* Package: sci-libs/dealii-9.1.1 * Repository: gentoo * Maintainer: tamiko@gentoo.org sci@gentoo.org * USE: abi_x86_64 amd64 cpu_flags_x86_avx cpu_flags_x86_sse2 debug elibc_glibc examples gsl hdf5 kernel_linux lapack netcdf sparse tbb userland_GNU * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>> Unpacking source... >>> Unpacking dealii-9.1.1.tar.gz to /var/tmp/portage/sci-libs/dealii-9.1.1/work >>> Source unpacked in /var/tmp/portage/sci-libs/dealii-9.1.1/work >>> Preparing source in /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1 ... * Applying dealii-9.1.1-no-ld-flags.patch ... [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1 ... >>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1_build" cmake -C /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DDEAL_II_PACKAGE_VERSION=9999 -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=OFF -DDEAL_II_ALLOW_AUTODETECTION=OFF -DDEAL_II_ALLOW_BUNDLED=OFF -DDEAL_II_ALLOW_PLATFORM_INTROSPECTION=OFF -DDEAL_II_COMPILE_EXAMPLES=OFF -DDEAL_II_DOCHTML_RELDIR=share/doc/dealii-9.1.1/html -DDEAL_II_DOCREADME_RELDIR=share/doc/dealii-9.1.1 -DDEAL_II_COMPILE_EXAMPLES=OFF -DDEAL_II_EXAMPLES_RELDIR=share/doc/dealii-9.1.1/examples -DDEAL_II_LIBRARY_RELDIR=lib64 -DDEAL_II_SHARE_RELDIR=share/dealii -DDEAL_II_WITH_ZLIB=ON -DDEAL_II_WITH_ADOLC=no -DDEAL_II_WITH_ASSIMP=no -DDEAL_II_WITH_ARPACK=no -DDEAL_II_WITH_CUDA=no -DDEAL_II_COMPONENT_DOCUMENTATION=no -DDEAL_II_COMPONENT_EXAMPLES=yes -DDEAL_II_WITH_GMSH=no -DDEAL_II_WITH_GSL=yes -DDEAL_II_WITH_HDF5=yes -DDEAL_II_WITH_LAPACK=yes -DDEAL_II_WITH_METIS=no -DDEAL_II_WITH_MPI=no -DDEAL_II_WITH_MUPARSER=no -DDEAL_II_WITH_NANOFLANN=no -DDEAL_II_WITH_NETCDF=yes -DDEAL_II_WITH_OPENCASCADE=no -DDEAL_II_WITH_P4EST=no -DDEAL_II_WITH_PETSC=no -DDEAL_II_WITH_SCALAPACK=no -DDEAL_II_WITH_SLEPC=no -DDEAL_II_WITH_SUNDIALS=no -DDEAL_II_WITH_SYMENGINE=no -DDEAL_II_WITH_UMFPACK=yes -DBUILD_SHARED_LIBS=yes -DDEAL_II_PREFER_STATIC_LIBS=no -DDEAL_II_WITH_THREADS=yes -DDEAL_II_WITH_TRILINOS=no -DDEAL_II_HAVE_AVX=yes -DCMAKE_BUILD_TYPE=DebugRelease -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1_build/gentoo_toolchain.cmake /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1 loading initial cache file /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1_build/gentoo_common_config.cmake CMake Warning (dev) at gentoo_common_config.cmake:9 (SET): implicitly converting 'BOOLEAN' to 'STRING' type. This warning is for project developers. Use -Wno-dev to suppress it. -- This is CMake 3.15.2 -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/setup_external_macros.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_add_flags.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_check_compiler_setup.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_check_cxx_compiler_bug.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_check_mpi_interface.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_clear_cmake_required.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_configure_feature.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_add_definitions.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_add_library.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_add_test.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_find_file.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_find_library.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_find_path.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_find_program.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_initialize_cached_variables.