sci-libs:dealii-9.1.1:20190815-054217.log

sci-libs:dealii-9.1.1:20190815-054217.log (text/plain), 29.25 KB, created by Toralf Förster on 2019-08-15 17:18:26 UTC

 * Package:    sci-libs/dealii-9.1.1
 * Repository: gentoo
 * Maintainer: [e-mail] [e-mail]
 * USE:        abi_x86_64 amd64 cpu_flags_x86_avx cpu_flags_x86_sse2 debug elibc_glibc examples gsl hdf5 kernel_linux lapack netcdf sparse tbb userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking dealii-9.1.1.tar.gz to /var/tmp/portage/sci-libs/dealii-9.1.1/work
>>> Source unpacked in /var/tmp/portage/sci-libs/dealii-9.1.1/work
>>> Preparing source in /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1 ...
 * Applying dealii-9.1.1-no-ld-flags.patch ...
 [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1_build"
cmake -C /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DDEAL_II_PACKAGE_VERSION=9999 -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=OFF -DDEAL_II_ALLOW_AUTODETECTION=OFF -DDEAL_II_ALLOW_BUNDLED=OFF -DDEAL_II_ALLOW_PLATFORM_INTROSPECTION=OFF -DDEAL_II_COMPILE_EXAMPLES=OFF -DDEAL_II_DOCHTML_RELDIR=share/doc/dealii-9.1.1/html -DDEAL_II_DOCREADME_RELDIR=share/doc/dealii-9.1.1 -DDEAL_II_COMPILE_EXAMPLES=OFF -DDEAL_II_EXAMPLES_RELDIR=share/doc/dealii-9.1.1/examples -DDEAL_II_LIBRARY_RELDIR=lib64 -DDEAL_II_SHARE_RELDIR=share/dealii -DDEAL_II_WITH_ZLIB=ON -DDEAL_II_WITH_ADOLC=no -DDEAL_II_WITH_ASSIMP=no -DDEAL_II_WITH_ARPACK=no -DDEAL_II_WITH_CUDA=no -DDEAL_II_COMPONENT_DOCUMENTATION=no -DDEAL_II_COMPONENT_EXAMPLES=yes -DDEAL_II_WITH_GMSH=no -DDEAL_II_WITH_GSL=yes -DDEAL_II_WITH_HDF5=yes -DDEAL_II_WITH_LAPACK=yes -DDEAL_II_WITH_METIS=no -DDEAL_II_WITH_MPI=no -DDEAL_II_WITH_MUPARSER=no -DDEAL_II_WITH_NANOFLANN=no -DDEAL_II_WITH_NETCDF=yes -DDEAL_II_WITH_OPENCASCADE=no -DDEAL_II_WITH_P4EST=no -DDEAL_II_WITH_PETSC=no -DDEAL_II_WITH_SCALAPACK=no -DDEAL_II_WITH_SLEPC=no -DDEAL_II_WITH_SUNDIALS=no -DDEAL_II_WITH_SYMENGINE=no -DDEAL_II_WITH_UMFPACK=yes -DBUILD_SHARED_LIBS=yes -DDEAL_II_PREFER_STATIC_LIBS=no -DDEAL_II_WITH_THREADS=yes -DDEAL_II_WITH_TRILINOS=no -DDEAL_II_HAVE_AVX=yes -DCMAKE_BUILD_TYPE=DebugRelease -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1_build/gentoo_toolchain.cmake  /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1
loading initial cache file /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1_build/gentoo_common_config.cmake
CMake Warning (dev) at gentoo_common_config.cmake:9 (SET):
  implicitly converting 'BOOLEAN' to 'STRING' type.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- This is CMake 3.15.2
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/setup_external_macros.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_add_flags.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_check_compiler_setup.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_check_cxx_compiler_bug.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_check_mpi_interface.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_clear_cmake_required.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_configure_feature.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_add_definitions.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_add_library.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_add_test.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_find_file.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_find_library.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_find_path.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_find_program.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_initialize_cached_variables.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_insource_setup_target.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_invoke_autopilot.