sci-biology:maqview-0.2.5-r3:20190918-200534.log

sci-biology:maqview-0.2.5-r3:20190918-200534.log (text/plain), 6.37 KB, created by Toralf Förster on 2019-09-18 20:18:04 UTC

 * Package:    sci-biology/maqview-0.2.5-r3
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking maqview-0.2.5.tar.gz to /var/tmp/portage/sci-biology/maqview-0.2.5-r3/work
>>> Source unpacked in /var/tmp/portage/sci-biology/maqview-0.2.5-r3/work
>>> Preparing source in /var/tmp/portage/sci-biology/maqview-0.2.5-r3/work/maqview ...
 * Applying 0.2.5-ldflags.patch ...
 [ ok ]
 * Applying 0.2.5-zlib.patch ...
 [ ok ]
 * Applying maqview-0.2.5-gcc4.7.patch ...
 [ ok ]
 * Running eautoreconf in '/var/tmp/portage/sci-biology/maqview-0.2.5-r3/work/maqview' ...
 * Running aclocal ...
 [ ok ]
 * Running autoconf --force ...
 [ ok ]
 * Running autoheader ...
 [ ok ]
 * Running automake --add-missing --copy --force-missing ...
 [ ok ]
 * Running elibtoolize in: maqview/
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/maqview-0.2.5-r3/work/maqview ...
 * econf: updating maqview/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating maqview/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/maqview-0.2.5-r3 --htmldir=/usr/share/doc/maqview-0.2.5-r3/html --libdir=/usr/lib64
checking for a BSD-compatible install... /usr/lib/portage/python3.6/ebuild-helpers/xattr/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of x86_64-pc-linux-gnu-gcc... none
checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
checking dependency style of x86_64-pc-linux-gnu-g++... none
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking GL/glut.h usability... no
checking GL/glut.h presence... no
checking for GL/glut.h... no
checking for glutMouseWheelFunc in -lglut... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
config.status: executing depfiles commands
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/maqview-0.2.5-r3/work/maqview ...
make -j1 
make  all-am
make[1]: Entering directory '/var/tmp/portage/sci-biology/maqview-0.2.5-r3/work/maqview'
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I.   -DHAVE_FREEGLUT  -O2 -pipe -march=native -DMAQ_LONGREADS -c -o zrio_main.o zrio_main.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I.   -DHAVE_FREEGLUT  -O2 -pipe -march=native -DMAQ_LONGREADS -c -o btree.o btree.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I.   -DHAVE_FREEGLUT  -O2 -pipe -march=native -DMAQ_LONGREADS -c -o maqmap_index.o maqmap_index.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I.   -DHAVE_FREEGLUT  -O2 -pipe -march=native -DMAQ_LONGREADS -c -o zrio.o zrio.c
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I.   -DHAVE_FREEGLUT  -O2 -pipe -march=native -c -o stdhashc.o stdhashc.cc
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I.   -DHAVE_FREEGLUT  -O2 -pipe -march=native -DMAQ_LONGREADS -c -o cns_cache.o cns_cache.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I.   -DHAVE_FREEGLUT  -O2 -pipe -march=native -DMAQ_LONGREADS -c -o const.o const.c
x86_64-pc-linux-gnu-g++  -O2 -pipe -march=native  -Wl,-O1 -Wl,--as-needed -o zrio zrio_main.o btree.o maqmap_index.o zrio.o stdhashc.o cns_cache.o const.o -lz -lz
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I.   -DHAVE_FREEGLUT  -O2 -pipe -march=native -DMAQ_LONGREADS -c -o maqmap_index_main.o maqmap_index_main.c
x86_64-pc-linux-gnu-g++  -O2 -pipe -march=native  -Wl,-O1 -Wl,--as-needed -o maqindex maqmap_index_main.o btree.o maqmap_index.o zrio.o stdhashc.o cns_cache.o const.o  -lz
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I.   -DHAVE_FREEGLUT  -O2 -pipe -march=native -DMAQ_LONGREADS -c -o read_cache.o read_cache.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I.   -DHAVE_FREEGLUT  -O2 -pipe -march=native -DMAQ_LONGREADS -c -o view_goto.o view_goto.c
In file included from view_goto.c:4:
maqview.h:8:10: fatal error: GL/glut.h: No such file or directory
    8 | #include "GL/glut.h"
      |          ^~~~~~~~~~~
compilation terminated.
make[1]: *** [Makefile:479: view_goto.o] Error 1
make[1]: Leaving directory '/var/tmp/portage/sci-biology/maqview-0.2.5-r3/work/maqview'
make: *** [Makefile:336: all] Error 2
 * ERROR: sci-biology/maqview-0.2.5-r3::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-biology/maqview-0.2.5-r3::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-biology/maqview-0.2.5-r3::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-biology:maqview-0.2.5-r3:20190918-200534.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/maqview-0.2.5-r3/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-biology/maqview-0.2.5-r3/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-biology/maqview-0.2.5-r3/work/maqview'
 * S: '/var/tmp/portage/sci-biology/maqview-0.2.5-r3/work/maqview'