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_insource_setup_target.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_invoke_autopilot.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_package_handle.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_pickup_tests.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_query_git_information.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_deal_ii_setup_target.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_decorate_with_stars.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_enable_if_links.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_enable_if_supported.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_enable_language_optional.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_evaluate_expression.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_expand_instantiations.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_filter_system_libraries.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_find_package.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_find_system_library.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_item_matches.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_purge_feature.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_register_feature.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_remove_duplicates.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_replace_flag.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_reset_cmake_required.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_set_if_empty.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_setup_source_list.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_setup_unity_target.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_strip_flag.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_switch_library_preference.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_to_string.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_to_string_and_add_prefix.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_unset_if_changed.cmake -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/macros/macro_verbose_include.cmake -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/setup_cached_variables.cmake -- Prepending ${CUDA_NVCC_FLAGS} to ${DEAL_II_CUDA_FLAGS} -- The CXX compiler identification is GNU 9.2.0 -- The C compiler identification is GNU 9.2.0 -- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- The Fortran compiler identification is GNU 9.2.0 -- Check for working Fortran compiler: /usr/bin/x86_64-pc-linux-gnu-gfortran -- Check for working Fortran compiler: /usr/bin/x86_64-pc-linux-gnu-gfortran -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/bin/x86_64-pc-linux-gnu-gfortran supports Fortran 90 -- Checking whether /usr/bin/x86_64-pc-linux-gnu-gfortran supports Fortran 90 -- yes -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/setup_deal_ii.cmake -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/setup_compiler_flags.cmake -- Performing Test DEAL_II_HAVE_USABLE_USER_FLAGS_DEBUG -- Performing Test DEAL_II_HAVE_USABLE_USER_FLAGS_DEBUG - Success -- Performing Test DEAL_II_HAVE_USABLE_USER_FLAGS_RELEASE -- Performing Test DEAL_II_HAVE_USABLE_USER_FLAGS_RELEASE - Success -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/setup_compiler_flags_gnu.cmake -- Performing Test DEAL_II_HAVE_FLAG_pedantic -- Performing Test DEAL_II_HAVE_FLAG_pedantic - Success -- Performing Test DEAL_II_HAVE_FLAG_fPIC -- Performing Test DEAL_II_HAVE_FLAG_fPIC - Success -- Performing Test DEAL_II_HAVE_FLAG_Wl__as_needed -- Performing Test DEAL_II_HAVE_FLAG_Wl__as_needed - Success -- Performing Test DEAL_II_HAVE_FLAG_Wall -- Performing Test DEAL_II_HAVE_FLAG_Wall - Success -- Performing Test DEAL_II_HAVE_FLAG_Wextra -- Performing Test DEAL_II_HAVE_FLAG_Wextra - Success -- Performing Test DEAL_II_HAVE_FLAG_Woverloaded_virtual -- Performing Test DEAL_II_HAVE_FLAG_Woverloaded_virtual - Success -- Performing Test DEAL_II_HAVE_FLAG_Wpointer_arith -- Performing Test DEAL_II_HAVE_FLAG_Wpointer_arith - Success -- Performing Test DEAL_II_HAVE_FLAG_Wsign_compare -- Performing Test DEAL_II_HAVE_FLAG_Wsign_compare - Success -- Performing Test DEAL_II_HAVE_FLAG_Wsuggest_override -- Performing Test DEAL_II_HAVE_FLAG_Wsuggest_override - Success -- Performing Test DEAL_II_HAVE_FLAG_Wswitch -- Performing Test DEAL_II_HAVE_FLAG_Wswitch - Success -- Performing Test DEAL_II_HAVE_FLAG_Wsynth -- Performing Test DEAL_II_HAVE_FLAG_Wsynth - Success -- Performing Test DEAL_II_HAVE_FLAG_Wwrite_strings -- Performing Test DEAL_II_HAVE_FLAG_Wwrite_strings - Success -- Performing Test DEAL_II_HAVE_FLAG_Wplacement_new -- Performing Test DEAL_II_HAVE_FLAG_Wplacement_new - Success -- Performing Test DEAL_II_HAVE_FLAG_Wdeprecated_declarations -- Performing Test DEAL_II_HAVE_FLAG_Wdeprecated_declarations - Success -- Performing Test DEAL_II_HAVE_FLAG_Wliteral_suffix -- Performing Test DEAL_II_HAVE_FLAG_Wliteral_suffix - Success -- Performing Test DEAL_II_HAVE_FLAG_Wpsabi -- Performing Test DEAL_II_HAVE_FLAG_Wpsabi - Success -- Performing Test DEAL_II_HAVE_FLAG_Wclass_memaccess -- Performing Test DEAL_II_HAVE_FLAG_Wclass_memaccess - Success -- Performing Test DEAL_II_HAVE_FLAG_funroll_loops -- Performing Test DEAL_II_HAVE_FLAG_funroll_loops - Success -- Performing Test DEAL_II_HAVE_FLAG_funroll_all_loops -- Performing Test DEAL_II_HAVE_FLAG_funroll_all_loops - Success -- Performing Test DEAL_II_HAVE_FLAG_fstrict_aliasing -- Performing Test DEAL_II_HAVE_FLAG_fstrict_aliasing - Success -- Performing Test DEAL_II_HAVE_FLAG_Wunused_local_typedefs -- Performing Test DEAL_II_HAVE_FLAG_Wunused_local_typedefs - Success -- Performing Test DEAL_II_HAVE_FLAG_ggdb -- Performing Test DEAL_II_HAVE_FLAG_ggdb - Success -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/bundled/setup_bundled.cmake -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/checks/check_01_cpu_features.cmake -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/checks/check_01_cxx_features.cmake -- Performing Test DEAL_II_HAVE_FLAG_stdcxx17 -- Performing Test DEAL_II_HAVE_FLAG_stdcxx17 - Success -- Using C++ version flag "-std=c++17" -- Performing Test DEAL_II_HAVE_CXX17_ATTRIBUTES -- Performing Test DEAL_II_HAVE_CXX17_ATTRIBUTES - Success -- Performing Test DEAL_II_HAVE_CXX17_IF_CONSTEXPR -- Performing Test DEAL_II_HAVE_CXX17_IF_CONSTEXPR - Success -- Performing Test DEAL_II_NON_CONSTEXPR_LAMBDA -- Performing Test DEAL_II_NON_CONSTEXPR_LAMBDA - Success -- Performing Test DEAL_II_HAVE_CXX14_MAKE_UNIQUE -- Performing Test DEAL_II_HAVE_CXX14_MAKE_UNIQUE - Success -- Performing Test DEAL_II_HAVE_CXX14_CONSTEXPR_STDMAXMIN -- Performing Test DEAL_II_HAVE_CXX14_CONSTEXPR_STDMAXMIN - Success -- Performing Test DEAL_II_HAVE_CXX14_CLANGAUTODEBUG_BUG_OK -- Performing Test DEAL_II_HAVE_CXX14_CLANGAUTODEBUG_BUG_OK - Success -- Performing Test DEAL_II_HAVE_CXX11_FEATURES -- Performing Test DEAL_II_HAVE_CXX11_FEATURES - Success -- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_LLVMBUG20084_OK -- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_LLVMBUG20084_OK - Success -- Performing Test DEAL_II_HAVE_CXX11_MACOSXC99BUG_OK -- Performing Test DEAL_II_HAVE_CXX11_MACOSXC99BUG_OK - Success -- Performing Test DEAL_II_HAVE_CXX11_ICCNUMERICLIMITSBUG_OK -- Performing Test DEAL_II_HAVE_CXX11_ICCNUMERICLIMITSBUG_OK - Success -- Performing Test DEAL_II_HAVE_CXX11_ICCLIBSTDCPP47CXX11BUG_OK -- Performing Test DEAL_II_HAVE_CXX11_ICCLIBSTDCPP47CXX11BUG_OK - Success -- Performing Test DEAL_II_COMPILER_DEFAULTS_TO_CXX11_OR_NEWER -- Performing Test DEAL_II_COMPILER_DEFAULTS_TO_CXX11_OR_NEWER - Success -- DEAL_II_WITH_CXX14 successfully set up -- DEAL_II_WITH_CXX17 successfully set up -- Performing Test DEAL_II_HAVE_CXX17_ATTRIBUTE_FALLTHROUGH -- Performing Test DEAL_II_HAVE_CXX17_ATTRIBUTE_FALLTHROUGH - Success -- Performing Test DEAL_II_HAVE_ATTRIBUTE_FALLTHROUGH -- Performing Test DEAL_II_HAVE_ATTRIBUTE_FALLTHROUGH - Success -- Performing Test DEAL_II_HAVE_CXX11_IS_TRIVIALLY_COPYABLE -- Performing Test DEAL_II_HAVE_CXX11_IS_TRIVIALLY_COPYABLE - Success -- Performing Test DEAL_II_HAVE_FP_EXCEPTIONS -- Performing Test DEAL_II_HAVE_FP_EXCEPTIONS - Success -- Performing Test DEAL_II_HAVE_COMPLEX_OPERATOR_OVERLOADS -- Performing Test DEAL_II_HAVE_COMPLEX_OPERATOR_OVERLOADS - Failed -- Performing Test DEAL_II_HAVE_CXX14_CONSTEXPR_CAN_CALL_NONCONSTEXPR -- Performing Test DEAL_II_HAVE_CXX14_CONSTEXPR_CAN_CALL_NONCONSTEXPR - Success -- Performing Test DEAL_II_HAVE_CXX17_SPECIAL_MATH_FUNCTIONS -- Performing Test DEAL_II_HAVE_CXX17_SPECIAL_MATH_FUNCTIONS - Success -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/checks/check_02_compiler_features.cmake -- Performing Test DEAL_II_COMPILER_USE_VECTOR_ARITHMETICS -- Performing Test DEAL_II_COMPILER_USE_VECTOR_ARITHMETICS - Success -- Performing Test DEAL_II_VECTOR_ITERATOR_IS_POINTER_OK -- Performing Test DEAL_II_VECTOR_ITERATOR_IS_POINTER_OK - Success -- Test successful, do not define DEAL_II_VECTOR_ITERATOR_IS_POINTER -- Performing Test DEAL_II_HAVE_BUILTIN_EXPECT -- Performing Test DEAL_II_HAVE_BUILTIN_EXPECT - Success -- Performing Test DEAL_II_HAVE_GLIBC_STACKTRACE -- Performing Test DEAL_II_HAVE_GLIBC_STACKTRACE - Success -- Performing Test DEAL_II_HAVE_FLAG_rdynamic -- Performing Test DEAL_II_HAVE_FLAG_rdynamic - Success -- Performing Test DEAL_II_HAVE_LIBSTDCXX_DEMANGLER -- Performing Test DEAL_II_HAVE_LIBSTDCXX_DEMANGLER - Success -- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_PRETTY_FUNCTION -- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_PRETTY_FUNCTION - Success -- Performing Test DEAL_II_HAVE_FLAG_Wa__compress_debug_sections -- Performing Test DEAL_II_HAVE_FLAG_Wa__compress_debug_sections - Success -- Performing Test DEAL_II_COMPILER_HAS_CXX14_ATTRIBUTE_DEPRECATED -- Performing Test DEAL_II_COMPILER_HAS_CXX14_ATTRIBUTE_DEPRECATED - Success -- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_DEPRECATED -- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_DEPRECATED - Success -- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_ALWAYS_INLINE -- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_ALWAYS_INLINE - Success -- Performing Test DEAL_II_COMPILER_HAS_RESTRICT_KEYWORD -- Performing Test DEAL_II_COMPILER_HAS_RESTRICT_KEYWORD - Success -- Performing Test DEAL_II_COMPILER_HAS_DIAGNOSTIC_PRAGMA -- Performing Test DEAL_II_COMPILER_HAS_DIAGNOSTIC_PRAGMA - Success -- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_LLD -- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_LLD - Failed -- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_GOLD -- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_GOLD - Success -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/checks/check_02_system_features.cmake -- Looking for C++ include sys/resource.h CMake Warning (dev) at /usr/share/cmake/Modules/CheckIncludeFileCXX.cmake:79 (message): Policy CMP0075 is not set: Include file check macros honor CMAKE_REQUIRED_LIBRARIES. Run "cmake --help-policy CMP0075" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CMAKE_REQUIRED_LIBRARIES is set to: -Wl,-O1 -Wl,--as-needed For compatibility with CMake 3.11 and below this check is ignoring it. Call Stack (most recent call first): cmake/checks/check_02_system_features.cmake:36 (CHECK_INCLUDE_FILE_CXX) cmake/macros/macro_verbose_include.cmake:19 (INCLUDE) CMakeLists.txt:115 (VERBOSE_INCLUDE) This warning is for project developers. Use -Wno-dev to suppress it. -- Looking for C++ include sys/resource.h - found -- Looking for C++ include unistd.h -- Looking for C++ include unistd.h - found -- Looking for gethostname -- Looking for gethostname - found -- Looking for getpid -- Looking for getpid - found -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/checks/check_03_compiler_bugs.cmake -- Performing Test DEAL_II_TEMPL_SPEC_FRIEND_BUG_OK -- Performing Test DEAL_II_TEMPL_SPEC_FRIEND_BUG_OK - Success -- Test successful, do not define DEAL_II_TEMPL_SPEC_FRIEND_BUG -- Performing Test DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG_OK -- Performing Test DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG_OK - Success -- Test successful, do not define DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG -- Performing Test DEAL_II_CONST_MEMBER_DEDUCTION_BUG_OK -- Performing Test DEAL_II_CONST_MEMBER_DEDUCTION_BUG_OK - Success -- Test successful, do not define DEAL_II_CONST_MEMBER_DEDUCTION_BUG -- Performing Test DEAL_II_BIND_NO_CONST_OP_PARENTHESES_OK -- Performing Test DEAL_II_BIND_NO_CONST_OP_PARENTHESES_OK - Success -- Test successful, do not define DEAL_II_BIND_NO_CONST_OP_PARENTHESES -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_1_cuda.cmake -- DEAL_II_WITH_CUDA is set to off. -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_1_lapack.cmake -- Found PkgConfig: x86_64-pc-linux-gnu-pkg-config (found version "1.6.3") -- Checking for module 'blas' -- Found blas, version 3.8.0 -- Checking for module 'lapack' -- Found lapack, version 3.8.0 -- Found LAPACK: /usr/lib64/liblapack.so -- Performing Test gfortran_LIBRARY -- Performing Test gfortran_LIBRARY - Success -- Performing Test m_LIBRARY -- Performing Test m_LIBRARY - Success -- Performing Test gcc_s_LIBRARY -- Performing Test gcc_s_LIBRARY - Success -- Performing Test gcc_LIBRARY -- Performing Test gcc_LIBRARY - Success -- Performing Test quadmath_LIBRARY -- Performing Test quadmath_LIBRARY - Success -- Performing Test c_LIBRARY -- Performing Test c_LIBRARY - Success -- LAPACK_LIBRARIES: /usr/lib64/liblapack.so;/usr/lib64/libblas.so;gfortran;m;gcc_s;gcc;quadmath;m;gcc_s;gcc;c;gcc_s;gcc -- LAPACK_LINKER_FLAGS: -- LAPACK_INCLUDE_DIRS: -- LAPACK_USER_INCLUDE_DIRS: -- Found LAPACK -- Performing Test DEAL_II_HAVE_FLAG_pthread -- Performing Test DEAL_II_HAVE_FLAG_pthread - Success -- Performing Test LAPACK_SYMBOL_CHECK -- Performing Test LAPACK_SYMBOL_CHECK - Success -- Performing Test MKL_SYMBOL_CHECK -- Performing Test MKL_SYMBOL_CHECK - Failed -- Use other than Intel MKL implementation of BLAS/LAPACK (consult CMakeFiles/CMakeError.log for further information). -- DEAL_II_WITH_LAPACK successfully set up with external dependencies. -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_1_mpi.cmake -- DEAL_II_WITH_MPI is set to off. -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_1_threads.cmake -- Found TBB_LIBRARY -- TBB_DEBUG_LIBRARY not found! Call: -- FIND_LIBRARY(TBB_DEBUG_LIBRARY NAMES tbb_debug