOR_ARITHMETICS - Success >-- Performing Test DEAL_II_VECTOR_ITERATOR_IS_POINTER_OK >-- Performing Test DEAL_II_VECTOR_ITERATOR_IS_POINTER_OK - Success >-- Test successful, do not define DEAL_II_VECTOR_ITERATOR_IS_POINTER >-- Performing Test DEAL_II_HAVE_BUILTIN_EXPECT >-- Performing Test DEAL_II_HAVE_BUILTIN_EXPECT - Success >-- Performing Test DEAL_II_HAVE_GLIBC_STACKTRACE >-- Performing Test DEAL_II_HAVE_GLIBC_STACKTRACE - Success >-- Performing Test DEAL_II_HAVE_FLAG_rdynamic >-- Performing Test DEAL_II_HAVE_FLAG_rdynamic - Success >-- Performing Test DEAL_II_HAVE_LIBSTDCXX_DEMANGLER >-- Performing Test DEAL_II_HAVE_LIBSTDCXX_DEMANGLER - Success >-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_PRETTY_FUNCTION >-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_PRETTY_FUNCTION - Success >-- Performing Test DEAL_II_HAVE_FLAG_Wa__compress_debug_sections >-- Performing Test DEAL_II_HAVE_FLAG_Wa__compress_debug_sections - Success >-- Performing Test DEAL_II_COMPILER_HAS_CXX14_ATTRIBUTE_DEPRECATED >-- Performing Test DEAL_II_COMPILER_HAS_CXX14_ATTRIBUTE_DEPRECATED - Success >-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_DEPRECATED >-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_DEPRECATED - Success >-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_ALWAYS_INLINE >-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_ALWAYS_INLINE - Success >-- Performing Test DEAL_II_COMPILER_HAS_RESTRICT_KEYWORD >-- Performing Test DEAL_II_COMPILER_HAS_RESTRICT_KEYWORD - Success >-- Performing Test DEAL_II_COMPILER_HAS_DIAGNOSTIC_PRAGMA >-- Performing Test DEAL_II_COMPILER_HAS_DIAGNOSTIC_PRAGMA - Success >-- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_LLD >-- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_LLD - Failed >-- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_GOLD >-- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_GOLD - Success >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/checks/check_02_system_features.cmake >-- Looking for C++ include sys/resource.h >CMake Warning (dev) at /usr/share/cmake/Modules/CheckIncludeFileCXX.cmake:79 (message): > Policy CMP0075 is not set: Include file check macros honor > CMAKE_REQUIRED_LIBRARIES. Run "cmake --help-policy CMP0075" for policy > details. Use the cmake_policy command to set the policy and suppress this > warning. > > CMAKE_REQUIRED_LIBRARIES is set to: > > -Wl,-O1 -Wl,--as-needed > > For compatibility with CMake 3.11 and below this check is ignoring it. >Call Stack (most recent call first): > cmake/checks/check_02_system_features.cmake:36 (CHECK_INCLUDE_FILE_CXX) > cmake/macros/macro_verbose_include.cmake:19 (INCLUDE) > CMakeLists.txt:115 (VERBOSE_INCLUDE) >This warning is for project developers. Use -Wno-dev to suppress it. > >-- Looking for C++ include sys/resource.h - found >-- Looking for C++ include unistd.h >-- Looking for C++ include unistd.h - found >-- Looking for gethostname >-- Looking for gethostname - found >-- Looking for getpid >-- Looking for getpid - found >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/checks/check_03_compiler_bugs.cmake >-- Performing Test DEAL_II_TEMPL_SPEC_FRIEND_BUG_OK >-- Performing Test DEAL_II_TEMPL_SPEC_FRIEND_BUG_OK - Success >-- Test successful, do not define DEAL_II_TEMPL_SPEC_FRIEND_BUG >-- Performing Test DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG_OK >-- Performing Test DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG_OK - Success >-- Test successful, do not define DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG >-- Performing Test DEAL_II_CONST_MEMBER_DEDUCTION_BUG_OK >-- Performing Test DEAL_II_CONST_MEMBER_DEDUCTION_BUG_OK - Success >-- Test successful, do not define DEAL_II_CONST_MEMBER_DEDUCTION_BUG >-- Performing Test DEAL_II_BIND_NO_CONST_OP_PARENTHESES_OK >-- Performing Test DEAL_II_BIND_NO_CONST_OP_PARENTHESES_OK - Success >-- Test successful, do not define DEAL_II_BIND_NO_CONST_OP_PARENTHESES >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_1_cuda.cmake >-- DEAL_II_WITH_CUDA is set to off. