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Gentoo's Bugzilla – Attachment 59023 Details for
Bug 88110
HDF5 (sci-libs/hdf5) on AMD64 needs LAM MPI (sys-cluster/lam-mpi) compiled with -fPIC in order to have parallel support.
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/var/tmp/portage/hdf5-1.6.4/work/hdf5-1.6.4/config.log
config.log (text/plain), 28.46 KB, created by
Octavio Ruiz (Ta^3)
on 2005-05-16 09:14:25 UTC
(
hide
)
Description:
/var/tmp/portage/hdf5-1.6.4/work/hdf5-1.6.4/config.log
Filename:
MIME Type:
Creator:
Octavio Ruiz (Ta^3)
Created:
2005-05-16 09:14:25 UTC
Size:
28.46 KB
patch
obsolete
>This file contains any messages produced by compilers while >running configure, to aid debugging if configure makes a mistake. > >It was created by HDF5 configure 1.6.4, which was >generated by GNU Autoconf 2.59. Invocation command line was > > $ ./configure --disable-static --with-ssl --enable-parallel --enable-linux-lfs --with-gnu-ld --prefix=/usr --sysconfdir=/etc --infodir=/usr/share/info --mandir=/usr/share/man > >## --------- ## >## Platform. ## >## --------- ## > >hostname = avalancha >uname -m = x86_64 >uname -r = 2.6.11-gentoo-r8 >uname -s = Linux >uname -v = #1 Fri May 13 09:07:35 CDT 2005 > >/usr/bin/uname -p = AMD Athlon(tm) 64 Processor 3200+ >/bin/uname -X = unknown > >/bin/arch = x86_64 >/usr/bin/arch -k = unknown >/usr/convex/getsysinfo = unknown >hostinfo = unknown >/bin/machine = unknown >/usr/bin/oslevel = unknown >/bin/universe = unknown > >PATH: /usr/lib/ccache/bin >PATH: /sbin >PATH: /usr/sbin >PATH: /usr/lib/portage/bin >PATH: /bin >PATH: /usr/bin >PATH: /opt/bin >PATH: /usr/x86_64-pc-linux-gnu/gcc-bin/3.4.3-20050110 >PATH: /opt/blackdown-jdk-1.4.2.01/bin >PATH: /opt/blackdown-jdk-1.4.2.01/jre/bin > > >## ----------- ## >## Core tests. ## >## ----------- ## > >configure:1573: checking build system type >configure:1591: result: x86_64-unknown-linux-gnu >configure:1599: checking host system type >configure:1613: result: x86_64-unknown-linux-gnu >configure:1627: checking shell variables initial values >A=hdf5-1.6.4.tar.gz >AA=hdf5-1.6.4.tar.gz >ABI=amd64 >ACCEPT_KEYWORDS='amd64 ~amd64' >ACCEPT_LICENSE= >AUTOCLEAN=yes >BASH=/bin/sh >BASH_ARGC=([0]="9") >BASH_ARGV=([0]="--mandir=/usr/share/man" [1]="--infodir=/usr/share/info" [2]="--sysconfdir=/etc" [3]="--prefix=/usr" [4]="--with-gnu-ld" [5]="--enable-linux-lfs" [6]="--enable-parallel" [7]="--with-ssl" [8]="--disable-static") >BASH_ENV=/etc/spork/is/not/valid/profile.env >BASH_LINENO=([0]="0") >BASH_SOURCE=([0]="./configure") >BASH_VERSINFO=([0]="3" [1]="00" [2]="16" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") >BASH_VERSION='3.00.16(1)-release' >BROWSER=firefox >BUILDDIR=/var/tmp/portage/hdf5-1.6.4 >BUILD_PREFIX=/var/tmp/portage >CATEGORY=sci-libs >CBUILD=x86_64-pc-linux-gnu >CC=/usr/bin/mpicc >CCACHE_DIR=/var/tmp/ccache >CCACHE_SIZE=2G >CDEFINE_amd64=__x86_64__ >CDEFINE_default=__unix__ >CDEFINE_x86=__i386__ >CFLAGS='-O2 -march=athlon64 -fomit-frame-pointer -pipe' >CFLAGS_amd64=-m64 >CFLAGS_x86='-m32 -L/emul/linux/x86/lib -L/emul/linux/x86/usr/lib' >CHOST=x86_64-pc-linux-gnu >CHOST_amd64=x86_64-pc-linux-gnu >CHOST_default=x86_64-pc-linux-gnu >CHOST_x86=i686-pc-linux-gnu >CLASSPATH=. >CLEAN_DELAY=3 >CONFIG_PROTECT=/usr/lib/X11/xkb >CONFIG_PROTECT_MASK='/etc/gconf /etc/terminfo /etc/texmf/web2c' >CONFIG_SITE='/usr/share/config.site /usr/etc/config.site' >CVS_RSH=ssh >CXXFLAGS='-O2 -march=athlon64 -fomit-frame-pointer -pipe' >D=/var/tmp/portage/hdf5-1.6.4/image/ >DCCC_PATH=/usr/lib/distcc/bin >DEFAULT_ABI=amd64 >DEFAULT_LIBS= >DESTTREE=/usr >DIROPTIONS=-m0755 >DIRSTACK=() >DISPLAY=:0.0 >DISTCC_DIR=/var/tmp/.distcc >DISTCC_LOG= >DISTCC_VERBOSE=0 >DISTDIR=/usr/portage/distfiles >DOCDESTTREE= >DUALCASE=1 >EBUILD=/usr/portage/sci-libs/hdf5/hdf5-1.6.4.ebuild >EBUILD_PHASE=compile >ECHO=echo >ECHO_C= >ECHO_N=-n >ECHO_T= >ECLASS= >ECLASSDIR=/usr/portage/eclass >ECLASS_DEPTH=0 >EDITOR=/usr/bin/vim >ELIBC=glibc >EMERGE_FROM=ebuild >EMERGE_WARNING_DELAY=10 >EUID=250 >EXEDESTTREE= >EXEOPTIONS=-m0755 >FEATURES='autoconfig candy ccache collision-protect distlocks multilib-strict sandbox sfperms strict userpriv usersandbox' >FETCHCOMMAND='/usr/bin/wget -t 5 --passive-ftp -P ${DISTDIR} ${URI}' >FILESDIR=/usr/portage/sci-libs/hdf5/files >GCC_SPECS= >GDK_USE_XFT=1 >GENTOO_MIRRORS='http://distfiles.gentoo.org http://distro.ibiblio.org/pub/Linux/distributions/gentoo' >GROUPS=() >GRP_STAGE23_USE=' ipv6 pam tcpd readline nls ssl gpm perl python berkdb ncurses readline zlib -java' >G_BROKEN_FILENAMES=1 >HISTCONTROL=ignoredups >HISTFILESIZE=5000 >HISTSIZE=5000 >HOME=/var/tmp/portage/homedir >HOSTNAME=avalancha >HOSTTYPE=x86_64 >IFS=' >' >INFOPATH=/usr/share/info:/usr/share/binutils-data/x86_64-pc-linux-gnu/2.15.92.0.2/info:/usr/share/gcc-data/x86_64-pc-linux-gnu/3.4.3-20050110/info:/usr/share/info/emacs-21 >INHERITED='multilib eutils multilib eutils multilib eutils multilib eutils' >INSDESTTREE= >INSOPTIONS=-m0644 >JAVAC=/opt/blackdown-jdk-1.4.2.01/bin/javac >JAVA_HOME=/opt/blackdown-jdk-1.4.2.01 >JDK_HOME=/opt/blackdown-jdk-1.4.2.01 >KERNEL=linux >KV=2.6.11-gentoo-r8 >KVERS=. >LADSPA_PATH=/usr/lib64/ladspa >LANG=C >LANGUAGE=C >LC_ADDRESS=C >LC_ALL=C >LC_COLLATE=C >LC_CTYPE=C >LC_IDENTIFICATION=C >LC_MEASUREMENT=C >LC_MESSAGES=C >LC_MONETARY=C >LC_NAME=C >LC_NUMERIC=C >LC_PAPER=C >LC_TELEPHONE=C >LC_TIME=C >LDFLAGS_amd64='-m elf_x86_64' >LDFLAGS_x86='-m elf_i386 -L/emul/linux/x86/lib -L/emul/linux/x86/usr/lib' >LD_PRELOAD=libsandbox.so >LESS=-R >LESSOPEN='|lesspipe.sh %s' >LIBDIR_amd64=lib64 >LIBDIR_default=lib >LIBDIR_x86=lib32 >LIBOPTIONS=-m0644 >LINENO=1627 >LOGNAME=root >LOG_COUNTER=5070 >LOG_PF=hdf5-1.6.4 >LS_COLORS='no=00:fi=00:di=01;34:ln=01;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:ex=01;32:*.cmd=01;32:*.exe=01;32:*.com=01;32:*.btm=01;32:*.bat=01;32:*.sh=01;32:*.csh=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.gz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.mng=01;35:*.xcf=01;35:*.pcx=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.avi=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.mov=01;35:*.qt=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.fli=01;35:*.gl=01;35:*.dl=01;35:*.pdf=00;32:*.ps=00;32:*.txt=00;32:*.patch=00;32:*.diff=00;32:*.log=00;32:*.tex=00;32:*.doc=00;32:*.mp3=00;36:*.wav=00;36:*.mid=00;36:*.midi=00;36:*.au=00;36:*.ogg=00;36:*.flac=00;36:*.aac=00;36:' >MACHTYPE=x86_64-pc-linux-gnu >MAKEFLAGS= >MAKEOPTS=-j2 >MANPATH=/usr/local/share/man:/usr/share/man:/usr/share/binutils-data/x86_64-pc-linux-gnu/2.15.92.0.2/man:/usr/share/gcc-data/x86_64-pc-linux-gnu/3.4.3-20050110/man::/opt/blackdown-jdk-1.4.2.01/man >MFLAGS= >MOPREFIX=hdf5 >MOZILLA_NEWTYPE=tab >MULTILIB_ABIS='x86 amd64' >MULTILIB_STRICT_DENY='64-bit.*shared object' >MULTILIB_STRICT_DIRS='/lib /usr/lib /usr/kde/*/lib /usr/qt/*/lib /usr/X11R6/lib' >MULTILIB_STRICT_EXEMPT='(perl5|gcc|gcc-lib|eclipse-3)' >O=/usr/portage/sci-libs/hdf5 >OPENGL_PROFILE=nvidia >OPTERR=1 >OPTIND=1 >OSTYPE=linux-gnu >P=hdf5-1.6.4 >PACKAGE_BUGREPORT=hdfhelp@ncsa.uiuc.edu >PACKAGE_NAME=HDF5 >PACKAGE_STRING='HDF5 1.6.4' >PACKAGE_TARNAME=hdf5 >PACKAGE_VERSION=1.6.4 >PAGER=/usr/bin/less >PATH=/usr/lib/ccache/bin:/sbin:/usr/sbin:/usr/lib/portage/bin:/bin:/usr/bin:/opt/bin:/usr/x86_64-pc-linux-gnu/gcc-bin/3.4.3-20050110:/opt/blackdown-jdk-1.4.2.01/bin:/opt/blackdown-jdk-1.4.2.01/jre/bin >PATH_SEPARATOR=: >PF=hdf5-1.6.4 >PIPESTATUS=([0]="0") >PKGDIR=/usr/portage/packages >PKG_TMPDIR=/var/tmp/portage-pkg >PN=hdf5 >PORTAGE_ARCHLIST='alpha amd64 arm hppa ia64 m68k mips ppc ppc64 ppc-macos ppc-od s390 sh sparc x86 x86-fbsd x86-obsd x86-od' >PORTAGE_BASHRC=/etc/portage/bashrc >PORTAGE_BINHOST_CHUNKSIZE=3000 >PORTAGE_CALLER=emerge >PORTAGE_GID=250 >PORTAGE_MASTER_PID=20066 >PORTAGE_TMPDIR=/var/tmp >PORTDIR=/usr/portage >PORTDIR_OVERLAY=/usr/local/portage >PORT_LOGDIR=/var/log/portage >POSIXLY_CORRECT=y >PPID=20125 >PR=r0 >PRELINK_PATH= >PRELINK_PATH_MASK=/usr/lib/gstreamer-0.8 >PROFILE_PATHS='/usr/portage/profiles/base >/usr/portage/profiles/default-linux >/usr/portage/profiles/default-linux/amd64 >/usr/portage/profiles/default-linux/amd64/2005.0 >/etc/portage/profile >/etc/portage/profile' >PS1='$ ' >PS2='> ' >PS4='+ ' >PV=1.6.4 >PVR=1.6.4 >PWD=/var/tmp/portage/hdf5-1.6.4/work/hdf5-1.6.4 >PWORKDIR=/var/tmp/portage/hdf5-1.6.4/work >RESTRICT= >RESUMECOMMAND='/usr/bin/wget -c -t 5 --passive-ftp -P ${DISTDIR} ${URI}' >ROOT=/ >ROOTPATH=/opt/bin:/usr/x86_64-pc-linux-gnu/gcc-bin/3.4.3-20050110:/opt/blackdown-jdk-1.4.2.01/bin:/opt/blackdown-jdk-1.4.2.01/jre/bin >RPMDIR=/usr/portage/rpm >RSYNC_RETRIES=5 >RSYNC_TIMEOUT=180 >S=/var/tmp/portage/hdf5-1.6.4/work/hdf5-1.6.4 >SANDBOX_ACTIVE=armedandready >SANDBOX_BASHRC=/usr/share/sandbox/sandbox.bashrc >SANDBOX_DEBUG_LOG=/tmp/sandbox-debug-20124.log >SANDBOX_DENY=/etc/ld.so.preload >SANDBOX_DIR=/usr/bin/ >SANDBOX_LIB=libsandbox.so >SANDBOX_LOG=/tmp/sandbox-sci-libs_-_hdf5-1.6.4-20124.log >SANDBOX_ON=1 >SANDBOX_PREDICT=/var/tmp/portage/homedir/.:/usr/lib/python2.0/:/usr/lib/python2.1/:/usr/lib/python2.2/:/usr/lib/python2.3/:/usr/lib/python2.4/:/usr/lib/python2.5/:/usr/lib/python3.0/::/proc/self/maps:/dev/console:/usr/lib/portage/pym:/dev/random:/usr/lib64/python2.0/:/usr/lib64/python2.1/:/usr/lib64/python2.2/:/usr/lib64/python2.3/:/usr/lib64/python2.4/:/usr/lib64/python2.5/:/usr/lib64/python3.0/ >SANDBOX_READ=/:/dev/shm:/var/tmp:/var/tmp/ccache >SANDBOX_WRITE=/dev/zero:/dev/fd/:/dev/null:/dev/pts/:/dev/vc/:/dev/pty:/dev/tty:/dev/shm/ngpt:/var/log/scrollkeeper.log:/usr/tmp/conftest:/usr/lib/conftest:/usr/lib32/conftest:/usr/lib64/conftest:/usr/tmp/cf:/usr/lib/cf:/usr/lib32/cf:/usr/lib64/cf:/var/tmp/portage/homedir/.gconfd/lock:/var/tmp/portage/homedir/.bash_history:/var/tmp:/tmp:/var/tmp:/tmp/:/var/tmp/:/dev/shm:/var/tmp:/usr/lib64/conftest:/usr/lib64/cf:/var/tmp/ccache:/var/tmp/.distcc >SANE_CONFIG_DIR=/etc/sane.d >SGML_CATALOG_FILES=/etc/sgml/sgml-docbook.cat:/etc/sgml/openjade-1.3.2.cat:/etc/sgml/sgml-ent.cat:/etc/sgml/xml-simple-docbook-4.1.2.4.cat:/etc/sgml/sgml-docbook-3.0.cat:/etc/sgml/sgml-docbook-3.1.cat:/etc/sgml/sgml-docbook-4.0.cat:/etc/sgml/sgml-docbook-4.1.cat:/etc/sgml/sgml-lite.cat:/etc/sgml/dsssl-docbook-stylesheets.cat >SHELL=/bin/sh >SHELLOPTS=braceexpand:hashall:interactive-comments:posix >SHLVL=4 >SLOT=0 >SSH_ASKPASS=/usr/bin/gtk2-ssh-askpass >STARTDIR=/usr/portage/sci-libs/hdf5 >SYMLINK_LIB=yes >SYNC=rsync://callampa/portage >T=/var/tmp/portage/hdf5-1.6.4/temp >TERM=xterm >TERMCMD=terminal >TMP=/var/tmp/portage/hdf5-1.6.4/temp >TMPDIR=/var/tmp/portage/hdf5-1.6.4/temp >UID=250 >USE='amd64 GAPING_SECURITY_HOLE X Xaw3d aac acpi aim alsa bash-completion berkdb bitmap-fonts bzip2 cdparanoia cdr crypt cups curl dga directfb dvd dvdread emacs encode fam fbcon flac font-server fortran gdbm gif gimpprint gpgme gpm gstreamer gtk gtk2 hlapi icq imagemagick imap imlib ipv6 irc jabber java javascript jp2 jpeg justify leim libcaca libwww lzw lzw-tiff mad mikmod mng motif mozdevelop mozsvg mp3 mpeg mpi msn ncurses nls nptl nvidia offensive ogg oggvorbis opengl