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_package_handle.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_pickup_tests.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_query_git_information.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_setup_target.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_decorate_with_stars.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_enable_if_links.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_enable_if_supported.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_enable_language_optional.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_evaluate_expression.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_expand_instantiations.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_filter_system_libraries.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_find_package.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_find_system_library.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_item_matches.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_purge_feature.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_register_feature.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_remove_duplicates.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_replace_flag.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_reset_cmake_required.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_set_if_empty.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_setup_source_list.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_setup_unity_target.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_strip_flag.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_switch_library_preference.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_to_string.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_to_string_and_add_prefix.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_unset_if_changed.cmake
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_verbose_include.cmake
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/setup_cached_variables.cmake
-- Prepending ${CUDA_NVCC_FLAGS} to ${DEAL_II_CUDA_FLAGS}
-- The CXX compiler identification is GNU 9.2.0
-- The C compiler identification is GNU 9.2.0
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- The Fortran compiler identification is GNU 9.2.0
-- Check for working Fortran compiler: /usr/bin/x86_64-pc-linux-gnu-gfortran
-- Check for working Fortran compiler: /usr/bin/x86_64-pc-linux-gnu-gfortran  -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/x86_64-pc-linux-gnu-gfortran supports Fortran 90
-- Checking whether /usr/bin/x86_64-pc-linux-gnu-gfortran supports Fortran 90 -- yes
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/setup_deal_ii.cmake
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/setup_compiler_flags.cmake
-- Performing Test DEAL_II_HAVE_USABLE_USER_FLAGS_DEBUG
-- Performing Test DEAL_II_HAVE_USABLE_USER_FLAGS_DEBUG - Success
-- Performing Test DEAL_II_HAVE_USABLE_USER_FLAGS_RELEASE
-- Performing Test DEAL_II_HAVE_USABLE_USER_FLAGS_RELEASE - Success
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/setup_compiler_flags_gnu.cmake
-- Performing Test DEAL_II_HAVE_FLAG_pedantic
-- Performing Test DEAL_II_HAVE_FLAG_pedantic - Success
-- Performing Test DEAL_II_HAVE_FLAG_fPIC
-- Performing Test DEAL_II_HAVE_FLAG_fPIC - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wl__as_needed
-- Performing Test DEAL_II_HAVE_FLAG_Wl__as_needed - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wall
-- Performing Test DEAL_II_HAVE_FLAG_Wall - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wextra
-- Performing Test DEAL_II_HAVE_FLAG_Wextra - Success