HINTS PATH_SUFFIXES lib64 lib64 lib) -- Found TBB_INCLUDE_DIR -- TBB_VERSION: 8.0 -- TBB_LIBRARIES: /usr/lib64/libtbb.so -- TBB_INCLUDE_DIRS: /usr/include -- TBB_USER_INCLUDE_DIRS: /usr/include -- Found TBB -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test DEAL_II_HAVE_MT_POSIX_BARRIERS -- Performing Test DEAL_II_HAVE_MT_POSIX_BARRIERS - Success -- DEAL_II_WITH_THREADS successfully set up with external dependencies. -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_1_zlib.cmake -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.11") -- ZLIB_VERSION: 1.2.11 -- ZLIB_LIBRARIES: /usr/lib64/libz.so -- ZLIB_INCLUDE_DIRS: /usr/include -- Found ZLIB -- DEAL_II_WITH_ZLIB successfully set up with external dependencies. -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_2_boost.cmake -- Found Boost: /usr/include (found suitable version "1.70.0", minimum required is "1.59") found components: iostreams serialization system thread regex chrono date_time atomic -- BOOST_VERSION: 1.70.0 -- BOOST_LIBRARIES: /usr/lib64/libboost_iostreams-mt.so;/usr/lib64/libboost_serialization-mt.so;/usr/lib64/libboost_system-mt.so;/usr/lib64/libboost_thread-mt.so;-pthread;/usr/lib64/libboost_regex-mt.so;/usr/lib64/libboost_chrono-mt.so;/usr/lib64/libboost_date_time-mt.so;/usr/lib64/libboost_atomic-mt.so -- BOOST_INCLUDE_DIRS: /usr/include -- BOOST_USER_INCLUDE_DIRS: /usr/include -- Found BOOST -- Performing Test BOOST_IOSTREAMS_USABLE -- Performing Test BOOST_IOSTREAMS_USABLE - Success -- Performing Test DEAL_II_HAS_AUTO_PTR -- Performing Test DEAL_II_HAS_AUTO_PTR - Failed -- DEAL_II_WITH_BOOST successfully set up with external dependencies. -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_2_ginkgo.cmake -- DEAL_II_WITH_GINKGO is set to off. -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_2_metis.cmake -- DEAL_II_WITH_METIS is set to off. -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_2_trilinos.cmake -- DEAL_II_WITH_TRILINOS is set to off. -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_2_umfpack.cmake -- Found UMFPACK_INCLUDE_DIR -- Found AMD_INCLUDE_DIR -- Found SuiteSparse_config_INCLUDE_DIR -- Found UMFPACK_LIBRARY -- Found AMD_LIBRARY -- Found CHOLMOD_LIBRARY -- Found COLAMD_LIBRARY -- CCOLAMD_LIBRARY not found! Call: -- FIND_LIBRARY(CCOLAMD_LIBRARY NAMES ccolamd libccolamd HINTS /CCOLAMD /../CCOLAMD /CCOLAMD PATH_SUFFIXES lib64 lib64 lib Lib CCOLAMD/Lib) -- CAMD_LIBRARY not found! Call: -- FIND_LIBRARY(CAMD_LIBRARY NAMES camd libcamd HINTS /CAMD /../CAMD /CAMD PATH_SUFFIXES lib64 lib64 lib Lib CAMD/Lib) -- Found SuiteSparse_config_LIBRARY -- Performing Test rt_LIBRARY -- Performing Test rt_LIBRARY - Success -- UMFPACK_VERSION: 5.6.2 -- UMFPACK_LIBRARIES: /usr/lib64/libumfpack.so;/usr/lib64/libcholmod.so;/usr/lib64/libcolamd.so;/usr/lib64/libsuitesparseconfig.so;/usr/lib64/libamd.so;/usr/lib64/liblapack.so;/usr/lib64/libblas.so;gfortran;quadmath;m;c;gcc_s;gcc;rt -- UMFPACK_INCLUDE_DIRS: /usr/include;/usr/include;/usr/include -- UMFPACK_USER_INCLUDE_DIRS: /usr/include;/usr/include;/usr/include -- UMFPACK_LINKER_FLAGS: -- Found UMFPACK -- DEAL_II_WITH_UMFPACK successfully set up with external dependencies. -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_3_petsc.cmake -- DEAL_II_WITH_PETSC is set to off. -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_adolc.cmake -- DEAL_II_WITH_ADOLC is set to off. -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_arpack.cmake -- DEAL_II_WITH_ARPACK is set to off. -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_assimp.cmake -- DEAL_II_WITH_ASSIMP is set to