oss pam pcre perl png python readline real rtc samba scanner sdl ssl svg symlink tcpd tetex tiff truetype truetype-fonts type1-fonts unicode usb vorbis wmf xml2 xmms xpm xprint xrandr xv xvid yahoo zlib userland_GNU kernel_linux elibc_glibc' >USER=portage >USERLAND=GNU >USE_EXPAND='FRITZCAPI_CARDS FCDSL_CARDS VIDEO_CARDS INPUT_DEVICES LINGUAS USERLAND KERNEL ELIBC' >WORKDIR=/var/tmp/portage/hdf5-1.6.4/work >XARGS='xargs -r' >XAUTHORITY=/root/.xauthstYqKi >XINITRC=/etc/X11/xinit/xinitrc >_='checking shell variables initial values... ' >ac_arg='CFLAGS=-O2 -march=athlon64 -fomit-frame-pointer -pipe' >ac_aux_dir=bin >ac_cache_corrupted=false >ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' >ac_compiler_gnu= >ac_confdir=. >ac_config_commands=' default-1' >ac_config_guess='/bin/sh bin/config.guess' >ac_config_headers=' src/H5config.h' >ac_config_libobj_dir=. >ac_config_sub='/bin/sh bin/config.sub' >ac_configure='/bin/sh bin/configure' >ac_configure_args=''\''--disable-static'\'' '\''--with-ssl'\'' '\''--enable-parallel'\'' '\''--enable-linux-lfs'\'' '\''--with-gnu-ld'\'' '\''--prefix=/usr'\'' '\''--sysconfdir=/etc'\'' '\''--infodir=/usr/share/info'\'' '\''--mandir=/usr/share/man'\'' '\''CC=/usr/bin/mpicc'\'' '\''CFLAGS=-O2 -march=athlon64 -fomit-frame-pointer -pipe'\''' >ac_cpp='$CPP $CPPFLAGS' >ac_cv_build=x86_64-unknown-linux-gnu >ac_cv_build_alias=x86_64-unknown-linux-gnu >ac_cv_env_CC_set=set >ac_cv_env_CC_value=/usr/bin/mpicc >ac_cv_env_CFLAGS_set=set >ac_cv_env_CFLAGS_value='-O2 -march=athlon64 -fomit-frame-pointer -pipe' >ac_cv_env_CPPFLAGS_set= >ac_cv_env_CPPFLAGS_value= >ac_cv_env_CPP_set= >ac_cv_env_CPP_value= >ac_cv_env_LDFLAGS_set= >ac_cv_env_LDFLAGS_value= >ac_cv_env_build_alias_set= >ac_cv_env_build_alias_value= >ac_cv_env_host_alias_set= >ac_cv_env_host_alias_value= >ac_cv_env_target_alias_set= >ac_cv_env_target_alias_value= >ac_cv_host=x86_64-unknown-linux-gnu >ac_cv_host_alias=x86_64-unknown-linux-gnu >ac_default_prefix=/var/tmp/portage/hdf5-1.6.4/work/hdf5-1.6.4/hdf5 >ac_dir=bin >ac_env_CC_set=set >ac_env_CC_value=/usr/bin/mpicc >ac_env_CFLAGS_set=set >ac_env_CFLAGS_value='-O2 -march=athlon64 -fomit-frame-pointer -pipe' >ac_env_CPPFLAGS_set= >ac_env_CPPFLAGS_value= >ac_env_CPP_set= >ac_env_CPP_value= >ac_env_LDFLAGS_set= >ac_env_LDFLAGS_value= >ac_env_build_alias_set= >ac_env_build_alias_value= >ac_env_host_alias_set= >ac_env_host_alias_value= >ac_env_target_alias_set= >ac_env_target_alias_value= >ac_ext=c >ac_feature=linux_lfs >ac_hostname=avalancha >ac_includes_default='#include <stdio.h> >#if HAVE_SYS_TYPES_H ># include <sys/types.h> >#endif >#if HAVE_SYS_STAT_H ># include <sys/stat.h> >#endif >#if STDC_HEADERS ># include <stdlib.h> ># include <stddef.h> >#else ># if HAVE_STDLIB_H ># include <stdlib.h> ># endif >#endif >#if HAVE_STRING_H ># if !STDC_HEADERS && HAVE_MEMORY_H ># include <memory.h> ># endif ># include <string.h> >#endif >#if HAVE_STRINGS_H ># include <strings.h> >#endif >#if HAVE_INTTYPES_H ># include <inttypes.h> >#else ># if HAVE_STDINT_H ># include <stdint.h> ># endif >#endif >#if HAVE_UNISTD_H ># include <unistd.h> >#endif' >ac_init_help= >ac_init_version=false >ac_install_sh='bin/install-sh -c' >ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' >ac_max_here_lines=38 >ac_must_keep_next=false >ac_new_set= >ac_new_val= >ac_old_set= >ac_old_val= >ac_optarg=/usr/share/man >ac_option=--mandir=/usr/share/man >ac_package=gnu_ld >ac_pass=2 >ac_prev= >ac_sep=' ' >ac_signal=0 >ac_site_file=/usr/etc/config.site >ac_srcdir_defaulted=yes >ac_subdirs_all=' ' >ac_subst_files='DEPEND COMMENCE CONCLUDE' >ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS build build_cpu build_vendor