-- Performing Test DEAL_II_HAVE_FLAG_Woverloaded_virtual
-- Performing Test DEAL_II_HAVE_FLAG_Woverloaded_virtual - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wpointer_arith
-- Performing Test DEAL_II_HAVE_FLAG_Wpointer_arith - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wsign_compare
-- Performing Test DEAL_II_HAVE_FLAG_Wsign_compare - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wsuggest_override
-- Performing Test DEAL_II_HAVE_FLAG_Wsuggest_override - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wswitch
-- Performing Test DEAL_II_HAVE_FLAG_Wswitch - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wsynth
-- Performing Test DEAL_II_HAVE_FLAG_Wsynth - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wwrite_strings
-- Performing Test DEAL_II_HAVE_FLAG_Wwrite_strings - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wplacement_new
-- Performing Test DEAL_II_HAVE_FLAG_Wplacement_new - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wdeprecated_declarations
-- Performing Test DEAL_II_HAVE_FLAG_Wdeprecated_declarations - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wliteral_suffix
-- Performing Test DEAL_II_HAVE_FLAG_Wliteral_suffix - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wpsabi
-- Performing Test DEAL_II_HAVE_FLAG_Wpsabi - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wclass_memaccess
-- Performing Test DEAL_II_HAVE_FLAG_Wclass_memaccess - Success
-- Performing Test DEAL_II_HAVE_FLAG_funroll_loops
-- Performing Test DEAL_II_HAVE_FLAG_funroll_loops - Success
-- Performing Test DEAL_II_HAVE_FLAG_funroll_all_loops
-- Performing Test DEAL_II_HAVE_FLAG_funroll_all_loops - Success
-- Performing Test DEAL_II_HAVE_FLAG_fstrict_aliasing
-- Performing Test DEAL_II_HAVE_FLAG_fstrict_aliasing - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wunused_local_typedefs
-- Performing Test DEAL_II_HAVE_FLAG_Wunused_local_typedefs - Success
-- Performing Test DEAL_II_HAVE_FLAG_ggdb
-- Performing Test DEAL_II_HAVE_FLAG_ggdb - Success
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/bundled/setup_bundled.cmake
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/checks/check_01_cpu_features.cmake
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/checks/check_01_cxx_features.cmake
-- Performing Test DEAL_II_HAVE_FLAG_stdcxx17
-- Performing Test DEAL_II_HAVE_FLAG_stdcxx17 - Success
-- Using C++ version flag "-std=c++17"
-- Performing Test DEAL_II_HAVE_CXX17_ATTRIBUTES
-- Performing Test DEAL_II_HAVE_CXX17_ATTRIBUTES - Success
-- Performing Test DEAL_II_HAVE_CXX17_IF_CONSTEXPR
-- Performing Test DEAL_II_HAVE_CXX17_IF_CONSTEXPR - Success
-- Performing Test DEAL_II_NON_CONSTEXPR_LAMBDA
-- Performing Test DEAL_II_NON_CONSTEXPR_LAMBDA - Success
-- Performing Test DEAL_II_HAVE_CXX14_MAKE_UNIQUE
-- Performing Test DEAL_II_HAVE_CXX14_MAKE_UNIQUE - Success
-- Performing Test DEAL_II_HAVE_CXX14_CONSTEXPR_STDMAXMIN
-- Performing Test DEAL_II_HAVE_CXX14_CONSTEXPR_STDMAXMIN - Success
-- Performing Test DEAL_II_HAVE_CXX14_CLANGAUTODEBUG_BUG_OK
-- Performing Test DEAL_II_HAVE_CXX14_CLANGAUTODEBUG_BUG_OK - Success
-- Performing Test DEAL_II_HAVE_CXX11_FEATURES
-- Performing Test DEAL_II_HAVE_CXX11_FEATURES - Success
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_LLVMBUG20084_OK
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_LLVMBUG20084_OK - Success
-- Performing Test DEAL_II_HAVE_CXX11_MACOSXC99BUG_OK
-- Performing Test DEAL_II_HAVE_CXX11_MACOSXC99BUG_OK - Success
-- Performing Test DEAL_II_HAVE_CXX11_ICCNUMERICLIMITSBUG_OK
-- Performing Test DEAL_II_HAVE_CXX11_ICCNUMERICLIMITSBUG_OK - Success
-- Performing Test DEAL_II_HAVE_CXX11_ICCLIBSTDCPP47CXX11BUG_OK
-- Performing Test DEAL_II_HAVE_CXX11_ICCLIBSTDCPP47CXX11BUG_OK - Success