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_1_lapack.cmake >-- Found PkgConfig: x86_64-pc-linux-gnu-pkg-config (found version "1.6.3") >-- Checking for module 'blas' >-- Found blas, version 3.8.0 >-- Checking for module 'lapack' >-- Found lapack, version 3.8.0 >-- Found LAPACK: /usr/lib64/liblapack.so >-- Performing Test gfortran_LIBRARY >-- Performing Test gfortran_LIBRARY - Success >-- Performing Test m_LIBRARY >-- Performing Test m_LIBRARY - Success >-- Performing Test gcc_s_LIBRARY >-- Performing Test gcc_s_LIBRARY - Success >-- Performing Test gcc_LIBRARY >-- Performing Test gcc_LIBRARY - Success >-- Performing Test quadmath_LIBRARY >-- Performing Test quadmath_LIBRARY - Success >-- Performing Test c_LIBRARY >-- Performing Test c_LIBRARY - Success >-- LAPACK_LIBRARIES: /usr/lib64/liblapack.so;/usr/lib64/libblas.so;gfortran;m;gcc_s;gcc;quadmath;m;gcc_s;gcc;c;gcc_s;gcc >-- LAPACK_LINKER_FLAGS: >-- LAPACK_INCLUDE_DIRS: >-- LAPACK_USER_INCLUDE_DIRS: >-- Found LAPACK >-- Performing Test DEAL_II_HAVE_FLAG_pthread >-- Performing Test DEAL_II_HAVE_FLAG_pthread - Success >-- Performing Test LAPACK_SYMBOL_CHECK >-- Performing Test LAPACK_SYMBOL_CHECK - Success >-- Performing Test MKL_SYMBOL_CHECK >-- Performing Test MKL_SYMBOL_CHECK - Failed >-- Use other than Intel MKL implementation of BLAS/LAPACK (consult CMakeFiles/CMakeError.log for further information). >-- DEAL_II_WITH_LAPACK successfully set up with external dependencies. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_1_mpi.cmake >-- DEAL_II_WITH_MPI is set to off. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_1_threads.cmake >-- Found TBB_LIBRARY >-- TBB_DEBUG_LIBRARY not found! Call: >-- FIND_LIBRARY(TBB_DEBUG_LIBRARY NAMES tbb_debug HINTS PATH_SUFFIXES lib64 lib64 lib) >-- Found TBB_INCLUDE_DIR >-- TBB_VERSION: 9.0 >-- TBB_LIBRARIES: /usr/lib64/libtbb.so >-- TBB_INCLUDE_DIRS: /usr/include >-- TBB_USER_INCLUDE_DIRS: /usr/include >-- Found TBB >-- Looking for pthread.h >-- Looking for pthread.h - found >-- Performing Test CMAKE_HAVE_LIBC_PTHREAD >-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed >-- Looking for pthread_create in pthreads >-- Looking for pthread_create in pthreads - not found >-- Looking for pthread_create in pthread >-- Looking for pthread_create in pthread - found >-- Found Threads: TRUE >-- Performing Test DEAL_II_HAVE_MT_POSIX_BARRIERS >-- Performing Test DEAL_II_HAVE_MT_POSIX_BARRIERS - Failed >-- DEAL_II_WITH_THREADS successfully set up with external dependencies. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_1_zlib.cmake >-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.11") >-- ZLIB_VERSION: 1.2.11 >-- ZLIB_LIBRARIES: /usr/lib64/libz.so >-- ZLIB_INCLUDE_DIRS: /usr/include >-- Found ZLIB >-- DEAL_II_WITH_ZLIB successfully set up with external dependencies. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_2_boost.cmake >-- Found Boost: /usr/include (found suitable version "1.71.0", minimum required is "1.59") found components: iostreams serialization system thread regex chrono date_time atomic >-- BOOST_VERSION: 1.71.0 >-- BOOST_LIBRARIES: /usr/lib64/libboost_iostreams-mt.so;/usr/lib64/libboost_serialization-mt.so;/usr/lib64/libboost_system-mt.so;/usr/lib64/libboost_thread-mt.so;/usr/lib64/libboost_regex-mt.so;/usr/lib64/libboost_chrono-mt.so;/usr/lib64/libboost_date_time-mt.so;/usr/lib64/libboost_atomic-mt.so >-- BOOST_INCLUDE_DIRS: /usr/include >-- BOOST_USER_INCLUDE_DIRS: /usr/include >-- Found BOOST >-- Performing Test BOOST_IOSTREAMS_USABLE >-- Performing Test BOOST_IOSTREAMS_USABLE - Success >-- Performing Test DEAL_II_HAS_AUTO_PTR >-- Performing Test DEAL_II_HAS_AUTO_PTR - Failed >-- DEAL_II_WITH_BOOST successfully set up with external dependencies. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_2_ginkgo.cmake >-- DEAL_II_WITH_GINKGO is set to off. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_2_metis.cmake >-- DEAL_II_WITH_METIS is set to off. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_2_trilinos.cmake >-- DEAL_II_WITH_TRILINOS is set to off. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_2_umfpack.cmake >-- Found UMFPACK_INCLUDE_DIR >-- Found AMD_INCLUDE_DIR >-- Found SuiteSparse_config_INCLUDE_DIR >-- Found UMFPACK_LIBRARY >-- Found AMD_LIBRARY >-- Found CHOLMOD_LIBRARY >-- Found COLAMD_LIBRARY >-- CCOLAMD_LIBRARY not found! Call: >-- FIND_LIBRARY(CCOLAMD_LIBRARY NAMES ccolamd libccolamd HINTS /CCOLAMD /../CCOLAMD /CCOLAMD PATH_SUFFIXES lib64 lib64 lib Lib CCOLAMD/Lib) >-- CAMD_LIBRARY not found! Call: >-- FIND_LIBRARY(CAMD_LIBRARY NAMES camd libcamd HINTS /CAMD /../CAMD /CAMD PATH_SUFFIXES lib64 lib64 lib Lib CAMD/Lib) >-- Found SuiteSparse_config_LIBRARY >-- Performing Test rt_LIBRARY >-- Performing Test rt_LIBRARY - Success >-- UMFPACK_VERSION: 5.6.2 >-- UMFPACK_LIBRARIES: /usr/lib64/libumfpack.so;/usr/lib64/libcholmod.so;/usr/lib64/libcolamd.so;/usr/lib64/libsuitesparseconfig.so;/usr/lib64/libamd.so;/usr/lib64/liblapack.so;/usr/lib64/libblas.so;gfortran;quadmath;m;c;gcc_s;gcc;rt >-- UMFPACK_INCLUDE_DIRS: /usr/include;/usr/include;/usr/include >-- UMFPACK_USER_INCLUDE_DIRS: /usr/include;/usr/include;/usr/include >-- UMFPACK_LINKER_FLAGS: >-- Found UMFPACK >-- DEAL_II_WITH_UMFPACK successfully set up with external dependencies. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_3_petsc.cmake >-- DEAL_II_WITH_PETSC is set to off. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_adolc.cmake >-- DEAL_II_WITH_ADOLC is set to off. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_arpack.cmake >-- DEAL_II_WITH_ARPACK is set to off. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_assimp.cmake >-- DEAL_II_WITH_ASSIMP is set to off. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_complex_values.cmake >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_gmsh.cmake >-- DEAL_II_WITH_GMSH is set to off. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_gsl.cmake >-- Found GSL_LIBRARY >-- Found GSL_CBLAS_LIBRARY >-- Found GSL_INCLUDE_DIR >-- GSL_VERSION: 2.5 >-- GSL_LIBRARIES: /usr/lib64/libgsl.so;/usr/lib64/libgslcblas.so >-- GSL_INCLUDE_DIRS: /usr/include >-- GSL_USER_INCLUDE_DIRS: /usr/include >-- Found GSL >-- DEAL_II_WITH_GSL successfully set up with external dependencies. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_hdf5.cmake >-- DEAL_II_WITH_HDF5 is set to off. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_muparser.cmake >-- DEAL_II_WITH_MUPARSER is set to off. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_nanoflann.cmake >-- DEAL_II_WITH_NANOFLANN is set to off. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_netcdf.cmake >-- DEAL_II_WITH_NETCDF is set to off. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_opencascade.cmake >-- DEAL_II_WITH_OPENCASCADE is set to off. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_p4est.cmake >-- DEAL_II_WITH_P4EST is set to off. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_scalapack.cmake >-- DEAL_II_WITH_SCALAPACK is set to off. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_slepc.cmake >-- DEAL_II_WITH_SLEPC is set to off. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_sundials.cmake >-- DEAL_II_WITH_SUNDIALS is set to off. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_symengine.cmake >-- DEAL_II_WITH_SYMENGINE is set to off. >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/setup_cpack.cmake >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/setup_custom_targets.cmake >-- >-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/setup_finalize.cmake >-- Performing Test DEAL_II_HAVE_USABLE_FLAGS_DEBUG >-- Performing Test DEAL_II_HAVE_USABLE_FLAGS_DEBUG - Failed >-- Unable to compile a simple test program. Trying to drop "-fuse-ld=gold" from the linker flags. >-- Performing Test DEAL_II_HAVE_USABLE_FLAGS_DEBUG >-- Performing Test DEAL_II_HAVE_USABLE_FLAGS_DEBUG - Failed >CMake Error at cmake/setup_finalize.cmake:137 (MESSAGE): > > > Configuration error: Cannot compile a test program with the final set of > compiler and linker flags: > CXX flags (DEBUG): -pedantic -fPIC -Wall -Wextra -Woverloaded-virtual -Wpointer-arith -Wsign-compare -Wsuggest-override -Wswitch -Wsynth -Wwrite-strings -Wno-placement-new -Wno-deprecated-declarations -Wno-literal-suffix -Wno-psabi -Wno-class-memaccess -std=c++17 -O2 -pipe -march=native -Wno-unused-local-typedefs -O0 -ggdb -Wa,--compress-debug-sections > LD flags (DEBUG): -Wl,--as-needed -rdynamic -Wl,-O1 -Wl,--as-needed pthread -ggdb > LIBRARIES (DEBUG): /usr/lib64/libtbb.so;/usr/lib64/libz.so;/usr/lib64/libboost_iostreams-mt.so;/usr/lib64/libboost_serialization-mt.so;/usr/lib64/libboost_system-mt.so;/usr/lib64/libboost_thread-mt.so;/usr/lib64/libboost_regex-mt.so;/usr/lib64/libboost_chrono-mt.so;/usr/lib64/libboost_date_time-mt.so;/usr/lib64/libboost_atomic-mt.so;/usr/lib64/libumfpack.so;/usr/lib64/libcholmod.so;/usr/lib64/libcolamd.so;/usr/lib64/libsuitesparseconfig.so;/usr/lib64/libamd.so;/usr/lib64/liblapack.so;/usr/lib64/libblas.so;gfortran;quadmath;m;c;gcc_s;gcc;rt;/usr/lib64/libgsl.so;/usr/lib64/libgslcblas.so; > > > > >Call Stack (most recent call first): > cmake/macros/macro_verbose_include.cmake:19 (INCLUDE) > CMakeLists.txt:132 (VERBOSE_INCLUDE) > > >-- Configuring incomplete, errors occurred! >See also "/var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1_build/CMakeFiles/CMakeOutput.log". >See also "/var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1_build/CMakeFiles/CMakeError.log". > * ERROR: sci-libs/dealii-9.1.1::gentoo failed (configure phase): > * cmake failed > * > * Call stack: > * ebuild.sh, line 125: Called src_configure > * environment, line 2090: Called cmake-utils_src_configure > * environment, line 932: Called die > * The specific snippet of code: > * "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed"; > * > * If you need support, post the output of `emerge --info '=sci-libs/dealii-9.1.1::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-libs/dealii-9.1.1::gentoo'`. > * The complete build log is located at '/var/log/portage/sci-libs:dealii-9.1.1:20191202-012500.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-libs/dealii-9.1.1/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-libs/dealii-9.1.1/temp/environment'. > * Working directory: '/var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1_build' > * S: '/var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1'
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