build_os host host_cpu host_vendor host_os CPPFLAGS DEFAULT_LIBS HSIZET CC CFLAGS LDFLAGS ac_ct_CC EXEEXT OBJEXT config_dirs subdirs LT_STATIC_EXEC PERL AR SET_MAKE INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA LN_S ECHO RANLIB ac_ct_RANLIB STRIP ac_ct_STRIP CPP EGREP LIBTOOL USE_FILTER_DEFLATE USE_FILTER_SZIP SSL GASS TESTGASS SRB TESTSRB PDB2HDF PTHREAD DEBUG_PKG TRACE_API INSTRUMENT_LIBRARY PARALLEL RUNSERIAL RUNPARALLEL TESTPARALLEL MPE FILTERS USE_FILTER_SHUFFLE USE_FILTER_FLETCHER32 H5_VERSION CONFIG_DATE CONFIG_USER CONFIG_MODE BYTESEX STATIC_SHARED CC_VERSION ROOT DYNAMIC_DIRS HL SEARCH SETX LIBOBJS LTLIBOBJS' >ac_tool_prefix= >ac_unique_file=src/H5.c >ac_val=/usr/share/man >ac_var=target_alias >as_basename=basename >as_cr_LETTERS=ABCDEFGHIJKLMNOPQRSTUVWXYZ >as_cr_Letters=abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ >as_cr_alnum=abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789 >as_cr_digits=0123456789 >as_cr_letters=abcdefghijklmnopqrstuvwxyz >as_dir=/opt/blackdown-jdk-1.4.2.01/jre/bin >as_executable_p='test -f' >as_expr=expr >as_lineno_1=103 >as_lineno_2=104 >as_lineno_3=104 >as_ln_s='ln -s' >as_me=configure >as_mkdir_p=: >as_nl=' >' >as_save_IFS=' >' >as_tr_cpp='eval sed '\''y%*abcdefghijklmnopqrstuvwxyz%PABCDEFGHIJKLMNOPQRSTUVWXYZ%;s%[^_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789]%_%g'\''' >as_tr_sh='eval sed '\''y%*+%pp%;s%[^_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789]%_%g'\''' >as_unset=unset >as_var=LC_TIME >bindir='${exec_prefix}/bin' >build=x86_64-unknown-linux-gnu >build_cpu=x86_64 >build_os=linux-gnu >build_vendor=unknown >cache_file=/dev/null >cmd='sed 50q "$0"' >cross_compiling=no >datadir='${prefix}/share' >echo=echo >echo_test_string='#! /bin/sh ># From configure.in Id: configure.in. ># Guess values for system-dependent variables and create Makefiles. ># Generated by GNU Autoconf 2.59 for HDF5 1.6.4. ># ># Report bugs to <hdfhelp@ncsa.uiuc.edu>. ># ># Copyright (C) 2003 Free Software Foundation, Inc. ># This configure script is free software; the Free Software Foundation ># gives unlimited permission to copy, distribute and modify it. >## --------------------- ## >## M4sh Initialization. ## >## --------------------- ## > ># Be Bourne compatible >if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then > emulate sh > NULLCMD=: > # Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which > # is contrary to our usage. Disable this feature. > alias -g '\''${1+"$@"}'\''='\''"$@"'\'' >elif test -n "${BASH_VERSION+set}" && (set -o posix) >/dev/null 2>&1; then > set -o posix >fi >DUALCASE=1; export DUALCASE # for MKS sh > ># Support unset when possible. >if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then > as_unset=unset >else > as_unset=false >fi > > ># Work around bugs in pre-3.0 UWIN ksh. >$as_unset ENV MAIL MAILPATH >PS1='\''$ '\'' >PS2='\''> '\'' >PS4='\''+ '\'' > ># NLS nuisances. >for as_var in \ > LANG LANGUAGE LC_ADDRESS LC_ALL LC_COLLATE LC_CTYPE LC_IDENTIFICATION \ > LC_MEASUREMENT LC_MESSAGES LC_MONETARY LC_NAME LC_NUMERIC LC_PAPER \ > LC_TELEPHONE LC_TIME >do > if (set +x; test -z "`(eval $as_var=C; export $as_var) 2>&1`"); then > eval $as_var=C; export $as_var > else > $as_unset $as_var' >echo_testing_string='#! /bin/sh ># From configure.in Id: configure.in. ># Guess values for system-dependent variables and create Makefiles. ># Generated by GNU Autoconf 2.59 for HDF5 1.6.4. ># ># Report bugs to <hdfhelp@ncsa.uiuc.edu>. ># ># Copyright (C) 2003 Free Software Foundation, Inc. ># This configure script is free software; the Free Software Foundation ># gives unlimited permission to copy, distribute and modify