-- Performing Test DEAL_II_COMPILER_DEFAULTS_TO_CXX11_OR_NEWER
-- Performing Test DEAL_II_COMPILER_DEFAULTS_TO_CXX11_OR_NEWER - Success
-- DEAL_II_WITH_CXX14 successfully set up
-- DEAL_II_WITH_CXX17 successfully set up
-- Performing Test DEAL_II_HAVE_CXX17_ATTRIBUTE_FALLTHROUGH
-- Performing Test DEAL_II_HAVE_CXX17_ATTRIBUTE_FALLTHROUGH - Success
-- Performing Test DEAL_II_HAVE_ATTRIBUTE_FALLTHROUGH
-- Performing Test DEAL_II_HAVE_ATTRIBUTE_FALLTHROUGH - Success
-- Performing Test DEAL_II_HAVE_CXX11_IS_TRIVIALLY_COPYABLE
-- Performing Test DEAL_II_HAVE_CXX11_IS_TRIVIALLY_COPYABLE - Success
-- Performing Test DEAL_II_HAVE_FP_EXCEPTIONS
-- Performing Test DEAL_II_HAVE_FP_EXCEPTIONS - Success
-- Performing Test DEAL_II_HAVE_COMPLEX_OPERATOR_OVERLOADS
-- Performing Test DEAL_II_HAVE_COMPLEX_OPERATOR_OVERLOADS - Failed
-- Performing Test DEAL_II_HAVE_CXX14_CONSTEXPR_CAN_CALL_NONCONSTEXPR
-- Performing Test DEAL_II_HAVE_CXX14_CONSTEXPR_CAN_CALL_NONCONSTEXPR - Success
-- Performing Test DEAL_II_HAVE_CXX17_SPECIAL_MATH_FUNCTIONS
-- Performing Test DEAL_II_HAVE_CXX17_SPECIAL_MATH_FUNCTIONS - Success
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/checks/check_02_compiler_features.cmake
-- Performing Test DEAL_II_COMPILER_USE_VECTOR_ARITHMETICS
-- Performing Test DEAL_II_COMPILER_USE_VECTOR_ARITHMETICS - Success
-- Performing Test DEAL_II_VECTOR_ITERATOR_IS_POINTER_OK
-- Performing Test DEAL_II_VECTOR_ITERATOR_IS_POINTER_OK - Success
-- Test successful, do not define DEAL_II_VECTOR_ITERATOR_IS_POINTER
-- Performing Test DEAL_II_HAVE_BUILTIN_EXPECT
-- Performing Test DEAL_II_HAVE_BUILTIN_EXPECT - Success
-- Performing Test DEAL_II_HAVE_GLIBC_STACKTRACE
-- Performing Test DEAL_II_HAVE_GLIBC_STACKTRACE - Success
-- Performing Test DEAL_II_HAVE_FLAG_rdynamic
-- Performing Test DEAL_II_HAVE_FLAG_rdynamic - Success
-- Performing Test DEAL_II_HAVE_LIBSTDCXX_DEMANGLER
-- Performing Test DEAL_II_HAVE_LIBSTDCXX_DEMANGLER - Success
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_PRETTY_FUNCTION
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_PRETTY_FUNCTION - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wa__compress_debug_sections
-- Performing Test DEAL_II_HAVE_FLAG_Wa__compress_debug_sections - Success
-- Performing Test DEAL_II_COMPILER_HAS_CXX14_ATTRIBUTE_DEPRECATED
-- Performing Test DEAL_II_COMPILER_HAS_CXX14_ATTRIBUTE_DEPRECATED - Success
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_DEPRECATED
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_DEPRECATED - Success
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_ALWAYS_INLINE
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_ALWAYS_INLINE - Success
-- Performing Test DEAL_II_COMPILER_HAS_RESTRICT_KEYWORD
-- Performing Test DEAL_II_COMPILER_HAS_RESTRICT_KEYWORD - Success
-- Performing Test DEAL_II_COMPILER_HAS_DIAGNOSTIC_PRAGMA
-- Performing Test DEAL_II_COMPILER_HAS_DIAGNOSTIC_PRAGMA - Success
-- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_LLD
-- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_LLD - Failed
-- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_GOLD
-- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_GOLD - Success
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/checks/check_02_system_features.cmake
-- Looking for C++ include sys/resource.h
CMake Warning (dev) at /usr/share/cmake/Modules/CheckIncludeFileCXX.cmake:79 (message):
  Policy CMP0075 is not set: Include file check macros honor
  CMAKE_REQUIRED_LIBRARIES.  Run "cmake --help-policy CMP0075" for policy
  details.  Use the cmake_policy command to set the policy and suppress this
  warning.

  CMAKE_REQUIRED_LIBRARIES is set to:

    -Wl,-O1 -Wl,--as-needed

  For compatibility with CMake 3.11 and below this check is ignoring it.