off. -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_complex_values.cmake -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_gmsh.cmake -- DEAL_II_WITH_GMSH is set to off. -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_gsl.cmake -- Found GSL_LIBRARY -- Found GSL_CBLAS_LIBRARY -- Found GSL_INCLUDE_DIR -- GSL_VERSION: 2.5 -- GSL_LIBRARIES: /usr/lib64/libgsl.so;/usr/lib64/libgslcblas.so -- GSL_INCLUDE_DIRS: /usr/include -- GSL_USER_INCLUDE_DIRS: /usr/include -- Found GSL -- DEAL_II_WITH_GSL successfully set up with external dependencies. -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_hdf5.cmake -- Found HDF5_INCLUDE_DIR -- Found HDF5_LIBRARY -- Found HDF5_HL_LIBRARY -- Found HDF5_PUBCONF -- HDF5_LIBRARIES: /usr/lib64/libhdf5_hl.so;/usr/lib64/libhdf5.so -- HDF5_INCLUDE_DIRS: /usr/include -- HDF5_USER_INCLUDE_DIRS: /usr/include -- Found HDF5 -- DEAL_II_WITH_HDF5 successfully set up with external dependencies. -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_muparser.cmake -- DEAL_II_WITH_MUPARSER is set to off. -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_nanoflann.cmake -- DEAL_II_WITH_NANOFLANN is set to off. -- -- Include /var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1/cmake/configure/configure_netcdf.cmake -- NETCDF_INCLUDE_DIR not found! Call: -- FIND_PATH(NETCDF_INCLUDE_DIR netcdfcpp.h HINTS PATH_SUFFIXES netcdf include) -- NETCDF_CPLUSPLUS_LIBRARY not found! Call: -- FIND_LIBRARY(NETCDF_CPLUSPLUS_LIBRARY NAMES netcdf_c++ netcdf_cpp HINTS PATH_SUFFIXES lib64 lib64 lib) -- Found NETCDF_C_LIBRARY -- NETCDF_LIBRARIES: *** Required variable "NETCDF_CPLUSPLUS_LIBRARY" set to NOTFOUND *** -- NETCDF_INCLUDE_DIRS: *** Required variable "NETCDF_INCLUDE_DIR" set to NOTFOUND *** -- Could NOT find NETCDF -- DEAL_II_WITH_NETCDF has unmet external dependencies. CMake Error at cmake/macros/macro_configure_feature.cmake:112 (MESSAGE): Could not find the netcdf library! Please ensure that a suitable netcdf library is installed on your computer. If the library is not at a default location, either provide some hints for autodetection, $ NETCDF_DIR="..." cmake <...> $ cmake -DNETCDF_DIR="..." <...> or set the relevant variables by hand in ccmake. Call Stack (most recent call first): cmake/macros/macro_configure_feature.cmake:269 (FEATURE_ERROR_MESSAGE) cmake/configure/configure_netcdf.cmake:20 (CONFIGURE_FEATURE) cmake/macros/macro_verbose_include.cmake:19 (INCLUDE) CMakeLists.txt:124 (VERBOSE_INCLUDE) -- Configuring incomplete, errors occurred! See also "/var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1_build/CMakeFiles/CMakeOutput.log". See also "/var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1_build/CMakeFiles/CMakeError.log". * ERROR: sci-libs/dealii-9.1.1::gentoo failed (configure phase): * cmake failed * * Call stack: * ebuild.sh, line 125: Called src_configure * environment, line 2106: Called cmake-utils_src_configure * environment, line 939: Called die * The specific snippet of code: * "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed"; * * If you need support, post the output of `emerge --info '=sci-libs/dealii-9.1.1::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-libs/dealii-9.1.1::gentoo'`. * The complete build log is located at '/var/log/portage/sci-libs:dealii-9.1.1:20190815-054217.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-libs/dealii-9.1.1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-libs/dealii-9.1.1/temp/environment'. * Working directory: '/var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1_build' * S: '/var/tmp/portage/sci-libs/dealii-9.1.1/work/dealii-9.1.1'