it. >## --------------------- ## >## M4sh Initialization. ## >## --------------------- ## > ># Be Bourne compatible >if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then > emulate sh > NULLCMD=: > # Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which > # is contrary to our usage. Disable this feature. > alias -g '\''${1+"$@"}'\''='\''"$@"'\'' >elif test -n "${BASH_VERSION+set}" && (set -o posix) >/dev/null 2>&1; then > set -o posix >fi >DUALCASE=1; export DUALCASE # for MKS sh > ># Support unset when possible. >if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then > as_unset=unset >else > as_unset=false >fi > > ># Work around bugs in pre-3.0 UWIN ksh. >$as_unset ENV MAIL MAILPATH >PS1='\''$ '\'' >PS2='\''> '\'' >PS4='\''+ '\'' > ># NLS nuisances. >for as_var in \ > LANG LANGUAGE LC_ADDRESS LC_ALL LC_COLLATE LC_CTYPE LC_IDENTIFICATION \ > LC_MEASUREMENT LC_MESSAGES LC_MONETARY LC_NAME LC_NUMERIC LC_PAPER \ > LC_TELEPHONE LC_TIME >do > if (set +x; test -z "`(eval $as_var=C; export $as_var) 2>&1`"); then > eval $as_var=C; export $as_var > else > $as_unset $as_var' >enable_linux_lfs=yes >enable_parallel=yes >enable_static=no >exec_prefix=NONE >host=x86_64-unknown-linux-gnu >host_cpu=x86_64 >host_os=linux-gnu >host_vendor=unknown >includedir='${prefix}/include' >infodir=/usr/share/info >libdir='${exec_prefix}/lib' >libexecdir='${exec_prefix}/libexec' >localstatedir='${prefix}/var' >mandir=/usr/share/man >no_create= >no_recursion= >oldincludedir=/usr/include >prefix=/usr >program_prefix=NONE >program_suffix=NONE >program_transform_name=s,x,x, >sbindir='${exec_prefix}/sbin' >sharedstatedir='${prefix}/com' >silent= >site= >srcdir=. >subdirs= >sysconfdir=/etc >target= >verbose= >with_gnu_ld=yes >with_ssl=yes >x_includes=NONE >x_libraries=NONE >configure:1630: result: done >configure:1633: checking if tr works >configure:1641: result: yes >configure:1645: checking if basename works >configure:1653: result: yes >configure:1657: checking if xargs works >configure:1665: result: yes >configure:1669: checking for cached host >configure:1676: result: none >configure:1724: checking for sizeof hsize_t and hssize_t >configure:1735: result: large >configure:1758: checking for config x86_64-unknown-linux-gnu >configure:1766: result: no >configure:1758: checking for config x86_64-unknown-linux-gnu >configure:1766: result: no >configure:1758: checking for config unknown-linux-gnu >configure:1766: result: no >configure:1758: checking for config unknown-linux-gnu >configure:1766: result: no >configure:1758: checking for config x86_64-linux-gnu >configure:1766: result: no >configure:1758: checking for config x86_64-linux-gnu >configure:1766: result: no >configure:1758: checking for config x86_64-unknown >configure:1766: result: no >configure:1758: checking for config linux-gnu >configure:1762: result: found >configure:1777: checking for config ./config/site-specific/host-avalancha >configure:1785: result: no >configure:1838: checking for gcc >configure:1864: result: /usr/bin/mpicc >configure:2108: checking for C compiler version >configure:2111: /usr/bin/mpicc --version </dev/null >&5 >x86_64-pc-linux-gnu-gcc (GCC) 3.4.3-20050110 (Gentoo Linux 3.4.3.20050110-r2, ssp-3.4.3.20050110-0, pie-8.7.7) >Copyright (C) 2004 Free Software Foundation, Inc. >This is free software; see the source for copying conditions. There is NO >warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. > >configure:2114: $? = 0 >configure:2116: /usr/bin/mpicc -v </dev/null >&5 >Reading specs from /usr/lib/gcc/x86_64-pc-linux-gnu/3.4.3-20050110/specs >Configured with: /var/tmp/portage/gcc-3.4.3.20050110-r2/work/gcc-3.4.3/configure --enable-version-specific-runtime-libs --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/3.4.3-20050110 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/3.4.3-20050110/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/3.4.3-20050110 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/3.4.3-20050110/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/3.4.3-20050110/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/3.4.3-20050110/include/g++-v3 --host=x86_64-pc-linux-gnu --disable-altivec --enable-nls --without-included-gettext --with-system-zlib --disable-checking --disable-werror --disable-libunwind-exceptions --enable-multilib --disable-libgcj --enable-languages=c,c++,f77 --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu >Thread model: posix >gcc version 3.4.3-20050110 (Gentoo Linux 3.4.3.20050110-r2, ssp-3.4.3.20050110-0, pie-8.7.7) >configure:2119: $? = 0 >configure:2121: /usr/bin/mpicc -V </dev/null >&5 >x86_64-pc-linux-gnu-gcc: `-V' must come at the start of the command line >configure:2124: $? = 1 >configure:2147: checking for C compiler default output file name >configure:2150: /usr/bin/mpicc -O2 -march=athlon64 -fomit-frame-pointer -pipe -std=c99 -pedantic -Wall -Wextra -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Wsign-compare -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -Wno-long-long -Wfloat-equal -Wmissing-format-attribute -Wpadded -Wmissing-noreturn -Wpacked -Wdisabled-optimization -Wmultichar -Wendif-labels -Wdeclaration-after-statement -Wold-style-definition -Winvalid-pch conftest.c >&5 >conftest.c:13: warning: function declaration isn't a prototype >conftest.c: In function `main': >conftest.c:13: warning: old-style parameter declaration >/usr/lib64/liblammpio.so: undefined reference to `ADIOI_Malloc_request' >/usr/lib64/liblammpio.so: undefined reference to `ADIOI_Get_eof_offset' >/usr/lib64/liblammpio.so: undefined reference to `ADIOI_Ftable_max' >/usr/lib64/liblammpio.so: undefined reference to `ADIOI_Reqtable_ptr' >/usr/lib64/liblammpio.so: undefined reference to `ADIOI_Shfp_fname' >/usr/lib64/liblammpio.so: undefined reference to `ADIO_Init' >/usr/lib64/liblammpio.so: undefined reference to `ADIOI_DFLT_ERR_HANDLER' >/usr/lib64/liblammpio.so: undefined reference to `ADIO_Close' >/usr/lib64/liblammpio.so: undefined reference to `ADIO_Init_keyval' >/usr/lib64/liblammpio.so: undefined reference to `ADIO_Set_shared_fp' >/usr/lib64/liblammpio.so: undefined reference to `ADIOI_Set_lock' >/usr/lib64/liblammpio.so: undefined reference to `ADIOI_Reqtable' >/usr/lib64/liblammpio.so: undefined reference to `ADIOI_Free_fn' >/usr/lib64/liblammpio.so: undefined reference to `ADIOI_Get_position' >/usr/lib64/liblammpio.so: undefined reference to `ADIOI_Ftable_ptr' >/usr/lib64/liblammpio.so: undefined reference to `ADIO_Open' >/usr/lib64/liblammpio.so: undefined reference to `ADIOI_Reqtable_max' >/usr/lib64/liblammpio.so: undefined reference to `ADIOI_Realloc_fn' >/usr/lib64/liblammpio.so: undefined reference to `ADIOI_Get_byte_offset' >/usr/lib64/liblammpio.so: undefined reference to `ADIOI_Datatype_iscontig' >/usr/lib64/liblammpio.so: undefined reference to `ADIOI_End_call' >/usr/lib64/liblammpio.so: undefined reference to `ADIO_Get_shared_fp' >/usr/lib64/liblammpio.so: undefined reference to `ADIOI_Ftable' >/usr/lib64/liblammpio.so: undefined reference to `ADIO_ResolveFileType' >/usr/lib64/liblammpio.so: undefined reference to `ADIOI_Malloc_fn' >collect2: ld returned 1 exit status >configure:2153: $? = 1 >configure: failed program was: >| /* confdefs.h. */ >| >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.6.4" >| #define PACKAGE_STRING "HDF5 1.6.4" >| #define PACKAGE_BUGREPORT "hdfhelp@ncsa.uiuc.edu" >| #define