Call Stack (most recent call first):
  cmake/checks/check_02_system_features.cmake:36 (CHECK_INCLUDE_FILE_CXX)
  cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
  CMakeLists.txt:115 (VERBOSE_INCLUDE)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Looking for C++ include sys/resource.h - found
-- Looking for C++ include unistd.h
-- Looking for C++ include unistd.h - found
-- Looking for gethostname
-- Looking for gethostname - found
-- Looking for getpid
-- Looking for getpid - found
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/checks/check_03_compiler_bugs.cmake
-- Performing Test DEAL_II_TEMPL_SPEC_FRIEND_BUG_OK
-- Performing Test DEAL_II_TEMPL_SPEC_FRIEND_BUG_OK - Success
-- Test successful, do not define DEAL_II_TEMPL_SPEC_FRIEND_BUG
-- Performing Test DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG_OK
-- Performing Test DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG_OK - Success
-- Test successful, do not define DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG
-- Performing Test DEAL_II_CONST_MEMBER_DEDUCTION_BUG_OK
-- Performing Test DEAL_II_CONST_MEMBER_DEDUCTION_BUG_OK - Success
-- Test successful, do not define DEAL_II_CONST_MEMBER_DEDUCTION_BUG
-- Performing Test DEAL_II_BIND_NO_CONST_OP_PARENTHESES_OK
-- Performing Test DEAL_II_BIND_NO_CONST_OP_PARENTHESES_OK - Success
-- Test successful, do not define DEAL_II_BIND_NO_CONST_OP_PARENTHESES
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_1_cuda.cmake
-- DEAL_II_WITH_CUDA is set to off.
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_1_lapack.cmake
-- Found PkgConfig: x86_64-pc-linux-gnu-pkg-config (found version "1.6.3") 
-- Checking for module 'blas'
--   Found blas, version 3.8.0
-- Checking for module 'lapack'
--   Found lapack, version 3.8.0
-- Found LAPACK: /usr/lib64/liblapack.so  
-- Performing Test gfortran_LIBRARY
-- Performing Test gfortran_LIBRARY - Success
-- Performing Test m_LIBRARY
-- Performing Test m_LIBRARY - Success
-- Performing Test gcc_s_LIBRARY
-- Performing Test gcc_s_LIBRARY - Success
-- Performing Test gcc_LIBRARY
-- Performing Test gcc_LIBRARY - Success
-- Performing Test quadmath_LIBRARY
-- Performing Test quadmath_LIBRARY - Success
-- Performing Test c_LIBRARY
-- Performing Test c_LIBRARY - Success
--   LAPACK_LIBRARIES: /usr/lib64/liblapack.so;/usr/lib64/libblas.so;gfortran;m;gcc_s;gcc;quadmath;m;gcc_s;gcc;c;gcc_s;gcc
--   LAPACK_LINKER_FLAGS: 
--   LAPACK_INCLUDE_DIRS: 
--   LAPACK_USER_INCLUDE_DIRS: 
-- Found LAPACK
-- Performing Test DEAL_II_HAVE_FLAG_pthread
-- Performing Test DEAL_II_HAVE_FLAG_pthread - Success
-- Performing Test LAPACK_SYMBOL_CHECK
-- Performing Test LAPACK_SYMBOL_CHECK - Success
-- Performing Test MKL_SYMBOL_CHECK
-- Performing Test MKL_SYMBOL_CHECK - Failed
-- Use other than Intel MKL implementation of BLAS/LAPACK (consult CMakeFiles/CMakeError.log for further information).
-- DEAL_II_WITH_LAPACK successfully set up with external dependencies.
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_1_mpi.cmake
-- DEAL_II_WITH_MPI is set to off.
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_1_threads.cmake
-- Found TBB_LIBRARY
-- TBB_DEBUG_LIBRARY not found! Call:
--     FIND_LIBRARY(TBB_DEBUG_LIBRARY NAMES tbb_debug HINTS PATH_SUFFIXES lib64 lib64 lib)
-- Found TBB_INCLUDE_DIR
--   TBB_VERSION: 8.0
--   TBB_LIBRARIES: /usr/lib64/libtbb.so
--   TBB_INCLUDE_DIRS: /usr/include
--   TBB_USER_INCLUDE_DIRS: /usr/include
-- Found TBB
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Performing Test DEAL_II_HAVE_MT_POSIX_BARRIERS
-- Performing Test DEAL_II_HAVE_MT_POSIX_BARRIERS - Success
-- DEAL_II_WITH_THREADS successfully set up with external dependencies.
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_1_zlib.cmake
-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.11") 
--   ZLIB_VERSION: 1.2.11
--   ZLIB_LIBRARIES: /usr/lib64/libz.so
--   ZLIB_INCLUDE_DIRS: /usr/include
-- Found ZLIB
-- DEAL_II_WITH_ZLIB successfully set up with external dependencies.
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_2_boost.cmake
-- Found Boost: /usr/include (found suitable version "1.70.0", minimum required is "1.59") found components:  iostreams serialization system thread regex chrono date_time atomic 
--   BOOST_VERSION: 1.70.0
--   BOOST_LIBRARIES: /usr/lib64/libboost_iostreams-mt.so;/usr/lib64/libboost_serialization-mt.so;/usr/lib64/libboost_system-mt.so;/usr/lib64/libboost_thread-mt.so;-pthread;/usr/lib64/libboost_regex-mt.so;/usr/lib64/libboost_chrono-mt.so;/usr/lib64/libboost_date_time-mt.so;/usr/lib64/libboost_atomic-mt.so
--   BOOST_INCLUDE_DIRS: /usr/include
--   BOOST_USER_INCLUDE_DIRS: /usr/include
-- Found BOOST
-- Performing Test BOOST_IOSTREAMS_USABLE
-- Performing Test BOOST_IOSTREAMS_USABLE - Success
-- Performing Test DEAL_II_HAS_AUTO_PTR
-- Performing Test DEAL_II_HAS_AUTO_PTR - Failed
-- DEAL_II_WITH_BOOST successfully set up with external dependencies.
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_2_ginkgo.cmake
-- DEAL_II_WITH_GINKGO is set to off.
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_2_metis.cmake
-- DEAL_II_WITH_METIS is set to off.
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_2_trilinos.cmake
-- DEAL_II_WITH_TRILINOS is set to off.
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_2_umfpack.cmake
-- Found UMFPACK_INCLUDE_DIR
-- Found AMD_INCLUDE_DIR
-- Found SuiteSparse_config_INCLUDE_DIR
-- Found UMFPACK_LIBRARY
-- Found AMD_LIBRARY
-- Found CHOLMOD_LIBRARY
-- Found COLAMD_LIBRARY
-- CCOLAMD_LIBRARY not found! Call:
--     FIND_LIBRARY(CCOLAMD_LIBRARY NAMES ccolamd libccolamd HINTS /CCOLAMD /../CCOLAMD /CCOLAMD PATH_SUFFIXES lib64 lib64 lib Lib CCOLAMD/Lib)
-- CAMD_LIBRARY not found! Call:
--     FIND_LIBRARY(CAMD_LIBRARY NAMES camd libcamd HINTS /CAMD /../CAMD /CAMD PATH_SUFFIXES lib64 lib64 lib Lib CAMD/Lib)
-- Found SuiteSparse_config_LIBRARY
-- Performing Test rt_LIBRARY
-- Performing Test rt_LIBRARY - Success
--   UMFPACK_VERSION: 5.6.2
--   UMFPACK_LIBRARIES: /usr/lib64/libumfpack.so;/usr/lib64/libcholmod.so;/usr/lib64/libcolamd.so;/usr/lib64/libsuitesparseconfig.so;/usr/lib64/libamd.so;/usr/lib64/liblapack.so;/usr/lib64/libblas.so;gfortran;quadmath;m;c;gcc_s;gcc;rt
--   UMFPACK_INCLUDE_DIRS: /usr/include;/usr/include;/usr/include
--   UMFPACK_USER_INCLUDE_DIRS: /usr/include;/usr/include;/usr/include
--   UMFPACK_LINKER_FLAGS: 
-- Found UMFPACK
-- DEAL_II_WITH_UMFPACK successfully set up with external dependencies.
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_3_petsc.cmake
-- DEAL_II_WITH_PETSC is set to off.
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_adolc.cmake
-- DEAL_II_WITH_ADOLC is set to off.
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_arpack.cmake
-- DEAL_II_WITH_ARPACK is set to off.