HAVE_LARGE_HSIZET 1 >| /* end confdefs.h. */ >| >| int >| main () >| { >| >| ; >| return 0; >| } >configure:2192: error: C compiler cannot create executables >See `config.log' for more details. > >## ---------------- ## >## Cache variables. ## >## ---------------- ## > >ac_cv_build=x86_64-unknown-linux-gnu >ac_cv_build_alias=x86_64-unknown-linux-gnu >ac_cv_env_CC_set=set >ac_cv_env_CC_value=/usr/bin/mpicc >ac_cv_env_CFLAGS_set=set >ac_cv_env_CFLAGS_value='-O2 -march=athlon64 -fomit-frame-pointer -pipe' >ac_cv_env_CPPFLAGS_set= >ac_cv_env_CPPFLAGS_value= >ac_cv_env_CPP_set= >ac_cv_env_CPP_value= >ac_cv_env_LDFLAGS_set= >ac_cv_env_LDFLAGS_value= >ac_cv_env_build_alias_set= >ac_cv_env_build_alias_value= >ac_cv_env_host_alias_set= >ac_cv_env_host_alias_value= >ac_cv_env_target_alias_set= >ac_cv_env_target_alias_value= >ac_cv_host=x86_64-unknown-linux-gnu >ac_cv_host_alias=x86_64-unknown-linux-gnu >ac_cv_prog_ac_ct_CC=/usr/bin/mpicc >hdf5_cv_host=x86_64-unknown-linux-gnu > >## ----------------- ## >## Output variables. ## >## ----------------- ## > >AR='' >BYTESEX='' >CC='/usr/bin/mpicc' >CC_VERSION='' >CFLAGS='-O2 -march=athlon64 -fomit-frame-pointer -pipe -std=c99 -pedantic -Wall -Wextra -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Wsign-compare -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -Wno-long-long -Wfloat-equal -Wmissing-format-attribute -Wpadded -Wmissing-noreturn -Wpacked -Wdisabled-optimization -Wmultichar -Wendif-labels -Wdeclaration-after-statement -Wold-style-definition -Winvalid-pch' >CONFIG_DATE='' >CONFIG_MODE='' >CONFIG_USER='' >CPP='' >CPPFLAGS='' >DEBUG_PKG='' >DEFAULT_LIBS='' >DEFS='' >DYNAMIC_DIRS='' >ECHO='echo' >ECHO_C='' >ECHO_N='-n' >ECHO_T='' >EGREP='' >EXEEXT='' >FILTERS='' >GASS='' >H5_VERSION='' >HL='' >HSIZET='large' >INSTALL_DATA='' >INSTALL_PROGRAM='' >INSTALL_SCRIPT='' >INSTRUMENT_LIBRARY='' >LDFLAGS='' >LIBOBJS='' >LIBS='' >LIBTOOL='' >LN_S='' >LTLIBOBJS='' >LT_STATIC_EXEC='' >MPE='' >OBJEXT='' >PACKAGE_BUGREPORT='hdfhelp@ncsa.uiuc.edu' >PACKAGE_NAME='HDF5' >PACKAGE_STRING='HDF5 1.6.4' >PACKAGE_TARNAME='hdf5' >PACKAGE_VERSION='1.6.4' >PARALLEL='' >PATH_SEPARATOR=':' >PDB2HDF='' >PERL='' >PTHREAD='' >RANLIB='' >ROOT='/' >RUNPARALLEL='' >RUNSERIAL='' >SEARCH='' >SETX='' >SET_MAKE='' >SHELL='/bin/sh' >SRB='' >SSL='' >STATIC_SHARED='' >STRIP='' >TESTGASS='' >TESTPARALLEL='' >TESTSRB='' >TRACE_API='' >USE_FILTER_DEFLATE='' >USE_FILTER_FLETCHER32='' >USE_FILTER_SHUFFLE='' >USE_FILTER_SZIP='' >ac_ct_CC='/usr/bin/mpicc' >ac_ct_RANLIB='' >ac_ct_STRIP='' >bindir='${exec_prefix}/bin' >build='x86_64-unknown-linux-gnu' >build_alias='' >build_cpu='x86_64' >build_os='linux-gnu' >build_vendor='unknown' >config_dirs='' >datadir='${prefix}/share' >exec_prefix='NONE' >host='x86_64-unknown-linux-gnu' >host_alias='' >host_cpu='x86_64' >host_os='linux-gnu' >host_vendor='unknown' >includedir='${prefix}/include' >infodir='/usr/share/info' >libdir='${exec_prefix}/lib' >libexecdir='${exec_prefix}/libexec' >localstatedir='${prefix}/var' >mandir='/usr/share/man' >oldincludedir='/usr/include' >prefix='/usr' >program_transform_name='s,x,x,' >sbindir='${exec_prefix}/sbin' >sharedstatedir='${prefix}/com' >subdirs='' >sysconfdir='/etc' >target_alias='' > >## ------------- ## >## Output files. ## >## ------------- ## > >COMMENCE='' >CONCLUDE='' >DEPEND='' > >## ----------- ## >## confdefs.h. ## >## ----------- ## > >#define HAVE_LARGE_HSIZET 1 >#define PACKAGE_BUGREPORT "hdfhelp@ncsa.uiuc.edu" >#define PACKAGE_NAME "HDF5" >#define PACKAGE_STRING "HDF5 1.6.4" >#define PACKAGE_TARNAME "hdf5" >#define PACKAGE_VERSION "1.6.4" > >configure: exit 77
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