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_assimp.cmake
-- DEAL_II_WITH_ASSIMP is set to off.
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_complex_values.cmake
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_gmsh.cmake
-- DEAL_II_WITH_GMSH is set to off.
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_gsl.cmake
-- Found GSL_LIBRARY
-- Found GSL_CBLAS_LIBRARY
-- Found GSL_INCLUDE_DIR
--   GSL_VERSION: 2.5
--   GSL_LIBRARIES: /usr/lib64/libgsl.so;/usr/lib64/libgslcblas.so
--   GSL_INCLUDE_DIRS: /usr/include
--   GSL_USER_INCLUDE_DIRS: /usr/include
-- Found GSL
-- DEAL_II_WITH_GSL successfully set up with external dependencies.
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_hdf5.cmake
-- Found HDF5_INCLUDE_DIR
-- Found HDF5_LIBRARY
-- Found HDF5_HL_LIBRARY
-- Found HDF5_PUBCONF
--   HDF5_LIBRARIES: /usr/lib64/libhdf5_hl.so;/usr/lib64/libhdf5.so
--   HDF5_INCLUDE_DIRS: /usr/include
--   HDF5_USER_INCLUDE_DIRS: /usr/include
-- Found HDF5
-- DEAL_II_WITH_HDF5 successfully set up with external dependencies.
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_muparser.cmake
-- DEAL_II_WITH_MUPARSER is set to off.
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_nanoflann.cmake
-- DEAL_II_WITH_NANOFLANN is set to off.
-- 
-- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_netcdf.cmake
-- NETCDF_INCLUDE_DIR not found! Call:
--     FIND_PATH(NETCDF_INCLUDE_DIR netcdfcpp.h HINTS PATH_SUFFIXES netcdf include)
-- NETCDF_CPLUSPLUS_LIBRARY not found! Call:
--     FIND_LIBRARY(NETCDF_CPLUSPLUS_LIBRARY NAMES netcdf_c++ netcdf_cpp HINTS PATH_SUFFIXES lib64 lib64 lib)
-- Found NETCDF_C_LIBRARY
--   NETCDF_LIBRARIES: *** Required variable "NETCDF_CPLUSPLUS_LIBRARY" set to NOTFOUND ***
--   NETCDF_INCLUDE_DIRS: *** Required variable "NETCDF_INCLUDE_DIR" set to NOTFOUND ***
-- Could NOT find NETCDF
-- DEAL_II_WITH_NETCDF has unmet external dependencies.
CMake Error at cmake/macros/macro_configure_feature.cmake:112 (MESSAGE):
  

  Could not find the netcdf library!

  Please ensure that a suitable netcdf library is installed on your computer.

  If the library is not at a default location, either provide some hints for
  autodetection,

      $ NETCDF_DIR="..." cmake <...>
      $ cmake -DNETCDF_DIR="..." <...>

  or set the relevant variables by hand in ccmake.

Call Stack (most recent call first):
  cmake/macros/macro_configure_feature.cmake:269 (FEATURE_ERROR_MESSAGE)
  cmake/configure/configure_netcdf.cmake:20 (CONFIGURE_FEATURE)
  cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
  CMakeLists.txt:124 (VERBOSE_INCLUDE)


-- Configuring incomplete, errors occurred!
See also "/var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1_build/CMakeFiles/CMakeOutput.log".
See also "/var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1_build/CMakeFiles/CMakeError.log".
 * ERROR: sci-libs/dealii-9.1.1::gentoo failed (configure phase):
 *   cmake failed
 * 
 * Call stack:
 *     ebuild.sh, line  125:  Called src_configure
 *   environment, line 2106:  Called cmake-utils_src_configure
 *   environment, line  939:  Called die
 * The specific snippet of code:
 *       "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed";
 * 
 * If you need support, post the output of `emerge --info '=sci-libs/dealii-9.1.1::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-libs/dealii-9.1.1::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-libs:dealii-9.1.1:20190815-054217.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-libs/dealii-9.1.1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-libs/dealii-9.1.1/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1_build'
 * S: '/var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1'